data_N52 # _chem_comp.id N52 _chem_comp.name "(2R)-2-(dihydroxymethyl)-2-hydroxy-3-oxobutyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H11 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-23 _chem_comp.pdbx_modified_date 2022-07-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.110 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N52 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UF5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N52 C11 C1 C 0 1 N N N -2.782 -5.512 12.460 1.541 1.321 -0.119 C11 N52 1 N52 C01 C2 C 0 1 N N N -4.692 -6.400 14.545 3.753 -1.162 -0.385 C01 N52 2 N52 C02 C3 C 0 1 N N N -4.928 -6.414 13.030 2.446 -0.943 0.331 C02 N52 3 N52 C03 C4 C 0 1 N N R -4.241 -5.428 12.073 1.336 -0.178 -0.343 C03 N52 4 N52 C04 C5 C 0 1 N N N -5.110 -4.314 12.617 -0.009 -0.604 0.249 C04 N52 5 N52 O05 O1 O 0 1 N N N -6.380 -4.562 12.133 -1.057 0.158 -0.354 O05 N52 6 N52 O07 O2 O 0 1 N N N -5.794 -3.240 9.977 -3.098 -1.500 -0.398 O07 N52 7 N52 O08 O3 O 0 1 N N N -6.969 -5.404 9.788 -2.778 0.142 1.492 O08 N52 8 N52 O09 O4 O 0 1 N N N -8.162 -3.466 10.745 -3.490 1.077 -0.741 O09 N52 9 N52 O10 O5 O 0 1 N N N -4.647 -6.368 11.179 1.349 -0.457 -1.745 O10 N52 10 N52 O12 O6 O 0 1 N N N -2.477 -5.760 11.116 1.469 1.609 1.278 O12 N52 11 N52 O13 O7 O 0 1 N N N -2.291 -4.357 13.020 2.822 1.707 -0.619 O13 N52 12 N52 O14 O8 O 0 1 N N N -5.719 -7.206 12.593 2.287 -1.381 1.446 O14 N52 13 N52 P06 P1 P 0 1 N N N -6.818 -4.141 10.616 -2.609 -0.027 0.032 P06 N52 14 N52 H012 H1 H 0 0 N N N -5.323 -7.164 15.022 3.710 -0.698 -1.370 H012 N52 15 N52 H013 H2 H 0 0 N N N -3.634 -6.616 14.753 4.563 -0.714 0.192 H013 N52 16 N52 H011 H3 H 0 0 N N N -4.950 -5.409 14.947 3.934 -2.231 -0.494 H011 N52 17 N52 H041 H4 H 0 0 N N N -5.109 -4.329 13.717 -0.173 -1.664 0.055 H041 N52 18 N52 H042 H5 H 0 0 N N N -4.748 -3.337 12.263 -0.005 -0.427 1.325 H042 N52 19 N52 H1 H6 H 0 1 N N N -5.457 -3.651 9.190 -3.015 -1.681 -1.344 H1 N52 20 N52 H2 H7 H 0 1 N N N -8.818 -3.974 10.281 -4.437 1.025 -0.556 H2 N52 21 N52 H101 H8 H 0 0 N N N -5.235 -6.979 11.607 1.224 -1.391 -1.961 H101 N52 22 N52 H121 H9 H 0 0 N N N -1.538 -5.870 11.019 2.186 1.220 1.797 H121 N52 23 N52 H131 H10 H 0 0 N N N -2.564 -4.304 13.928 3.020 2.647 -0.511 H131 N52 24 N52 H111 H11 H 0 0 N N N -2.605 -6.394 13.093 0.763 1.876 -0.645 H111 N52 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N52 O08 P06 DOUB N N 1 N52 O07 P06 SING N N 2 N52 P06 O09 SING N N 3 N52 P06 O05 SING N N 4 N52 O12 C11 SING N N 5 N52 O10 C03 SING N N 6 N52 C03 C11 SING N N 7 N52 C03 C04 SING N N 8 N52 C03 C02 SING N N 9 N52 O05 C04 SING N N 10 N52 C11 O13 SING N N 11 N52 O14 C02 DOUB N N 12 N52 C02 C01 SING N N 13 N52 C01 H012 SING N N 14 N52 C01 H013 SING N N 15 N52 C01 H011 SING N N 16 N52 C04 H041 SING N N 17 N52 C04 H042 SING N N 18 N52 O07 H1 SING N N 19 N52 O09 H2 SING N N 20 N52 O10 H101 SING N N 21 N52 O12 H121 SING N N 22 N52 O13 H131 SING N N 23 N52 C11 H111 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N52 SMILES ACDLabs 12.01 "O=P(O)(O)OCC(O)(C(O)O)C(C)=O" N52 InChI InChI 1.03 "InChI=1S/C5H11O8P/c1-3(6)5(9,4(7)8)2-13-14(10,11)12/h4,7-9H,2H2,1H3,(H2,10,11,12)/t5-/m0/s1" N52 InChIKey InChI 1.03 IYNPDRWOJYWTNN-YFKPBYRVSA-N N52 SMILES_CANONICAL CACTVS 3.385 "CC(=O)[C@@](O)(CO[P](O)(O)=O)C(O)O" N52 SMILES CACTVS 3.385 "CC(=O)[C](O)(CO[P](O)(O)=O)C(O)O" N52 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)C(COP(=O)(O)O)(C(O)O)O" N52 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)C(COP(=O)(O)O)(C(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N52 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-(dihydroxymethyl)-2-hydroxy-3-oxobutyl dihydrogen phosphate" N52 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-[bis(oxidanyl)methyl]-2-oxidanyl-3-oxidanylidene-butyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N52 "Create component" 2022-03-23 RCSB N52 "Initial release" 2022-07-20 RCSB #