data_N4U # _chem_comp.id N4U _chem_comp.name "~{N}-(2-methylpyrimidin-5-yl)propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H11 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 165.192 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N4U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AOF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N4U C1 C1 C 0 1 N N N N N N 12.969 9.966 44.205 4.246 0.678 -0.142 C1 N4U 1 N4U C2 C2 C 0 1 Y N N N N N 11.608 9.657 43.682 2.810 0.234 -0.031 C2 N4U 2 N4U C5 C3 C 0 1 Y N N N N N 9.176 9.112 42.746 0.260 -0.554 0.168 C5 N4U 3 N4U C7 C4 C 0 1 N N N N N N 6.997 8.016 42.851 -2.069 -0.106 -0.018 C7 N4U 4 N4U C10 C5 C 0 1 N N N N N N 4.936 6.634 42.332 -4.428 0.639 -0.200 C10 N4U 5 N4U C11 C6 C 0 1 Y N N N N N 9.688 10.400 42.696 1.260 -1.454 -0.192 C11 N4U 6 N4U C9 C7 C 0 1 N N N N N N 5.628 7.963 42.200 -3.504 -0.511 0.207 C9 N4U 7 N4U O8 O1 O 0 1 N N N N N N 7.275 7.368 43.863 -1.812 0.993 -0.461 O8 N4U 8 N4U N6 N1 N 0 1 N N N N N N 7.881 8.829 42.246 -1.073 -0.966 0.273 N6 N4U 9 N4U N12 N2 N 0 1 Y N N N N N 10.904 10.681 43.163 2.507 -1.023 -0.284 N12 N4U 10 N4U N3 N3 N 0 1 Y N N N N N 11.190 8.380 43.771 1.894 1.114 0.322 N3 N4U 11 N4U C4 C8 C 0 1 Y N N N N N 9.970 8.117 43.299 0.623 0.764 0.432 C4 N4U 12 N4U H14 H1 H 0 1 N N N N N N 13.179 11.037 44.071 4.743 0.545 0.818 H14 N4U 13 N4U H15 H2 H 0 1 N N N N N N 13.017 9.714 45.275 4.753 0.080 -0.900 H15 N4U 14 N4U H13 H3 H 0 1 N N N N N N 13.716 9.374 43.655 4.280 1.730 -0.427 H13 N4U 15 N4U H19 H4 H 0 1 N N N N N N 3.955 6.680 41.836 -4.199 1.519 0.401 H19 N4U 16 N4U H20 H5 H 0 1 N N N N N N 5.550 5.853 41.860 -4.277 0.870 -1.255 H20 N4U 17 N4U H1 H6 H 0 1 N N N N N N 4.797 6.397 43.397 -5.465 0.347 -0.037 H1 N4U 18 N4U H21 H7 H 0 1 N N N N N N 9.089 11.191 42.270 1.019 -2.484 -0.405 H21 N4U 19 N4U H18 H8 H 0 1 N N N N N N 5.746 8.186 41.129 -3.732 -1.391 -0.394 H18 N4U 20 N4U H22 H9 H 0 1 N N N N N N 4.994 8.731 42.667 -3.655 -0.742 1.262 H22 N4U 21 N4U H17 H10 H 0 1 N N N N N N 7.606 9.262 41.387 -1.281 -1.871 0.554 H17 N4U 22 N4U H16 H11 H 0 1 N N N N N N 9.592 7.107 43.348 -0.123 1.492 0.715 H16 N4U 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N4U C9 C10 SING N N 1 N4U C9 C7 SING N N 2 N4U N6 C5 SING N N 3 N4U N6 C7 SING N N 4 N4U C11 C5 DOUB Y N 5 N4U C11 N12 SING Y N 6 N4U C5 C4 SING Y N 7 N4U C7 O8 DOUB N N 8 N4U N12 C2 DOUB Y N 9 N4U C4 N3 DOUB Y N 10 N4U C2 N3 SING Y N 11 N4U C2 C1 SING N N 12 N4U C1 H14 SING N N 13 N4U C1 H15 SING N N 14 N4U C1 H13 SING N N 15 N4U C10 H19 SING N N 16 N4U C10 H20 SING N N 17 N4U C10 H1 SING N N 18 N4U C11 H21 SING N N 19 N4U C9 H18 SING N N 20 N4U C9 H22 SING N N 21 N4U N6 H17 SING N N 22 N4U C4 H16 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N4U InChI InChI 1.06 "InChI=1S/C8H11N3O/c1-3-8(12)11-7-4-9-6(2)10-5-7/h4-5H,3H2,1-2H3,(H,11,12)" N4U InChIKey InChI 1.06 FGDIXUKKWMCJCI-UHFFFAOYSA-N N4U SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1cnc(C)nc1" N4U SMILES CACTVS 3.385 "CCC(=O)Nc1cnc(C)nc1" N4U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cnc(nc1)C" N4U SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cnc(nc1)C" # _pdbx_chem_comp_identifier.comp_id N4U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(2-methylpyrimidin-5-yl)propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N4U "Create component" 2022-08-12 PDBE N4U "Initial release" 2022-09-28 RCSB N4U "Modify descriptor" 2023-09-23 RCSB N4U "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id N4U _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C10 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #