data_N1C # _chem_comp.id N1C _chem_comp.name ;N1-CYCLIC INOSINE 5'-DIPHOSPHORIBOSE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H20 N4 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-04-13 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 542.285 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N1C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N1C O1B O1B O 0 1 N N N 5.561 3.510 3.387 5.561 3.510 3.387 O1B N1C 1 N1C PB PB P 0 1 N N N 4.162 4.101 3.481 4.162 4.101 3.481 PB N1C 2 N1C O3A O3A O 0 1 N N N 3.629 3.954 4.990 3.629 3.954 4.990 O3A N1C 3 N1C O2B O2B O 0 1 N N N 3.874 5.544 3.058 3.874 5.544 3.058 O2B N1C 4 N1C O5D O5D O 0 1 N N N 3.165 3.157 2.632 3.165 3.157 2.632 O5D N1C 5 N1C C5D C5D C 0 1 N N N 1.756 3.396 2.690 1.756 3.396 2.690 C5D N1C 6 N1C C4D C4D C 0 1 N N R 1.192 3.662 1.287 1.192 3.662 1.287 C4D N1C 7 N1C C3D C3D C 0 1 N N S -0.307 3.463 1.269 -0.307 3.463 1.269 C3D N1C 8 N1C O3D O3D O 0 1 N N N -0.890 4.584 0.591 -0.890 4.584 0.591 O3D N1C 9 N1C C2D C2D C 0 1 N N R -0.540 2.156 0.527 -0.540 2.156 0.527 C2D N1C 10 N1C O2D O2D O 0 1 N N N -1.350 2.416 -0.624 -1.350 2.416 -0.624 O2D N1C 11 N1C O4D O4D O 0 1 N N N 1.690 2.743 0.305 1.690 2.743 0.305 O4D N1C 12 N1C C1D C1D C 0 1 N N R 0.831 1.612 0.125 0.831 1.612 0.125 C1D N1C 13 N1C N1 N1 N 0 1 N N R 1.306 0.580 1.065 1.306 0.580 1.065 N1 N1C 14 N1C C6 C6 C 0 1 N N N 0.422 -0.351 1.672 0.422 -0.351 1.672 C6 N1C 15 N1C O6 O6 O 0 1 N N N -0.795 -0.396 1.404 -0.795 -0.396 1.404 O6 N1C 16 N1C C5 C5 C 0 1 Y N N 0.995 -1.327 2.628 0.995 -1.327 2.628 C5 N1C 17 N1C N7 N7 N 0 1 Y N N 0.454 -2.319 3.369 0.454 -2.319 3.369 N7 N1C 18 N1C C8 C8 C 0 1 Y N N 1.464 -2.881 4.069 1.464 -2.881 4.069 C8 N1C 19 N1C C2 C2 C 0 1 N N N 2.614 0.535 1.390 2.614 0.535 1.390 C2 N1C 20 N1C N3 N3 N 0 1 N N N 3.127 -0.350 2.263 3.127 -0.350 2.263 N3 N1C 21 N1C C4 C4 C 0 1 Y N N 2.350 -1.274 2.893 2.350 -1.274 2.893 C4 N1C 22 N1C N9 N9 N 0 1 Y N N 2.610 -2.251 3.771 2.610 -2.251 3.771 N9 N1C 23 N1C "C1'" "C1'" C 0 1 N N R 3.915 -2.596 4.389 3.915 -2.596 4.389 "C1'" N1C 24 N1C "O4'" "O4'" O 0 1 N N N 4.005 -1.740 5.535 4.005 -1.740 5.535 "O4'" N1C 25 N1C "C2'" "C2'" C 0 1 N N R 5.137 -2.306 3.526 5.137 -2.306 3.526 "C2'" N1C 26 N1C "O2'" "O2'" O 0 1 N N N 6.065 -3.383 3.711 6.065 -3.383 3.711 "O2'" N1C 27 N1C "C3'" "C3'" C 0 1 N N S 5.700 -1.082 4.161 5.700 -1.082 4.161 "C3'" N1C 28 N1C "O3'" "O3'" O 0 1 N N N 6.795 -0.460 3.732 6.795 -0.460 