data_N3X # _chem_comp.id N3X _chem_comp.name "~{N}-[(1-methylindazol-6-yl)methyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H15 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 217.267 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N3X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AO7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N3X C1 C1 C 0 1 N N N N N N 11.828 5.023 44.361 3.271 2.585 -0.242 C1 N3X 1 N3X C5 C2 C 0 1 Y N N N N N 12.601 8.308 43.057 2.661 -0.984 0.257 C5 N3X 2 N3X C6 C3 C 0 1 Y N N N N N 12.193 9.612 42.724 1.775 -2.066 0.209 C6 N3X 3 N3X C7 C4 C 0 1 Y N N N N N 10.874 10.000 42.935 0.487 -1.866 -0.195 C7 N3X 4 N3X C8 C5 C 0 1 Y N N N N N 9.945 9.114 43.473 0.048 -0.599 -0.559 C8 N3X 5 N3X C11 C6 C 0 1 N N N N N N 6.657 8.130 43.012 -3.535 0.120 0.004 C11 N3X 6 N3X C13 C7 C 0 1 N N N N N N 5.673 7.784 41.911 -4.394 0.438 1.201 C13 N3X 7 N3X C14 C8 C 0 1 N N N N N N 5.046 6.403 42.059 -5.843 0.635 0.751 C14 N3X 8 N3X C15 C9 C 0 1 Y N N N N N 10.357 7.825 43.800 0.895 0.473 -0.520 C15 N3X 9 N3X C16 C10 C 0 1 Y N N N N N 11.688 7.446 43.582 2.215 0.299 -0.112 C16 N3X 10 N3X O12 O1 O 0 1 N N N N N N 6.577 7.603 44.121 -4.033 0.057 -1.100 O12 N3X 11 N3X N10 N1 N 0 1 N N N N N N 7.600 9.016 42.695 -2.214 -0.095 0.161 N10 N3X 12 N3X C9 C11 C 0 1 N N N N N N 8.517 9.542 43.698 -1.379 -0.404 -1.003 C9 N3X 13 N3X C4 C12 C 0 1 Y N N N N N 13.768 7.610 42.989 4.063 -0.837 0.635 C4 N3X 14 N3X N3 N2 N 0 1 Y N N N N N 13.638 6.371 43.439 4.385 0.417 0.493 N3 N3X 15 N3X N2 N3 N 0 1 Y N N N N N 12.335 6.272 43.810 3.283 1.146 0.033 N2 N3X 16 N3X H18 H1 H 0 1 N N N N N N 12.640 4.282 44.399 2.990 3.125 0.662 H18 N3X 17 N3X H19 H2 H 0 1 N N N N N N 11.445 5.199 45.377 4.263 2.902 -0.562 H19 N3X 18 N3X H17 H3 H 0 1 N N N N N N 11.016 4.644 43.723 2.549 2.797 -1.032 H17 N3X 19 N3X H21 H4 H 0 1 N N N N N N 12.902 10.311 42.305 2.109 -3.054 0.490 H21 N3X 20 N3X H22 H5 H 0 1 N N N N N N 10.566 11.003 42.678 -0.197 -2.700 -0.233 H22 N3X 21 N3X H26 H6 H 0 1 N N N N N N 6.202 7.823 40.948 -4.344 -0.385 1.913 H26 N3X 22 N3X H30 H7 H 0 1 N N N N N N 4.868 8.533 41.917 -4.033 1.351 1.674 H30 N3X 23 N3X H28 H8 H 0 1 N N N N N N 4.348 6.226 41.228 -6.464 0.866 1.616 H28 N3X 24 N3X H1 H9 H 0 1 N N N N N N 5.836 5.638 42.043 -5.893 1.459 0.038 H1 N3X 25 N3X H27 H10 H 0 1 N N N N N N 4.501 6.348 43.013 -6.204 -0.278 0.277 H27 N3X 26 N3X H29 H11 H 0 1 N N N N N N 9.654 7.121 44.220 0.541 1.453 -0.806 H29 N3X 27 N3X H25 H12 H 0 1 N N N N N N 7.680 9.327 41.748 -1.816 -0.045 1.044 H25 N3X 28 N3X H23 H13 H 0 1 N N N N N N 8.472 10.641 43.672 -1.429 0.419 -1.715 H23 N3X 29 N3X H24 H14 H 0 1 N N N N N N 8.196 9.185 44.688 -1.740 -1.317 -1.476 H24 N3X 30 N3X H20 H15 H 0 1 N N N N N N 14.693 8.019 42.612 4.718 -1.628 0.972 H20 N3X 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N3X C13 C14 SING N N 1 N3X C13 C11 SING N N 2 N3X N10 C11 SING N N 3 N3X N10 C9 SING N N 4 N3X C6 C7 DOUB Y N 5 N3X C6 C5 SING Y N 6 N3X C7 C8 SING Y N 7 N3X C4 C5 SING Y N 8 N3X C4 N3 DOUB Y N 9 N3X C11 O12 DOUB N N 10 N3X C5 C16 DOUB Y N 11 N3X N3 N2 SING Y N 12 N3X C8 C9 SING N N 13 N3X C8 C15 DOUB Y N 14 N3X C16 C15 SING Y N 15 N3X C16 N2 SING Y N 16 N3X N2 C1 SING N N 17 N3X C1 H18 SING N N 18 N3X C1 H19 SING N N 19 N3X C1 H17 SING N N 20 N3X C6 H21 SING N N 21 N3X C7 H22 SING N N 22 N3X C13 H26 SING N N 23 N3X C13 H30 SING N N 24 N3X C14 H28 SING N N 25 N3X C14 H1 SING N N 26 N3X C14 H27 SING N N 27 N3X C15 H29 SING N N 28 N3X N10 H25 SING N N 29 N3X C9 H23 SING N N 30 N3X C9 H24 SING N N 31 N3X C4 H20 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N3X InChI InChI 1.06 "InChI=1S/C12H15N3O/c1-3-12(16)13-7-9-4-5-10-8-14-15(2)11(10)6-9/h4-6,8H,3,7H2,1-2H3,(H,13,16)" N3X InChIKey InChI 1.06 BEDCFWJZXJLEPB-UHFFFAOYSA-N N3X SMILES_CANONICAL CACTVS 3.385 "CCC(=O)NCc1ccc2cnn(C)c2c1" N3X SMILES CACTVS 3.385 "CCC(=O)NCc1ccc2cnn(C)c2c1" N3X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)NCc1ccc2cnn(c2c1)C" N3X SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)NCc1ccc2cnn(c2c1)C" # _pdbx_chem_comp_identifier.comp_id N3X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1-methylindazol-6-yl)methyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N3X "Create component" 2022-08-11 PDBE N3X "Initial release" 2022-09-28 RCSB N3X "Modify descriptor" 2023-09-23 RCSB N3X "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id N3X _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #