data_MYL
#
_chem_comp.id MYL
_chem_comp.name "Mycalamide A"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C24 H41 N O10"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(2S)-N-{(4R,4aS,6R,8S,8aR)-6-[(2S)-2,3-dihydroxypropyl]-8-methoxy-7,7-dimethylhexahydropyrano[3,2-d][1,3]dioxin-4-yl}-2-hydroxy-2-[(2R,5R,6R)-2-methoxy-5,6-dimethyl-4-methylidenetetrahydro-2H-pyran-2-yl]ethanamide"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-08-21
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 503.583
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MYL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3I55
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MYL CAA CAA C 0 1 N N N 83.703 79.568 67.026 -6.141 1.636 -0.423 CAA MYL 1
MYL CAB CAB C 0 1 N N N 80.851 81.492 64.885 -3.955 -2.843 -0.588 CAB MYL 2
MYL CAC CAC C 0 1 N N N 84.493 83.690 66.471 -2.345 0.186 -3.092 CAC MYL 3
MYL CAD CAD C 0 1 N N N 83.367 82.115 68.570 -2.997 2.466 -1.490 CAD MYL 4
MYL CAE CAE C 0 1 N N N 88.908 84.293 58.994 3.384 2.172 -1.925 CAE MYL 5
MYL CAF CAF C 0 1 N N N 87.010 83.190 57.762 5.218 0.479 -1.789 CAF MYL 6
MYL CAG CAG C 0 1 N N N 89.883 80.402 59.146 5.488 0.502 2.096 CAG MYL 7
MYL OAG OAG O 0 1 N N N 84.628 84.444 63.715 -1.646 0.352 2.902 OAG MYL 8
MYL OAH OAH O 0 1 N N N 86.086 88.083 60.589 2.211 -4.993 -0.524 OAH MYL 9
MYL OAI OAI O 0 1 N N N 84.007 85.074 60.657 1.182 -2.330 -0.195 OAI MYL 10
MYL OAJ OAJ O 0 1 N N N 84.135 81.223 62.243 -3.555 -1.410 2.639 OAJ MYL 11
MYL OAK OAK O 0 1 N N N 89.091 81.466 58.611 4.651 0.163 0.988 OAK MYL 12
MYL CAL CAL C 0 1 N N N 84.909 87.293 60.405 3.039 -3.876 -0.194 CAL MYL 13
MYL CAM CAM C 0 1 N N N 88.234 80.259 61.720 0.987 3.272 0.795 CAM MYL 14
MYL CAN CAN C 0 1 N N N 84.044 81.101 65.027 -4.244 0.618 0.775 CAN MYL 15
MYL CAO CAO C 0 1 N N N 86.220 85.279 59.691 3.395 -1.429 -0.557 CAO MYL 16
MYL NAP NAP N 0 1 N N N 86.101 82.969 62.904 -0.607 -0.029 0.980 NAP MYL 17
MYL OAQ OAQ O 0 1 N N N 81.892 81.202 63.948 -4.513 -1.641 -0.054 OAQ MYL 18
MYL OAR OAR O 0 1 N N N 87.913 81.604 62.109 0.039 2.218 0.615 OAR MYL 19
MYL OAS OAS O 0 1 N N N 87.506 79.887 60.539 2.263 2.858 0.299 OAS MYL 20
MYL OAT OAT O 0 1 N N N 82.646 83.139 64.966 -2.678 -0.387 -0.767 OAT MYL 21
MYL OAU OAU O 0 1 N N N 85.613 82.997 60.289 1.646 0.235 -0.654 OAU MYL 22
MYL CAV CAV C 0 1 N N N 83.517 80.811 66.439 -4.894 1.236 -0.446 CAV MYL 23
MYL CAW CAW C 0 1 N N N 84.874 83.348 63.223 -1.617 -0.243 1.846 CAW MYL 24
MYL CAX CAX C 0 1 N N S 85.220 85.827 60.714 2.445 -2.604 -0.803 CAX MYL 25
MYL CAY CAY C 0 1 N N R 83.040 83.228 66.346 -3.356 0.030 -1.954 CAY MYL 26
