data_MY5 # _chem_comp.id MY5 _chem_comp.name "{1-[(3S)-4-{[(1S)-2-(BENZYLAMINO)-1-METHYL-2-OXOETHYL]AMINO}-3-HYDROXY-4-OXOBUTANOYL]HYDRAZINO}ACETIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H22 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-05-22 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 366.369 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MY5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MY5 N1 N1 N 0 1 N N N Y N N 35.057 32.206 30.985 4.615 -1.238 -0.307 N1 MY5 1 MY5 N N2 N 0 1 N N N Y Y N 36.279 32.105 30.221 3.948 -2.273 0.282 N2 MY5 2 MY5 C3 C3 C 0 1 N N N N N N 34.055 31.117 30.948 5.972 -1.440 -0.822 C3 MY5 3 MY5 C C4 C 0 1 N N N Y N Y 34.811 33.280 31.777 4.024 -0.032 -0.419 C4 MY5 4 MY5 O O5 O 0 1 N N N Y N Y 33.786 33.367 32.447 4.618 0.888 -0.942 O5 MY5 5 MY5 C6 C6 C 0 1 N N N N N N 33.563 30.755 29.580 6.972 -1.136 0.263 C6 MY5 6 MY5 O7 O7 O 0 1 N N N N N N 33.325 31.670 28.751 6.591 -0.786 1.355 O7 MY5 7 MY5 O8 O8 O 0 1 N N N N N N 33.390 29.528 29.339 8.286 -1.253 0.017 O8 MY5 8 MY5 C9 C9 C 0 1 N N N N N N 35.818 34.418 31.915 2.627 0.174 0.105 C9 MY5 9 MY5 C10 C10 C 0 1 N N S N N N 35.209 35.832 32.010 2.196 1.621 -0.146 C10 MY5 10 MY5 C11 C11 C 0 1 N N N N N N 36.234 36.901 32.314 0.757 1.795 0.266 C11 MY5 11 MY5 O12 O12 O 0 1 N N N N N N 36.644 37.039 33.457 0.475 2.528 1.191 O12 MY5 12 MY5 N13 N13 N 0 1 N N N N N N 36.673 37.669 31.275 -0.217 1.136 -0.392 N13 MY5 13 MY5 C14 C14 C 0 1 N N S N N N 38.027 38.250 31.281 -1.616 1.305 0.009 C14 MY5 14 MY5 C15 C15 C 0 1 N N N N N N 38.522 38.383 29.824 -2.196 2.546 -0.674 C15 MY5 15 MY5 C16 C16 C 0 1 N N N N N N 38.003 39.596 32.002 -2.407 0.090 -0.402 C16 MY5 16 MY5 O17 O17 O 0 1 N N N N N N 39.060 40.172 32.246 -1.856 -0.827 -0.974 O17 MY5 17 MY5 N18 N18 N 0 1 N N N N N N 36.773 40.087 32.347 -3.726 0.022 -0.135 N18 MY5 18 MY5 C19 C19 C 0 1 N N N N N N 36.602 41.363 33.055 -4.495 -1.159 -0.535 C19 MY5 19 MY5 C20 C20 C 0 1 Y N N N N N 34.590 44.473 30.671 -8.574 -0.666 0.633 C20 MY5 20 MY5 C21 C21 C 0 1 Y N N N N N 34.640 44.570 32.090 -8.154 -0.233 -0.610 C21 MY5 21 MY5 C22 C22 C 0 1 Y N N N N N 35.290 43.561 32.852 -6.834 -0.392 -0.988 C22 MY5 22 MY5 C23 C23 C 0 1 Y N N N N N 35.900 42.444 32.206 -5.934 -0.985 -0.123 C23 MY5 23 MY5 C24 C24 C 0 1 Y N N N N N 35.847 42.352 30.780 -6.354 -1.418 1.121 C24 MY5 24 MY5 C25 C25 C 0 1 Y N N N N N 35.195 43.363 30.015 -7.674 -1.258 1.499 C25 MY5 25 MY5 O28 O28 O 0 1 N N N N N N 34.591 36.172 30.762 3.020 2.503 0.619 O28 MY5 26 MY5 H2 H2N1 H 0 0 N Y N Y Y N 36.832 32.926 30.366 3.030 -1.985 0.586 H2N1 MY5 27 MY5 H H2N2 H 0 0 N N N Y Y N 36.793 31.300 30.519 3.891 -3.067 -0.338 H2N2 MY5 28 MY5 H3C1 H3C1 H 0 0 N N N N N N 34.520 30.220 31.383 6.088 -2.475 -1.144 H3C1 MY5 29 MY5 H3C2 H3C2 H 0 0 N N N N N N 33.187 31.442 31.540 6.142 -0.775 -1.669 H3C2 MY5 30 MY5 H8 H8 H 0 1 N N N N N N 33.061 29.422 28.454 8.889 -1.048 0.744 H8 MY5 31 MY5 H9C1 H9C1 H 0 0 N N N N N N 36.393 34.242 32.836 1.943 -0.503 -0.407 H9C1 MY5 32 MY5 H9C2 H9C2 H 0 0 N Y N N N N 36.467 34.396 31.027 2.607 -0.030 1.176 H9C2 MY5 33 MY5 H10 H10 H 0 1 N N N N N N 34.484 35.801 32.836 2.301 1.852 -1.206 H10 MY5 34 MY5 H13 H13 H 0 1 N N N N N N 36.067 37.840 30.498 0.008 0.550 -1.131 H13 MY5 35 MY5 H14 H14 H 0 1 N N N N N N 38.727 37.597 31.823 -1.672 1.426 1.090 H14 MY5 36 MY5 H151 H151 H 0 0 N N N N N N 39.533 38.816 29.818 -3.237 2.672 -0.376 H151 MY5 37 MY5 H152 H152 H 0 0 N N N N N N 38.546 37.389 29.353 -1.624 3.425 -0.377 H152 MY5 38 MY5 H153 H153 H 0 0 N N N N N N 37.839 39.038 29.263 -2.140 2.424 -1.756 H153 MY5 39 MY5 H18 H18 H 0 1 N N N N N N 35.959 39.557 32.108 -4.167 0.756 0.322 H18 MY5 40 MY5 H191 H191 H 0 0 N N N N N N 35.991 41.180 33.951 -4.439 -1.280 -1.616 H191 MY5 41 MY5 H192 H192 H 0 0 N N N N N N 37.598 41.738 33.333 -4.082 -2.043 -0.048 H192 MY5 42 MY5 H20 H20 H 0 1 N N N N N N 34.095 45.239 30.093 -9.604 -0.537 0.930 H20 MY5 43 MY5 H21 H21 H 0 1 N N N N N N 34.183 45.412 32.589 -8.857 0.230 -1.287 H21 MY5 44 MY5 H22 H22 H 0 1 N N N N N N 35.322 43.640 33.929 -6.506 -0.055 -1.960 H22 MY5 45 MY5 H24 H24 H 0 1 N N N N N N 36.304 41.511 30.279 -5.651 -1.881 1.798 H24 MY5 46 MY5 H25 H25 H 0 1 N N N N N N 35.160 43.287 28.938 -8.002 -1.597 2.471 H25 MY5 47 MY5 H28 H28 H 0 1 N N N N N N 34.216 37.043 30.821 2.977 2.354 1.573 H28 MY5 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MY5 N1 N SING N N 1 MY5 N1 C3 SING N N 2 MY5 N1 C SING N N 3 MY5 N H2 SING N N 4 MY5 N H SING N N 5 MY5 C3 C6 SING N N 6 MY5 C3 H3C1 SING N N 7 MY5 C3 H3C2 SING N N 8 MY5 C O DOUB N N 9 MY5 C C9 SING N N 10 MY5 C6 O7 DOUB N N 11 MY5 C6 O8 SING N N 12 MY5 O8 H8 SING N N 13 MY5 C9 C10 SING N N 14 MY5 C9 H9C1 SING N N 15 MY5 C9 H9C2 SING N N 16 MY5 C10 C11 SING N N 17 MY5 C10 O28 SING N N 18 MY5 C10 H10 SING N N 19 MY5 C11 O12 DOUB N N 20 MY5 C11 N13 SING N N 21 MY5 N13 C14 SING N N 22 MY5 N13 H13 SING N N 23 MY5 C14 C15 SING N N 24 MY5 C14 C16 SING N N 25 MY5 C14 H14 SING N N 26 MY5 C15 H151 SING N N 27 MY5 C15 H152 SING N N 28 MY5 C15 H153 SING N N 29 MY5 C16 O17 DOUB N N 30 MY5 C16 N18 SING N N 31 MY5 N18 C19 SING N N 32 MY5 N18 H18 SING N N 33 MY5 C19 C23 SING N N 34 MY5 C19 H191 SING N N 35 MY5 C19 H192 SING N N 36 MY5 C20 C21 DOUB Y N 37 MY5 C20 C25 SING Y N 38 MY5 C20 H20 SING N N 39 MY5 C21 C22 SING Y N 40 MY5 C21 H21 SING N N 41 MY5 C22 C23 DOUB Y N 42 MY5 C22 H22 SING N N 43 MY5 C23 C24 SING Y N 44 MY5 C24 C25 DOUB Y N 45 MY5 C24 H24 SING N N 46 MY5 C25 H25 SING N N 47 MY5 O28 H28 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MY5 SMILES ACDLabs 12.01 "O=C(O)CN(N)C(=O)CC(O)C(=O)NC(C(=O)NCc1ccccc1)C" MY5 SMILES_CANONICAL CACTVS 3.370 "C[C@H](NC(=O)[C@@H](O)CC(=O)N(N)CC(O)=O)C(=O)NCc1ccccc1" MY5 SMILES CACTVS 3.370 "C[CH](NC(=O)[CH](O)CC(=O)N(N)CC(O)=O)C(=O)NCc1ccccc1" MY5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C[C@@H](C(=O)NCc1ccccc1)NC(=O)[C@H](CC(=O)N(CC(=O)O)N)O" MY5 SMILES "OpenEye OEToolkits" 1.7.2 "CC(C(=O)NCc1ccccc1)NC(=O)C(CC(=O)N(CC(=O)O)N)O" MY5 InChI InChI 1.03 "InChI=1S/C16H22N4O6/c1-10(15(25)18-8-11-5-3-2-4-6-11)19-16(26)12(21)7-13(22)20(17)9-14(23)24/h2-6,10,12,21H,7-9,17H2,1H3,(H,18,25)(H,19,26)(H,23,24)/t10-,12-/m0/s1" MY5 InChIKey InChI 1.03 JZPDINAZOJYWHO-JQWIXIFHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MY5 "SYSTEMATIC NAME" ACDLabs 12.01 "{1-[(3S)-4-{[(2S)-1-(benzylamino)-1-oxopropan-2-yl]amino}-3-hydroxy-4-oxobutanoyl]hydrazinyl}acetic acid" MY5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "2-[azanyl-[(3S)-3-oxidanyl-4-oxidanylidene-4-[[(2S)-1-oxidanylidene-1-[(phenylmethyl)amino]propan-2-yl]amino]butanoyl]amino]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MY5 "Create component" 2006-05-22 EBI MY5 "Modify leaving atom flag" 2011-05-17 RCSB MY5 "Modify descriptor" 2011-06-04 RCSB MY5 "Modify backbone" 2023-11-03 PDBE #