data_N3A # _chem_comp.id N3A _chem_comp.name ;2,4-dihydroxy-3-({3-[(2R,4aR,8S,8aR,9R)-9-hydroxy-8-methyl-3-methylidene-7-oxo-1,3,4,7,8,8a-hexahydro-2H-2,4a-ethanonap hthalen-8-yl]propanoyl}amino)benzoic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 N O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Platencin A1" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-06-03 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 441.474 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N3A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3HO9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N3A C1 C1 C 0 1 N N R -0.204 72.312 68.169 3.981 -2.277 -0.526 C1 N3A 1 N3A O19 O19 O 0 1 N N N -3.270 68.695 72.070 1.597 2.793 1.550 O19 N3A 2 N3A O20 O20 O 0 1 N N N -5.748 67.647 68.726 -1.881 0.111 1.188 O20 N3A 3 N3A N28 N28 N 0 1 N N N -5.383 69.032 66.989 -2.220 0.986 -0.822 N28 N3A 4 N3A C11 C11 C 0 1 N N N -5.245 68.610 68.234 -1.409 0.595 0.181 C11 N3A 5 N3A C2 C2 C 0 1 N N N -4.305 69.509 69.173 0.083 0.758 0.051 C2 N3A 6 N3A C3 C3 C 0 1 N N N -2.934 68.746 69.249 0.766 0.240 1.319 C3 N3A 7 N3A C4 C4 C 0 1 N N S -1.924 69.449 70.253 2.278 0.535 1.247 C4 N3A 8 N3A C5 C5 C 0 1 N N N -2.454 69.479 71.701 2.452 2.039 1.125 C5 N3A 9 N3A C6 C6 C 0 1 N N N -1.909 70.542 72.647 3.661 2.561 0.488 C6 N3A 10 N3A C7 C7 C 0 1 N N N -1.123 71.571 72.148 4.484 1.771 -0.186 C7 N3A 11 N3A C8 C8 C 0 1 N N R -0.720 71.811 70.669 4.282 0.291 -0.319 C8 N3A 12 N3A C9 C9 C 0 1 N N R -1.633 70.909 69.728 2.854 -0.115 0.003 C9 N3A 13 N3A C10 C10 C 0 1 N N N -1.007 70.956 68.300 2.681 -1.627 -0.026 C10 N3A 14 N3A C14 C14 C 0 1 N N N -1.104 73.325 70.369 4.544 -0.108 -1.793 C14 N3A 15 N3A C15 C15 C 0 1 N N N -1.028 73.388 68.866 4.361 -1.617 -1.841 C15 N3A 16 N3A C17 C17 C 0 1 N N N -1.706 74.323 68.210 4.522 -2.304 -2.947 C17 N3A 17 N3A C18 C18 C 0 1 N N N -0.687 68.505 70.305 2.926 0.044 2.539 C18 N3A 18 N3A C28 C28 C 0 1 N N R 0.789 71.547 70.384 5.309 -0.446 0.539 C28 N3A 19 N3A C29 C29 C 0 1 N N N 1.141 72.097 68.975 5.083 -1.956 0.493 C29 N3A 20 N3A O30 O30 O 0 1 N N N -7.606 70.177 65.868 -4.015 2.825 -1.860 O30 N3A 21 N3A O31 O31 O 0 1 N N N -4.641 66.480 66.157 -3.228 -1.290 0.401 O31 N3A 22 N3A O32 O32 O 0 1 N N N -5.106 64.558 64.556 -7.330 -1.993 0.707 O32 N3A 23 N3A O33 O33 O 0 1 N N N -6.842 64.474 63.269 -5.232 -2.618 1.086 O33 N3A 24 N3A C21 C21 C 0 1 N N N -6.153 65.060 64.121 -5.999 -1.796 0.624 C21 N3A 25 N3A C22 C22 C 0 1 Y N N -6.567 66.365 64.561 -5.474 -0.585 -0.027 C22 N3A 26 N3A C23 C23 C 0 1 Y N N -5.775 67.059 65.588 -4.089 -0.376 -0.115 C23 N3A 27 N3A C24 C24 C 0 1 Y N N -6.204 68.308 65.974 -3.603 0.770 -0.731 C24 N3A 28 N3A C25 C25 C 0 1 Y N N -7.330 68.934 65.439 -4.491 1.704 -1.258 C25 N3A 29 N3A C26 C26 C 0 1 Y N N -8.145 68.271 64.451 -5.862 1.495 -1.169 C26 N3A 30 N3A C27 C27 C 0 1 Y N N -7.710 66.997 64.060 -6.354 0.361 -0.566 C27 N3A 31 N3A O34 O34 O 0 1 N N N 1.508 72.224 71.440 6.621 -0.169 0.027 O34 N3A 32 N3A H1 H1 H 0 1 N N N -0.006 72.598 67.125 3.858 -3.351 -0.647 H1 N3A 33 N3A HN28 HN28 H 0 0 N N N -4.917 69.873 66.715 -1.846 1.416 -1.607 HN28 N3A 34 N3A H2 H2 H 0 1 N N N -4.170 70.513 68.744 0.438 0.191 -0.810 H2 N3A 35 N3A H2A H2A H 0 1 N N N -4.746 69.653 70.171 0.323 1.813 -0.085 H2A N3A 36 N3A H3 H3 H 0 1 N N N -3.120 67.719 69.597 0.339 0.737 2.190 H3 N3A 37 N3A H3A H3A H 0 1 N N N -2.482 68.752 68.246 0.609 -0.836 1.402 H3A N3A 38 N3A H6 H6 H 0 1 N N N -2.134 70.495 73.702 3.891 3.616 0.570 H6 N3A 39 N3A H7 H7 H 0 1 N N N -0.751 72.284 72.869 5.353 2.215 -0.653 H7 N3A 40 N3A H9 H9 H 0 1 N N N -2.649 71.330 69.717 2.238 0.264 -0.852 H9 N3A 41 N3A H10 H10 H 0 1 N N N -1.800 70.913 67.539 1.872 -1.884 -0.715 H10 N3A 42 N3A H10A H10A H 0 0 N N N -0.337 70.097 68.146 2.444 -2.017 0.959 H10A N3A 43 N3A H14 H14 H 0 1 N N N -2.109 73.574 70.739 3.816 0.382 -2.439 H14 N3A 44 N3A H14A H14A H 0 0 N N N -0.445 74.049 70.870 5.556 0.166 -2.081 H14A N3A 45 N3A H17 H17 H 0 1 N N N -1.510 74.147 67.163 4.383 -3.375 -2.941 H17 N3A 46 N3A H17A H17A H 0 0 N N N -2.325 75.099 68.636 4.792 -1.799 -3.862 H17A N3A 47 N3A H18 H18 H 0 1 N N N -0.352 68.282 69.281 2.884 -1.044 2.575 H18 N3A 48 N3A H18A H18A H 0 0 N N N 0.127 68.997 70.858 3.967 0.368 2.569 H18A N3A 49 N3A H18B H18B H 0 0 N N N -0.962 67.568 70.812 2.391 0.457 3.394 H18B N3A 50 N3A H28 H28 H 0 1 N N N 1.052 70.479 70.378 5.274 -0.096 1.565 H28 N3A 51 N3A H29 H29 H 0 1 N N N 1.782 71.378 68.444 4.783 -2.309 1.479 H29 N3A 52 N3A H29A H29A H 0 0 N N N 1.681 73.051 69.068 6.008 -2.451 0.196 H29A N3A 53 N3A HO30 HO30 H 0 0 N N N -7.671 70.178 66.816 -3.934 2.751 -2.821 HO30 N3A 54 N3A HO31 HO31 H 0 0 N N N -3.982 66.348 65.486 -2.964 -1.979 -0.225 HO31 N3A 55 N3A HO32 HO32 H 0 0 N N N -4.961 63.716 64.140 -7.627 -2.804 1.143 HO32 N3A 56 N3A H26 H26 H 0 1 N N N -9.033 68.727 64.039 -6.545 2.224 -1.580 H26 N3A 57 N3A H27 H27 H 0 1 N N N -8.296 66.468 63.323 -7.420 0.201 -0.503 H27 N3A 58 N3A HO34 HO34 H 0 0 N N N 2.406 72.372 71.168 7.334 -0.601 0.518 HO34 N3A 59 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N3A C1 C10 SING N N 1 N3A C1 C15 SING N N 2 N3A C1 C29 SING N N 3 N3A C1 H1 SING N N 4 N3A C5 O19 DOUB N N 5 N3A C11 O20 DOUB N N 6 N3A C24 N28 SING N N 7 N3A N28 C11 SING N N 8 N3A N28 HN28 SING N N 9 N3A C11 C2 SING N N 10 N3A C2 C3 SING N