MYL CAZ CAZ C 0 1 N N R 82.800 81.950 67.157 -4.048 1.374 -1.696 CAZ MYL 27
MYL CBA CBA C 0 1 N N R 86.719 83.903 60.143 2.863 -0.185 -1.272 CBA MYL 28
MYL CBB CBB C 0 1 N N S 83.698 82.396 62.919 -2.711 -1.221 1.502 CBB MYL 29
MYL CBC CBC C 0 1 N N R 86.488 81.712 62.213 0.400 0.996 1.267 CBC MYL 30
MYL CBD CBD C 0 1 N N S 88.208 81.995 59.611 4.110 1.294 0.301 CBD MYL 31
MYL CBE CBE C 0 1 N N N 87.710 83.352 59.115 3.896 0.941 -1.174 CBE MYL 32
MYL CBF CBF C 0 1 N N R 87.032 81.060 59.859 2.770 1.679 0.928 CBF MYL 33
MYL CBG CBG C 0 1 N N S 85.995 81.697 60.773 1.765 0.539 0.738 CBG MYL 34
MYL CBH CBH C 0 1 N N R 83.062 81.970 64.247 -3.538 -0.672 0.338 CBH MYL 35
MYL HAA HAA H 0 1 N N N 83.335 79.382 68.024 -6.726 1.527 0.479 HAA MYL 36
MYL HAAA HAAA H 0 0 N N N 84.216 78.787 66.485 -6.583 2.078 -1.303 HAAA MYL 37
MYL HAB HAB H 0 1 N N N 79.960 80.894 64.641 -4.758 -3.537 -0.835 HAB MYL 38
MYL HABA HABA H 0 0 N N N 81.192 81.243 65.901 -3.385 -2.611 -1.487 HABA MYL 39
MYL HABB HABB H 0 0 N N N 80.600 82.562 64.834 -3.296 -3.298 0.152 HABB MYL 40
MYL HAC HAC H 0 1 N N N 84.769 83.750 67.534 -1.851 -0.769 -3.272 HAC MYL 41
MYL HACA HACA H 0 0 N N N 85.151 82.971 65.961 -2.863 0.504 -3.997 HACA MYL 42
MYL HACB HACB H 0 0 N N N 84.604 84.681 66.007 -1.602 0.934 -2.817 HACB MYL 43
MYL HAD HAD H 0 1 N N N 82.845 82.938 69.081 -2.356 2.200 -0.649 HAD MYL 44
MYL HADA HADA H 0 0 N N N 83.222 81.182 69.134 -2.391 2.562 -2.391 HADA MYL 45
MYL HADB HADB H 0 0 N N N 84.441 82.344 68.509 -3.493 3.414 -1.283 HADB MYL 46
MYL HAE HAE H 0 1 N N N 89.395 84.395 59.975 3.386 1.970 -2.996 HAE MYL 47
MYL HAEA HAEA H 0 0 N N N 89.626 83.881 58.269 2.368 2.399 -1.600 HAEA MYL 48
MYL HAEB HAEB H 0 0 N N N 88.565 85.280 58.650 4.032 3.022 -1.714 HAEB MYL 49
MYL HAF HAF H 0 1 N N N 86.152 82.510 57.871 5.953 1.280 -1.716 HAF MYL 50
MYL HAFA HAFA H 0 0 N N N 86.657 84.171 57.412 5.581 -0.398 -1.253 HAFA MYL 51
MYL HAFB HAFB H 0 0 N N N 87.718 82.772 57.031 5.061 0.224 -2.838 HAFB MYL 52
MYL HAG HAG H 0 1 N N N 90.551 80.012 58.364 5.859 -0.410 2.564 HAG MYL 53
MYL HAGA HAGA H 0 0 N N N 90.484 80.779 59.987 6.330 1.099 1.746 HAGA MYL 54
MYL HAGB HAGB H 0 0 N N N 89.223 79.596 59.499 4.914 1.076 2.823 HAGB MYL 55
MYL HOAH HOAH H 0 0 N N N 85.891 88.993 60.397 2.528 -5.835 -0.170 HOAH MYL 56
MYL HOAI HOAI H 0 0 N N N 84.191 84.162 60.848 1.227 -2.195 0.762 HOAI MYL 57
MYL HOAJ HOAJ H 0 0 N N N 83.390 80.660 62.071 -3.983 -0.601 2.950 HOAJ MYL 58
MYL HAL HAL H 0 1 N N N 84.119 87.650 61.083 3.092 -3.770 0.889 HAL MYL 59
MYL HALA HALA H 0 0 N N N 84.568 87.383 59.363 4.041 -4.036 -0.593 HALA MYL 60