3.732 "O3'" N1C 29 N1C "C4'" "C4'" C 0 1 N N S 4.996 -0.736 5.221 4.996 -0.736 5.221 "C4'" N1C 30 N1C "C5'" "C5'" C 0 1 N N N 5.175 0.535 6.022 5.175 0.535 6.022 "C5'" N1C 31 N1C "O5'" "O5'" O 0 1 N N N 4.473 1.611 5.393 4.473 1.611 5.393 "O5'" N1C 32 N1C PA PA P 0 1 N N N 4.419 3.066 6.079 4.419 3.066 6.079 PA N1C 33 N1C O1A O1A O 0 1 N N N 5.832 3.585 6.240 5.832 3.585 6.240 O1A N1C 34 N1C O2A O2A O 0 1 N N N 3.506 3.006 7.278 3.506 3.006 7.278 O2A N1C 35 N1C HO1B HO1B H 0 0 N N N 6.159 4.163 3.044 6.159 4.163 3.043 HO1B N1C 36 N1C H5D1 H5D1 H 0 0 N N N 1.259 2.512 3.115 1.259 2.512 3.115 H5D1 N1C 37 N1C H5D2 H5D2 H 0 0 N N N 1.566 4.274 3.326 1.566 4.273 3.326 H5D2 N1C 38 N1C H4D H4D H 0 1 N N N 1.494 4.693 1.050 1.494 4.693 1.050 H4D N1C 39 N1C H3D H3D H 0 1 N N N -0.762 3.406 2.269 -0.762 3.406 2.269 H3D N1C 40 N1C HO3D HO3D H 0 0 N N N -1.834 4.483 0.566 -1.834 4.483 0.566 HO3D N1C 41 N1C H2D H2D H 0 1 N N N -1.062 1.417 1.152 -1.062 1.417 1.152 H2D N1C 42 N1C HO2D HO2D H 0 0 N N N -1.501 1.605 -1.095 -1.502 1.605 -1.095 HO2D N1C 43 N1C H1D H1D H 0 1 N N N 0.806 1.174 -0.884 0.806 1.174 -0.884 H1D N1C 44 N1C H8 H8 H 0 1 N N N 1.364 -3.706 4.759 1.364 -3.706 4.759 H8 N1C 45 N1C H2 H2 H 0 1 N N N 3.283 1.245 0.926 3.283 1.245 0.926 H2 N1C 46 N1C "H1'" "H1'" H 0 1 N N N 3.930 -3.679 4.583 3.930 -3.679 4.583 "H1'" N1C 47 N1C "H2'" "H2'" H 0 1 N N N 4.923 -2.191 2.453 4.923 -2.191 2.453 "H2'" N1C 48 N1C "HO2'" "HO2'" H 0 0 N N N 6.839 -3.228 3.183 6.839 -3.228 3.183 "HO2'" N1C 49 N1C "HO3'" "HO3'" H 0 0 N N N 6.968 0.294 4.284 6.968 0.294 4.284 "HO3'" N1C 50 N1C "H5'1" "H5'1" H 0 0 N N N 4.777 0.385 7.036 4.777 0.385 7.036 "H5'1" N1C 51 N1C "H5'2" "H5'2" H 0 0 N N N 6.245 0.782 6.078 6.245 0.782 6.078 "H5'2" N1C 52 N1C HO2A HO2A H 0 0 N N N 3.967 3.326 8.044 3.967 3.326 8.044 HO2A N1C 53 N1C HC3 HC3 H 0 1 N N N 6.402 -0.356 3.726 6.402 -0.356 3.726 HC3 N1C 54 N1C HC4 HC4 H 0 1 N N N 5.270 0.221 5.688 5.270 0.221 5.688 HC4 N1C 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N1C O1B PB SING N N 1 N1C O1B HO1B SING N N 2 N1C PB O5D SING N N 3 N1C PB O2B DOUB N N 4 N1C PB O3A SING N N 5 N1C O3A PA SING N N 6 N1C O5D C5D SING N N 7 N1C C5D C4D SING N N 8 N1C C5D H5D1 SING N N 9 N1C C5D H5D2 SING N N 10 N1C C4D O4D SING N N 11 N1C C4D C3D SING N N 12 N1C C4D H4D SING N N 13 N1C C3D C2D SING N N 14 N1C C3D O3D SING N N 15 N1C C3D H3D SING N N 16 N1C O3D HO3D SING N N 17 N1C C2D O2D SING N N 18 N1C C2D C1D