data_N28 # _chem_comp.id N28 _chem_comp.name "4-[[[4-(aminomethyl)phenyl]carbamoyl-(4-oxidanylbutyl)amino]methyl]-~{N}-oxidanyl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H26 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-11-07 _chem_comp.pdbx_modified_date 2020-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.445 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N28 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6TCY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N28 N1 N1 N 0 1 N N N -6.095 -16.618 11.430 5.646 -4.821 0.409 N1 N28 1 N28 C1 C1 C 0 1 N N N -5.256 -15.402 11.451 6.213 -3.467 0.332 C1 N28 2 N28 C2 C2 C 0 1 Y N N -5.218 -14.653 10.135 5.096 -2.455 0.328 C2 N28 3 N28 C3 C3 C 0 1 Y N N -6.336 -13.948 9.717 4.627 -1.941 1.523 C3 N28 4 N28 C4 C4 C 0 1 Y N N -6.342 -13.254 8.520 3.604 -1.013 1.523 C4 N28 5 N28 C5 C5 C 0 1 Y N N -5.216 -13.244 7.711 3.047 -0.596 0.321 C5 N28 6 N28 N2 N2 N 0 1 N N N -5.270 -12.525 6.494 2.007 0.340 0.318 N2 N28 7 N28 C6 C6 C 0 1 N N N -4.603 -12.823 5.353 1.044 0.274 -0.622 C6 N28 8 N28 O1 O1 O 0 1 N N N -3.778 -13.741 5.307 1.024 -0.653 -1.408 O1 N28 9 N28 N3 N3 N 0 1 N N N -4.836 -12.081 4.230 0.102 1.237 -0.692 N3 N28 10 N28 C7 C7 C 0 1 N N N -4.332 -12.556 2.930 0.126 2.354 0.255 C7 N28 11 N28 C8 C8 C 0 1 N N N -5.354 -13.331 2.108 0.969 3.494 -0.322 C8 N28 12 N28 C9 C9 C 0 1 N N N -6.663 -13.610 2.846 0.993 4.661 0.667 C9 N28 13 N28 C10 C10 C 0 1 N N N -7.495 -14.724 2.243 1.836 5.800 0.090 C10 N28 14 N28 O2 O2 O 0 1 N N N -8.203 -14.286 1.101 1.859 6.890 1.014 O2 N28 15 N28 C11 C11 C 0 1 N N N -5.554 -10.800 4.213 -0.945 1.165 -1.714 C11 N28 16 N28 C12 C12 C 0 1 Y N N -4.715 -9.562 4.476 -2.125 0.401 -1.171 C12 N28 17 N28 C13 C13 C 0 1 Y N N -5.295 -8.312 4.324 -2.189 -0.972 -1.331 C13 N28 18 N28 C14 C14 C 0 1 Y N N -4.579 -7.158 4.573 -3.267 -1.677 -0.837 C14 N28 19 N28 C15 C15 C 0 1 Y N N -3.248 -7.203 4.949 -4.294 -1.002 -0.175 C15 N28 20 N28 C16 C16 C 0 1 N N N -2.646 -5.856 5.238 -5.452 -1.752 0.357 C16 N28 21 N28 O3 O3 O 0 1 N N N -3.327 -4.946 5.706 -5.511 -2.958 0.219 O3 N28 22 N28 N4 N4 N 0 1 N N N -1.368 -5.661 4.972 -6.442 -1.097 0.996 N4 N28 23 N28 O4 O4 O 0 1 N N N -0.988 -4.436 4.455 -7.551 -1.815 1.506 O4 N28 24 N28 C17 C17 C 0 1 Y N N -2.662 -8.453 5.119 -4.223 0.383 -0.017 C17 N28 25 N28 C18 C18 C 0 1 Y N N -3.381 -9.617 4.870 -3.137 1.075 -0.511 C18 N28 26 N28 C19 C19 C 0 1 Y N N -4.082 -13.926 8.127 3.521 -1.114 -0.877 C19 N28 27 N28 C20 C20 C 0 1 Y N N -4.088 -14.621 9.327 4.547 -2.038 -0.870 C20 N28 28 N28 H1 H1 H 0 1 N N N -6.071 -17.056 12.329 4.995 -4.983 -0.344 H1 N28 29 N28 H27 H2 H 0 1 N N N -7.037 -16.369 11.206 6.375 -5.518 0.413 H27 N28 30 N28 H4 H4 H 0 1 N N N -4.228 -15.696 11.711 6.857 -3.294 1.194 H4 N28 31 N28 H3 H5 H 0 1 N N N -5.650 -14.724 12.223 6.795 -3.369 -0.583 H3 N28 32 N28 H5 H6 H 0 1 N N N -7.220 -13.940 10.338 5.060 -2.266 2.458 H5 N28 33 N28 H6 H7 H 0 1 N N N -7.228 -12.717 8.214 3.237 -0.613 2.457 H6 N28 34 N28 H7 H8 H 0 1 N N N -5.859 -11.717 6.474 1.979 1.037 0.993 H7 N28 35 N28 H9 H9 H 0 1 N N N -3.468 -13.212 3.114 -0.891 2.706 0.428 H9 N28 36 N28 H8 H10 H 0 1 N N N -4.010 -11.682 2.345 0.561 2.022 1.198 H8 N28 37 N28 H11 H11 H 0 1 N N N -4.907 -14.294 1.820 1.986 3.142 -0.495 H11 N28 38 N28 H10 H12 H 0 1 N N N -5.584 -12.748 1.204 0.534 3.826 -1.264 H10 N28 39 N28 H12 H13 H 0 1 N N N -6.422 -13.884 3.884 -0.024 5.012 0.840 H12 N28 40 N28 H13 H14 H 0 1 N N N -7.265 -12.689 2.840 1.428 4.329 1.610 H13 N28 41 N28 H15 H15 H 0 1 N N N -8.215 -15.079 2.995 2.853 5.449 -0.083 H15 N28 42 N28 H14 H16 H 0 1 N N N -6.829 -15.551 1.955 1.401 6.132 -0.852 H14 N28 43 N28 H16 H17 H 0 1 N N N -8.713 -15.006 0.748 2.376 7.650 0.713 H16 N28 44 N28 H17 H18 H 0 1 N N N -6.018 -10.688 3.222 -1.258 2.173 -1.985 H17 N28 45 N28 H18 H19 H 0 1 N N N -6.339 -10.844 4.982 -0.557 0.656 -2.596 H18 N28 46 N28 H19 H20 H 0 1 N N N -6.324 -8.240 4.005 -1.394 -1.492 -1.843 H19 N28 47 N28 H20 H21 H 0 1 N N N -5.068 -6.200 4.472 -3.316 -2.749 -0.962 H20 N28 48 N28 H21 H22 H 0 1 N N N -0.693 -6.379 5.140 -6.395 -0.135 1.107 H21 N28 49 N28 H22 H23 H 0 1 N N N -1.677 -3.800 4.607 -8.209 -1.261 1.947 H22 N28 50 N28 H23 H24 H 0 1 N N N -1.636 -8.520 5.449 -5.015 0.910 0.494 H23 N28 51 N28 H24 H25 H 0 1 N N N -2.898 -10.576 4.984 -3.079 2.146 -0.386 H24 N28 52 N28 H25 H26 H 0 1 N N N -3.192 -13.916 7.515 3.090 -0.791 -1.813 H25 N28 53 N28 H26 H27 H 0 1 N N N -3.198 -15.147 9.639 4.917 -2.440 -1.802 H26 N28 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N28 O2 C10 SING N N 1 N28 C8 C9 SING N N 2 N28 C8 C7 SING N N 3 N28 C10 C9 SING N N 4 N28 C7 N3 SING N N 5 N28 C11 N3 SING N N 6 N28 C11 C12 SING N N 7 N28 N3 C6 SING N N 8 N28 C13 C12 DOUB Y N 9 N28 C13 C14 SING Y N 10 N28 O4 N4 SING N N 11 N28 C12 C18 SING Y N 12 N28 C14 C15 DOUB Y N 13 N28 C18 C17 DOUB Y N 14 N28 C15 C17 SING Y N 15 N28 C15 C16 SING N N 16 N28 N4 C16 SING N N 17 N28 C16 O3 DOUB N N 18 N28 O1 C6 DOUB N N 19 N28 C6 N2 SING N N 20 N28 N2 C5 SING N N 21 N28 C5 C19 DOUB Y N 22 N28 C5 C4 SING Y N 23 N28 C19 C20 SING Y N 24 N28 C4 C3 DOUB Y N 25 N28 C20 C2 DOUB Y N 26 N28 C3 C2 SING Y N 27 N28 C2 C1 SING N N 28 N28 N1 C1 SING N N 29 N28 N1 H1 SING N N 30 N28 N1 H27 SING N N 31 N28 C1 H4 SING N N 32 N28 C1 H3 SING N N 33 N28 C3 H5 SING N N 34 N28 C4 H6 SING N N 35 N28 N2 H7 SING N N 36 N28 C7 H9 SING N N 37 N28 C7 H8 SING N N 38 N28 C8 H11 SING N N 39 N28 C8 H10 SING N N 40 N28 C9 H12 SING N N 41 N28 C9 H13 SING N N 42 N28 C10 H15 SING N N 43 N28 C10 H14 SING N N 44 N28 O2 H16 SING N N 45 N28 C11 H17 SING N N 46 N28 C11 H18 SING N N 47 N28 C13 H19 SING N N 48 N28 C14 H20 SING N N 49 N28 N4 H21 SING N N 50 N28 O4 H22 SING N N 51 N28 C17 H23 SING N N 52 N28 C18 H24 SING N N 53 N28 C19 H25 SING N N 54 N28 C20 H26 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N28 InChI InChI 1.03 "InChI=1S/C20H26N4O4/c21-13-15-5-9-18(10-6-15)22-20(27)24(11-1-2-12-25)14-16-3-7-17(8-4-16)19(26)23-28/h3-10,25,28H,1-2,11-14,21H2,(H,22,27)(H,23,26)" N28 InChIKey InChI 1.03 VTRGFHYHEAEHGS-UHFFFAOYSA-N N28 SMILES_CANONICAL CACTVS 3.385 "NCc1ccc(NC(=O)N(CCCCO)Cc2ccc(cc2)C(=O)NO)cc1" N28 SMILES CACTVS 3.385 "NCc1ccc(NC(=O)N(CCCCO)Cc2ccc(cc2)C(=O)NO)cc1" N28 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN)NC(=O)N(CCCCO)Cc2ccc(cc2)C(=O)NO" N28 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN)NC(=O)N(CCCCO)Cc2ccc(cc2)C(=O)NO" # _pdbx_chem_comp_identifier.comp_id N28 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[[4-(aminomethyl)phenyl]carbamoyl-(4-oxidanylbutyl)amino]methyl]-~{N}-oxidanyl-benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N28 "Create component" 2019-11-07 PDBE N28 "Initial release" 2020-11-04 RCSB ##