MYL HAM HAM H 0 1 N N N 87.967 79.574 62.538 0.655 4.156 0.252 HAM MYL 61
MYL HAMA HAMA H 0 0 N N N 89.312 80.192 61.514 1.070 3.508 1.856 HAMA MYL 62
MYL HAN HAN H 0 1 N N N 84.181 80.149 64.494 -3.517 1.311 1.196 HAN MYL 63
MYL HANA HANA H 0 0 N N N 85.006 81.629 65.105 -5.006 0.386 1.520 HANA MYL 64
MYL HAO HAO H 0 1 N N N 87.073 85.968 59.609 3.461 -1.234 0.513 HAO MYL 65
MYL HAOA HAOA H 0 0 N N N 85.727 85.185 58.712 4.384 -1.675 -0.943 HAOA MYL 66
MYL HNAP HNAP H 0 0 N N N 86.843 83.592 63.153 -0.546 -0.555 0.167 HNAP MYL 67
MYL HAX HAX H 0 1 N N N 85.661 85.746 61.718 2.310 -2.743 -1.875 HAX MYL 68
MYL HAY HAY H 0 1 N N N 82.378 83.985 66.791 -4.101 -0.717 -2.228 HAY MYL 69
MYL HAZ HAZ H 0 1 N N N 81.724 81.739 67.240 -4.684 1.629 -2.544 HAZ MYL 70
MYL HBA HBA H 0 1 N N N 87.222 84.007 61.116 2.677 -0.419 -2.320 HBA MYL 71
MYL HBB HBB H 0 1 N N N 82.982 82.928 62.275 -2.268 -2.174 1.215 HBB MYL 72
MYL HBC HBC H 0 1 N N N 86.048 80.897 62.806 0.459 1.159 2.343 HBC MYL 73
MYL HBD HBD H 0 1 N N N 88.745 82.100 60.565 4.803 2.132 0.379 HBD MYL 74
MYL HBF HBF H 0 1 N N N 86.581 80.829 58.883 2.908 1.867 1.993 HBF MYL 75
MYL HBG HBG H 0 1 N N N 85.081 81.085 60.762 2.105 -0.345 1.278 HBG MYL 76
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MYL CAV CAA DOUB N N 1
MYL CAA HAA SING N N 2
MYL CAA HAAA SING N N 3
MYL OAQ CAB SING N N 4
MYL CAB HAB SING N N 5
MYL CAB HABA SING N N 6
MYL CAB HABB SING N N 7
MYL CAY CAC SING N N 8
MYL CAC HAC SING N N 9
MYL CAC HACA SING N N 10
MYL CAC HACB SING N N 11
MYL CAZ CAD SING N N 12
MYL CAD HAD SING N N 13
MYL CAD HADA SING N N 14
MYL CAD HADB SING N N 15
MYL CAE CBE SING N N 16
MYL CAE HAE SING N N 17
MYL CAE HAEA SING N N 18
MYL CAE HAEB SING N N 19
MYL CAF CBE SING N N 20
MYL CAF HAF SING N N 21
MYL CAF HAFA SING N N 22
MYL CAF HAFB SING N N 23
MYL OAK CAG SING N N 24
MYL CAG HAG SING N N 25
MYL CAG HAGA SING N N 26
MYL CAG HAGB SING N N 27
MYL CAW OAG DOUB N N 28
MYL CAL OAH SING N N 29
MYL OAH HOAH SING N N 30
MYL OAI CAX SING N N 31
MYL OAI HOAI SING N N 32
MYL OAJ CBB SING N N 33
MYL OAJ HOAJ SING N N 34
MYL OAK CBD SING N N 35
MYL CAL CAX SING N N 36
MYL CAL HAL SING N N 37
MYL CAL HALA SING N N 38
MYL OAS CAM SING N N 39
MYL CAM OAR SING N N 40
MYL CAM HAM SING N N 41
MYL CAM HAMA SING N N 42
MYL CBH CAN SING N N 43
MYL CAN CAV SING N N 44
MYL CAN HAN SING N N 45
MYL CAN HANA SING N N 46
MYL CAO CBA SING N N 47
MYL CAO CAX SING N N 48
MYL CAO HAO SING N N 49
MYL CAO HAOA SING N N 50
MYL CBC NAP SING N N 51
MYL NAP CAW SING N N 52
MYL NAP HNAP SING N N 53
MYL OAQ CBH SING N N 54
MYL OAR CBC SING N N 55
MYL CBF OAS SING N N 56
MYL CBH OAT SING N N 57
MYL OAT CAY SING N N 58
MYL CBA OAU SING N N 59
MYL OAU CBG SING N N 60
MYL CAV CAZ SING N N 61
MYL CBB CAW SING N N 62
MYL CAX HAX SING N N 63
MYL CAY CAZ SING N N 64
MYL CAY HAY SING N N 65
MYL CAZ HAZ SING N N 66
MYL CBE CBA SING N N 67
MYL CBA HBA SING N N 68
MYL CBB CBH SING N N 69
MYL CBB HBB SING N N 70
MYL CBG CBC SING N N 71
MYL CBC HBC SING N N 72
MYL CBE CBD SING N N 73
MYL CBD CBF SING N N 74
MYL CBD HBD SING N N 75
MYL CBF CBG SING N N 76
MYL CBF HBF SING N N 77
MYL CBG HBG SING N N 78
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MYL SMILES ACDLabs 11.02 "O=C(NC2OCOC1C(OC)C(C(OC12)CC(O)CO)(C)C)C(O)C3(OC)OC(C)C(C(=C)/C3)C"
MYL SMILES_CANONICAL CACTVS 3.352 "CO[C@@H]1[C@H]2OCO[C@@H](NC(=O)[C@@H](O)[C@]3(CC(=C)[C@@H](C)[C@@H](C)O3)OC)[C@H]2O[C@H](C[C@H](O)CO)C1(C)C"
MYL SMILES CACTVS 3.352 "CO[CH]1[CH]2OCO[CH](NC(=O)[CH](O)[C]3(CC(=C)[CH](C)[CH](C)O3)OC)[CH]2O[CH](C[CH](O)CO)C1(C)C"
MYL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H]1[C@H](O[C@](CC1=C)([C@@H](C(=O)N[C@H]2[C@@H]3[C@@H]([C@H](C([C@H](O3)C[C@@H](CO)O)(C)C)OC)OCO2)O)OC)C"
MYL SMILES "OpenEye OEToolkits" 1.7.0 "CC1C(OC(CC1=C)(C(C(=O)NC2C3C(C(C(C(O3)CC(CO)O)(C)C)OC)OCO2)O)OC)C"
MYL InChI InChI 1.03 "InChI=1S/C24H41NO10/c1-12-9-24(31-7,35-14(3)13(12)2)19(28)21(29)25-22-18-17(32-11-33-22)20(30-6)23(4,5)16(34-18)8-15(27)10-26/h13-20,22,26-28H,1,8-11H2,2-7H3,(H,25,29)/t13-,14-,15+,16-,17+,18+,19-,20-,22-,24-/m1/s1"
MYL InChIKey InChI 1.03 IJASURGZDJYQGF-RXLGVIKCSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MYL "SYSTEMATIC NAME" ACDLabs 11.02 "(2S)-N-{(4R,4aS,6R,8S,8aR)-6-[(2S)-2,3-dihydroxypropyl]-8-methoxy-7,7-dimethylhexahydropyrano[3,2-d][1,3]dioxin-4-yl}-2-hydroxy-2-[(2R,5R,6R)-2-methoxy-5,6-dimethyl-4-methylidenetetrahydro-2H-pyran-2-yl]ethanamide (non-preferred name)"
MYL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-N-[(4R,4aS,6R,8S,8aR)-6-[(2S)-2,3-dihydroxypropyl]-8-methoxy-7,7-dimethyl-4a,6,8,8a-tetrahydro-4H-pyrano[3,2-d][1,3]dioxin-4-yl]-2-hydroxy-2-[(2R,5R,6R)-2-methoxy-5,6-dimethyl-4-methylidene-oxan-2-yl]ethanamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MYL "Create component" 2009-08-21 RCSB
MYL "Modify descriptor" 2011-06-04 RCSB
MYL "Modify synonyms" 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id MYL
_pdbx_chem_comp_synonyms.name "(2S)-N-{(4R,4aS,6R,8S,8aR)-6-[(2S)-2,3-dihydroxypropyl]-8-methoxy-7,7-dimethylhexahydropyrano[3,2-d][1,3]dioxin-4-yl}-2-hydroxy-2-[(2R,5R,6R)-2-methoxy-5,6-dimethyl-4-methylidenetetrahydro-2H-pyran-2-yl]ethanamide"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
##