N 11 N3A C2 H2 SING N N 12 N3A C2 H2A SING N N 13 N3A C3 C4 SING N N 14 N3A C3 H3 SING N N 15 N3A C3 H3A SING N N 16 N3A C9 C4 SING N N 17 N3A C4 C18 SING N N 18 N3A C4 C5 SING N N 19 N3A C5 C6 SING N N 20 N3A C7 C6 DOUB N N 21 N3A C6 H6 SING N N 22 N3A C8 C7 SING N N 23 N3A C7 H7 SING N N 24 N3A C9 C8 SING N N 25 N3A C14 C8 SING N N 26 N3A C28 C8 SING N N 27 N3A C10 C9 SING N N 28 N3A C9 H9 SING N N 29 N3A C10 H10 SING N N 30 N3A C10 H10A SING N N 31 N3A C15 C14 SING N N 32 N3A C14 H14 SING N N 33 N3A C14 H14A SING N N 34 N3A C17 C15 DOUB N N 35 N3A C17 H17 SING N N 36 N3A C17 H17A SING N N 37 N3A C18 H18 SING N N 38 N3A C18 H18A SING N N 39 N3A C18 H18B SING N N 40 N3A C29 C28 SING N N 41 N3A C28 O34 SING N N 42 N3A C28 H28 SING N N 43 N3A C29 H29 SING N N 44 N3A C29 H29A SING N N 45 N3A C25 O30 SING N N 46 N3A O30 HO30 SING N N 47 N3A C23 O31 SING N N 48 N3A O31 HO31 SING N N 49 N3A C21 O32 SING N N 50 N3A O32 HO32 SING N N 51 N3A O33 C21 DOUB N N 52 N3A C21 C22 SING N N 53 N3A C27 C22 DOUB Y N 54 N3A C22 C23 SING Y N 55 N3A C23 C24 DOUB Y N 56 N3A C25 C24 SING Y N 57 N3A C26 C25 DOUB Y N 58 N3A C27 C26 SING Y N 59 N3A C26 H26 SING N N 60 N3A C27 H27 SING N N 61 N3A O34 HO34 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N3A SMILES ACDLabs 10.04 "O=C(O)c1c(O)c(c(O)cc1)NC(=O)CCC4(C(=O)C=CC32C/C(=C)C(CC2O)CC34)C" N3A SMILES_CANONICAL CACTVS 3.341 "C[C@]1(CCC(=O)Nc2c(O)ccc(C(O)=O)c2O)[C@@H]3C[C@@H]4C[C@@H](O)[C@]3(CC4=C)C=CC1=O" N3A SMILES CACTVS 3.341 "C[C]1(CCC(=O)Nc2c(O)ccc(C(O)=O)c2O)[CH]3C[CH]4C[CH](O)[C]3(CC4=C)C=CC1=O" N3A SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@]1([C@@H]2C[C@@H]3C[C@H]([C@]2(CC3=C)C=CC1=O)O)CCC(=O)Nc4c(ccc(c4O)C(=O)O)O" N3A SMILES "OpenEye OEToolkits" 1.5.0 "CC1(C2CC3CC(C2(CC3=C)C=CC1=O)O)CCC(=O)Nc4c(ccc(c4O)C(=O)O)O" N3A InChI InChI 1.03 "InChI=1S/C24H27NO7/c1-12-11-24-8-5-17(27)23(2,16(24)9-13(12)10-18(24)28)7-6-19(29)25-20-15(26)4-3-14(21(20)30)22(31)32/h3-5,8,13,16,18,26,28,30H,1,6-7,9-11H2,2H3,(H,25,29)(H,31,32)/t13-,16+,18-,23+,24+/m1/s1" N3A InChIKey InChI 1.03 KCPPASJQWABQQM-XLJNEENLSA-N # _pdbx_chem_comp_identifier.comp_id N3A _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "2,4-dihydroxy-3-({3-[(2R,4aR,8S,8aR,9R)-9-hydroxy-8-methyl-3-methylidene-7-oxo-1,3,4,7,8,8a-hexahydro-2H-2,4a-ethanonaphthalen-8-yl]propanoyl}amino)benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N3A "Create component" 2009-06-03 RCSB N3A "Modify aromatic_flag" 2011-06-04 RCSB N3A "Modify descriptor" 2011-06-04 RCSB N3A "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id N3A _pdbx_chem_comp_synonyms.name "Platencin A1" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##