data_N1Y # _chem_comp.id N1Y _chem_comp.name "2-chloro-5-{[(2E)-2-(nitromethylidene)imidazolidin-1-yl]methyl}pyridine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H11 Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-21 _chem_comp.pdbx_modified_date 2015-01-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 254.673 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N1Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WTL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N1Y CL CL CL 0 0 N N N 28.847 -23.949 -33.641 -4.835 -0.874 0.823 CL N1Y 1 N1Y C1 C1 C 0 1 Y N N 29.503 -24.902 -32.393 -3.348 -0.324 0.117 C1 N1Y 2 N1Y N1 N1 N 0 1 Y N N 30.105 -24.200 -31.371 -3.142 0.969 -0.047 N1 N1Y 3 N1Y C2 C2 C 0 1 Y N N 30.660 -24.938 -30.345 -2.027 1.431 -0.578 C2 N1Y 4 N1Y C3 C3 C 0 1 Y N N 30.641 -26.359 -30.289 -1.026 0.569 -0.984 C3 N1Y 5 N1Y C4 C4 C 0 1 N N N 31.274 -27.162 -29.154 0.245 1.107 -1.590 C4 N1Y 6 N1Y N2 N2 N 0 1 N N N 30.763 -26.881 -27.811 1.226 1.350 -0.530 N2 N1Y 7 N1Y C5 C5 C 0 1 Y N N 29.998 -27.026 -31.375 -1.206 -0.797 -0.828 C5 N1Y 8 N1Y C6 C6 C 0 1 Y N N 29.419 -26.299 -32.444 -2.388 -1.246 -0.261 C6 N1Y 9 N1Y C7 C7 C 0 1 N N N 29.573 -27.280 -27.191 2.153 0.433 -0.067 C7 N1Y 10 N1Y C8 C8 C 0 1 N N N 28.611 -28.046 -27.751 2.269 -0.807 -0.537 C8 N1Y 11 N1Y N3 N3 N 0 1 N N N 29.568 -26.752 -25.924 2.945 0.954 0.940 N3 N1Y 12 N1Y C9 C9 C 0 1 N N N 30.740 -25.972 -25.606 2.538 2.342 1.197 C9 N1Y 13 N1Y C10 C10 C 0 1 N N N 31.581 -26.051 -26.902 1.390 2.608 0.209 C10 N1Y 14 N1Y N4 N4 N 1 1 N N N 27.389 -28.438 -27.076 3.293 -1.718 0.023 N4 N1Y 15 N1Y O1 O1 O 0 1 N N N 27.154 -28.077 -25.903 4.030 -1.332 0.913 O1 N1Y 16 N1Y O2 O2 O -1 1 N N N 26.633 -29.137 -27.754 3.399 -2.852 -0.406 O2 N1Y 17 N1Y H1 H1 H 0 1 N N N 31.137 -24.404 -29.536 -1.894 2.497 -0.697 H1 N1Y 18 N1Y H2 H2 H 0 1 N N N 31.107 -28.229 -29.362 0.646 0.381 -2.297 H2 N1Y 19 N1Y H3 H3 H 0 1 N N N 32.354 -26.953 -29.154 0.032 2.041 -2.110 H3 N1Y 20 N1Y H4 H4 H 0 1 N N N 29.952 -28.105 -31.382 -0.441 -1.494 -1.137 H4 N1Y 21 N1Y H5 H5 H 0 1 N N N 28.932 -26.802 -33.266 -2.560 -2.303 -0.120 H5 N1Y 22 N1Y H6 H6 H 0 1 N N N 28.762 -28.388 -28.764 1.615 -1.149 -1.326 H6 N1Y 23 N1Y H8 H8 H 0 1 N N N 31.285 -26.408 -24.755 2.190 2.450 2.225 H8 N1Y 24 N1Y H9 H9 H 0 1 N N N 32.554 -26.526 -26.708 1.655 3.417 -0.473 H9 N1Y 25 N1Y H7 H7 H 0 1 N N N 28.765 -26.164 -25.832 3.654 0.480 1.401 H7 N1Y 26 N1Y H10 H10 H 0 1 N N N 30.470 -24.931 -25.374 3.367 3.022 1.005 H10 N1Y 27 N1Y H11 H11 H 0 1 N N N 31.741 -25.049 -27.326 0.475 2.852 0.750 H11 N1Y 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N1Y CL C1 SING N N 1 N1Y C6 C1 DOUB Y N 2 N1Y C6 C5 SING Y N 3 N1Y C1 N1 SING Y N 4 N1Y C5 C3 DOUB Y N 5 N1Y N1 C2 DOUB Y N 6 N1Y C2 C3 SING Y N 7 N1Y C3 C4 SING N N 8 N1Y C4 N2 SING N N 9 N1Y N2 C7 SING N N 10 N1Y N2 C10 SING N N 11 N1Y O2 N4 SING N N 12 N1Y C8 C7 DOUB N E 13 N1Y C8 N4 SING N N 14 N1Y C7 N3 SING N N 15 N1Y N4 O1 DOUB N N 16 N1Y C10 C9 SING N N 17 N1Y N3 C9 SING N N 18 N1Y C2 H1 SING N N 19 N1Y C4 H2 SING N N 20 N1Y C4 H3 SING N N 21 N1Y C5 H4 SING N N 22 N1Y C6 H5 SING N N 23 N1Y C8 H6 SING N N 24 N1Y C9 H8 SING N N 25 N1Y C10 H9 SING N N 26 N1Y N3 H7 SING N N 27 N1Y C9 H10 SING N N 28 N1Y C10 H11 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N1Y SMILES ACDLabs 12.01 "[O-][N+](=O)/C=C1\NCCN1Cc2cnc(Cl)cc2" N1Y InChI InChI 1.03 "InChI=1S/C10H11ClN4O2/c11-9-2-1-8(5-13-9)6-14-4-3-12-10(14)7-15(16)17/h1-2,5,7,12H,3-4,6H2/b10-7+" N1Y InChIKey InChI 1.03 ALNDHUQPXHHNON-JXMROGBWSA-N N1Y SMILES_CANONICAL CACTVS 3.385 "[O-][N+](=O)\C=C\1NCCN\1Cc2ccc(Cl)nc2" N1Y SMILES CACTVS 3.385 "[O-][N+](=O)C=C1NCCN1Cc2ccc(Cl)nc2" N1Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ncc1CN\2CCN/C2=C\[N+](=O)[O-])Cl" N1Y SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(ncc1CN2CCNC2=C[N+](=O)[O-])Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N1Y "SYSTEMATIC NAME" ACDLabs 12.01 "2-chloro-5-{[(2E)-2-(nitromethylidene)imidazolidin-1-yl]methyl}pyridine" N1Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-chloranyl-5-[[(2E)-2-(nitromethylidene)imidazolidin-1-yl]methyl]pyridine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N1Y "Create component" 2014-04-21 PDBJ N1Y "Initial release" 2015-02-04 RCSB #