SING N N 19 N1C C2D H2D SING N N 20 N1C O2D HO2D SING N N 21 N1C O4D C1D SING N N 22 N1C C1D N1 SING N N 23 N1C C1D H1D SING N N 24 N1C N1 C2 SING N N 25 N1C N1 C6 SING N N 26 N1C C6 O6 DOUB N N 27 N1C C6 C5 SING N N 28 N1C C5 C4 DOUB Y N 29 N1C C5 N7 SING Y N 30 N1C N7 C8 DOUB Y N 31 N1C C8 N9 SING Y N 32 N1C C8 H8 SING N N 33 N1C C2 N3 DOUB N N 34 N1C C2 H2 SING N N 35 N1C N3 C4 SING N N 36 N1C C4 N9 SING Y N 37 N1C N9 "C1'" SING N N 38 N1C "C1'" "C2'" SING N N 39 N1C "C1'" "O4'" SING N N 40 N1C "C1'" "H1'" SING N N 41 N1C "O4'" "C4'" SING N N 42 N1C "C2'" "O2'" SING N N 43 N1C "C2'" "C3'" SING N N 44 N1C "C2'" "H2'" SING N N 45 N1C "O2'" "HO2'" SING N N 46 N1C "C3'" "O3'" SING N N 47 N1C "C3'" "C4'" SING N N 48 N1C "O3'" "HO3'" SING N N 49 N1C "C4'" "C5'" SING N N 50 N1C "C5'" "O5'" SING N N 51 N1C "C5'" "H5'1" SING N N 52 N1C "C5'" "H5'2" SING N N 53 N1C "O5'" PA SING N N 54 N1C PA O1A DOUB N N 55 N1C PA O2A SING N N 56 N1C O2A HO2A SING N N 57 N1C HC3 "C3'" SING N N 58 N1C HC4 "C4'" SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N1C SMILES ACDLabs 11.02 "O=C2N3C=Nc1n(cnc12)C5OC(COP(=O)(O)OP(=O)(O)OCC4OC3C(O)C4O)C(O)C5O" N1C SMILES_CANONICAL CACTVS 3.352 "O[C@H]1[C@@H](O)[C@H]2O[C@@H]1CO[P](O)(=O)O[P](O)(=O)OC[C@@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5C(=O)[N@]2C=Nc45" N1C SMILES CACTVS 3.352 "O[CH]1[CH](O)[CH]2O[CH]1CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5C(=O)[N]2C=Nc45" N1C SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c3n1[C@H]4[C@@H](C(C(O4)CO[P@@](=O)(O[P@](=O)(OC[C@@H]5[C@H]([C@H]([C@@H](O5)N(C2=O)C=N3)O)O)O)O)O)O" N1C SMILES "OpenEye OEToolkits" 1.7.0 "c1nc2c3n1C4C(C(C(O4)COP(=O)(OP(=O)(OCC5C(C(C(O5)N(C2=O)C=N3)O)O)O)O)O)O" N1C InChI InChI 1.03 "InChI=1S/C15H20N4O14P2/c20-8-5-1-29-34(25,26)33-35(27,28)30-2-6-9(21)11(23)15(32-6)19-4-17-12-7(13(19)24)16-3-18(12)14(31-5)10(8)22/h3-6,8-11,14-15,20-23H,1-2H2,(H,25,26)(H,27,28)/t5?,6-,8-,9-,10-,11-,14-,15-/m1/s1" N1C InChIKey InChI 1.03 REBZYOYBILSKBL-ATYUDWGKSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N1C "SYSTEMATIC NAME" ACDLabs 11.02 "(2R,3R,4S,5R,8S,10S,13S,14S,15R,16R)-3,4,8,10,14,15-hexahydroxy-7,9,11,25,26-pentaoxa-1,17,19,22-tetraaza-8,10-diphosphapentacyclo[18.3.1.1~2,5~.1~13,16~.0~17,21~]hexacosa-18,20,22-trien-24-one 8,10-dioxide (non-preferred name)" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N1C "Create component" 2007-04-13 RCSB N1C "Modify descriptor" 2011-06-04 RCSB #