data_N5N # _chem_comp.id N5N _chem_comp.name ;2-[[(2S)-4-[[(3S)-1-carbamimidoylpiperidin-3-yl]methylamino]-2-(naphthalen-2-ylsulfonylamino)-4-oxidanylidene-butanoyl] -cyclopropyl-amino]ethanoic acid ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H34 N6 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "NAPSAGATRAN; Ro-46-6240" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-06-11 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 558.650 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N5N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4AX9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N5N N1 N1 N 0 1 N N N 17.737 -12.975 21.127 1.451 -2.140 -0.544 N1 N5N 1 N5N C2 C2 C 0 1 N N N 18.683 -13.722 20.352 2.361 -3.092 -1.185 C2 N5N 2 N5N C3 C3 C 0 1 N N N 16.879 -13.615 22.019 1.332 -0.889 -1.031 C3 N5N 3 N5N C4 C4 C 0 1 N N N 17.659 -11.582 20.844 0.665 -2.549 0.622 C4 N5N 4 N5N C5 C5 C 0 1 N N N 20.070 -13.147 20.065 3.495 -3.668 -0.335 C5 N5N 5 N5N C6 C6 C 0 1 N N N 19.920 -14.328 20.977 2.304 -4.548 -0.718 C6 N5N 6 N5N C7 C7 C 0 1 N N S 16.946 -15.160 22.165 0.396 0.091 -0.372 C7 N5N 7 N5N O8 O8 O 0 1 N N N 16.058 -12.975 22.691 1.979 -0.552 -2.000 O8 N5N 8 N5N C9 C9 C 0 1 N N N 16.666 -11.627 19.679 1.445 -2.263 1.879 C9 N5N 9 N5N N10 N10 N 0 1 N N N 16.485 -15.646 23.411 0.776 1.456 -0.744 N10 N5N 10 N5N C11 C11 C 0 1 N N N 15.977 -15.656 21.055 -1.037 -0.184 -0.833 C11 N5N 11 N5N O12 O12 O 0 1 N N N 16.590 -10.557 18.856 0.919 -2.558 3.078 O12 N5N 12 N5N O13 O13 O 0 1 N N N 15.920 -12.553 19.365 2.545 -1.768 1.808 O13 N5N 13 N5N S14 S14 S 0 1 N N N 17.412 -16.746 24.138 1.765 2.339 0.247 S14 N5N 14 N5N C15 C15 C 0 1 N N N 14.484 -15.331 21.312 -1.987 0.714 -0.083 C15 N5N 15 N5N C16 C16 C 0 1 Y N N 18.743 -15.826 24.575 3.330 1.531 0.278 C16 N5N 16 N5N O17 O17 O 0 1 N N N 16.688 -17.072 25.291 1.971 3.587 -0.400 O17 N5N 17 N5N O18 O18 O 0 1 N N N 17.662 -17.684 23.135 1.228 2.223 1.557 O18 N5N 18 N5N N19 N19 N 0 1 N N N 13.887 -14.227 20.723 -3.311 0.647 -0.326 N19 N5N 19 N5N O20 O20 O 0 1 N N N 13.786 -16.085 22.030 -1.560 1.496 0.741 O20 N5N 20 N5N C21 C21 C 0 1 Y N N 20.040 -16.017 24.153 4.278 1.870 -0.639 C21 N5N 21 N5N C22 C22 C 0 1 Y N N 18.475 -14.750 25.465 3.581 0.558 1.243 C22 N5N 22 N5N C23 C23 C 0 1 N N N 12.499 -13.898 20.899 -4.234 1.520 0.404 C23 N5N 23 N5N C24 C24 C 0 1 Y N N 21.057 -15.140 24.618 5.528 1.227 -0.617 C24 N5N 24 N5N C25 C25 C 0 1 Y N N 19.433 -13.899 25.925 4.780 -0.086 1.294 C25 N5N 25 N5N C26 C26 C 0 1 N N S 12.190 -12.450 21.333 -5.667 1.245 -0.057 C26 N5N 26 N5N C27 C27 C 0 1 Y N N 20.748 -14.080 25.510 5.781 0.234 0.362 C27 N5N 27 N5N C28 C28 C 0 1 Y N N 22.399 -15.294 24.212 6.531 1.550 -1.547 C28 N5N 28 N5N C29 C29 C 0 1 N N N 12.576 -12.316 22.809 -6.065 -0.182 0.332 C29 N5N 29 N5N C30 C30 C 0 1 N N N 12.971 -11.434 20.502 -6.619 2.237 0.615 C30 N5N 30 N5N C31 C31 C 0 1 Y N N 21.761 -13.202 25.970 7.030 -0.410 0.383 C31 N5N 31 N5N C32 C32 C 0 1 Y N N 23.363 -14.435 24.658 7.729 0.906 -1.495 C32 N5N 32 N5N N33 N33 N 0 1 N N N 12.438 -10.966 23.338 -7.482 -0.385 -0.000 N33 N5N 33 N5N C34 C34 C 0 1 N N N 12.688 -10.032 21.030 -8.048 1.985 0.130 C34 N5N 34 N5N C35 C35 C 0 1 Y N N 23.047 -13.379 25.547 7.978 -0.071 -0.533 C35 N5N 35 N5N C36 C36 C 0 1 N N N 13.038 -9.916 22.512 -8.473 0.567 0.521 C36 N5N 36 N5N C37 C37 C 0 1 N N N 11.225 -10.771 24.116 -7.872 -1.444 -0.784 C37 N5N 37 N5N N38 N38 N 0 1 N N N 10.460 -11.953 24.333 -9.209 -1.688 -0.994 N38 N5N 38 N5N N39 N39 N 0 1 N N N 10.886 -9.605 24.572 -6.975 -2.218 -1.328 N39 N5N 39 N5N H2 H2 H 0 1 N N N 18.262 -14.309 19.522 2.565 -2.910 -2.240 H2 N5N 40 N5N H41C H41C H 0 0 N N N 17.267 -11.009 21.698 -0.273 -1.994 0.642 H41C N5N 41 N5N H42C H42C H 0 0 N N N 18.632 -11.168 20.540 0.453 -3.617 0.561 H42C N5N 42 N5N H51C H51C H 0 0 N N N 20.523 -13.274 19.071 4.446 -3.864 -0.830 H51C N5N 43 N5N H52C H52C H 0 0 N N N 20.355 -12.167 20.476 3.564 -3.337 0.702 H52C N5N 44 N5N H61C H61C H 0 0 N N N 20.101 -14.213 22.056 1.589 -4.797 0.067 H61C N5N 45 N5N H62C H62C H 0 0 N N N 20.268 -15.319 20.651 2.471 -5.324 -1.465 H62C N5N 46 N5N H7 H7 H 0 1 N N N 17.966 -15.508 21.946 0.457 -0.021 0.711 H7 N5N 47 N5N H10 H10 H 0 1 N N N 16.398 -14.865 24.029 0.449 1.842 -1.572 H10 N5N 48 N5N H111 H111 H 0 0 N N N 16.272 -15.185 20.106 -1.118 0.014 -1.902 H111 N5N 49 N5N H112 H112 H 0 0 N N N 16.081 -16.748 20.971 -1.289 -1.225 -0.636 H112 N5N 50 N5N H12 H12 H 0 1 N N N 15.955 -10.729 18.170 1.457 -2.356 3.856 H12 N5N 51 N5N H19 H19 H 0 1 N N N 14.449 -13.631 20.149 -3.652 0.022 -0.984 H19 N5N 52 N5N H21 H21 H 0 1 N N N 20.281 -16.824 23.477 4.071 2.628 -1.379 H21 N5N 53 N5N H22 H22 H 0 1 N N N 17.457 -14.600 25.794 2.814 0.311 1.961 H22 N5N 54 N5N H231 H231 H 0 0 N N N 11.988 -14.077 19.942 -4.152 1.322 1.473 H231 N5N 55 N5N H232 H232 H 0 0 N N N 12.089 -14.572 21.665 -3.982 2.562 0.207 H232 N5N 56 N5N H25 H25 H 0 1 N N N 19.176 -13.097 26.601 4.960 -0.837 2.049 H25 N5N 57 N5N H26 H26 H 0 1 N N N 11.112 -12.262 21.220 -5.728 1.358 -1.139 H26 N5N 58 N5N H28 H28 H 0 1 N N N 22.667 -16.098 23.543 6.352 2.305 -2.298 H28 N5N 59 N5N H291 H291 H 0 0 N N N 11.931 -12.985 23.397 -5.454 -0.895 -0.221 H291 N5N 60 N5N H292 H292 H 0 0 N N N 13.625 -12.626 22.921 -5.917 -0.323 1.403 H292 N5N 61 N5N H301 H301 H 0 0 N N N 14.048 -11.646 20.579 -6.574 2.107 1.697 H301 N5N 62 N5N H302 H302 H 0 0 N N N 12.658 -11.501 19.450 -6.322 3.255 0.360 H302 N5N 63 N5N H31 H31 H 0 1 N N N 21.518 -12.399 26.650 7.238 -1.168 1.123 H31 N5N 64 N5N H32 H32 H 0 1 N N N 24.383 -14.563 24.327 8.498 1.156 -2.211 H32 N5N 65 N5N H341 H341 H 0 0 N N N 13.289 -9.307 20.462 -8.722 2.707 0.591 H341 N5N 66 N5N H342 H342 H 0 0 N N N 11.620 -9.807 20.896 -8.087 2.091 -0.955 H342 N5N 67 N5N H35 H35 H 0 1 N N N 23.824 -12.713 25.891 8.937 -0.566 -0.514 H35 N5N 68 N5N H361 H361 H 0 0 N N N 12.685 -8.941 22.878 -9.451 0.347 0.092 H361 N5N 69 N5N H362 H362 H 0 0 N N N 14.132 -9.973 22.617 -8.521 0.486 1.607 H362 N5N 70 N5N H381 H381 H 0 0 N N N 9.612 -11.910 24.862 -9.874 -1.072 -0.650 H381 N5N 71 N5N H382 H382 H 0 0 N N N 10.771 -12.826 23.957 -9.487 -2.476 -1.487 H382 N5N 72 N5N H39 H39 H 0 1 N N N 10.031 -9.639 25.089 -7.251 -2.966 -1.881 H39 N5N 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N5N N1 C2 SING N N 1 N5N N1 C3 SING N N 2 N5N N1 C4 SING N N 3 N5N C2 C5 SING N N 4 N5N C2 C6 SING N N 5 N5N C3 C7 SING N N 6 N5N C3 O8 DOUB N N 7 N5N C4 C9 SING N N 8 N5N C5 C6 SING N N 9 N5N C7 N10 SING N N 10 N5N C7 C11 SING N N 11 N5N C9 O12 SING N N 12 N5N C9 O13 DOUB N N 13 N5N N10 S14 SING N N 14 N5N C11 C15 SING N N 15 N5N S14 C16 SING N N 16 N5N S14 O17 DOUB N N 17 N5N S14 O18 DOUB N N 18 N5N C15 N19 SING N N 19 N5N C15 O20 DOUB N N 20 N5N C16 C21 SING Y N 21 N5N C16 C22 DOUB Y N 22 N5N N19 C23 SING N N 23 N5N C21 C24 DOUB Y N 24 N5N C22 C25 SING Y N 25 N5N C23 C26 SING N N 26 N5N C24 C27 SING Y N 27 N5N C24 C28 SING Y N 28 N5N C25 C27 DOUB Y N 29 N5N C26 C29 SING N N 30 N5N C26 C30 SING N N 31 N5N C27 C31 SING Y N 32 N5N C28 C32 DOUB Y N 33 N5N C29 N33 SING N N 34 N5N C30 C34 SING N N 35 N5N C31 C35 DOUB Y N 36 N5N C32 C35 SING Y N 37 N5N N33 C36 SING N N 38 N5N N33 C37 SING N N 39 N5N C34 C36 SING N N 40 N5N C37 N38 SING N N 41 N5N C37 N39 DOUB N N 42 N5N C2 H2 SING N N 43 N5N C4 H41C SING N N 44 N5N C4 H42C SING N N 45 N5N C5 H51C SING N N 46 N5N C5 H52C SING N N 47 N5N C6 H61C SING N N 48 N5N C6 H62C SING N N 49 N5N C7 H7 SING N N 50 N5N N10 H10 SING N N 51 N5N C11 H111 SING N N 52 N5N C11 H112 SING N N 53 N5N O12 H12 SING N N 54 N5N N19 H19 SING N N 55 N5N C21 H21 SING N N 56 N5N C22 H22 SING N N 57 N5N C23 H231 SING N N 58 N5N C23 H232 SING N N 59 N5N C25 H25 SING N N 60 N5N C26 H26 SING N N 61 N5N C28 H28 SING N N 62 N5N C29 H291 SING N N 63 N5N C29 H292 SING N N 64 N5N C30 H301 SING N N 65 N5N C30 H302 SING N N 66 N5N C31 H31 SING N N 67 N5N C32 H32 SING N N 68 N5N C34 H341 SING N N 69 N5N C34 H342 SING N N 70 N5N C35 H35 SING N N 71 N5N C36 H361 SING N N 72 N5N C36 H362 SING N N 73 N5N N38 H381 SING N N 74 N5N N38 H382 SING N N 75 N5N N39 H39 SING N N 76 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N5N SMILES ACDLabs 12.01 "O=C(O)CN(C(=O)C(NS(=O)(=O)c2cc1ccccc1cc2)CC(=O)NCC3CCCN(C(=[N@H])N)C3)C4CC4" N5N InChI InChI 1.03 "InChI=1S/C26H34N6O6S/c27-26(28)31-11-3-4-17(15-31)14-29-23(33)13-22(25(36)32(16-24(34)35)20-8-9-20)30-39(37,38)21-10-7-18-5-1-2-6-19(18)12-21/h1-2,5-7,10,12,17,20,22,30H,3-4,8-9,11,13-16H2,(H3,27,28)(H,29,33)(H,34,35)/t17-,22-/m0/s1" N5N InChIKey InChI 1.03 BYDKEYCXCIVOOV-JTSKRJEESA-N N5N SMILES_CANONICAL CACTVS 3.370 "NC(=N)N1CCC[C@@H](CNC(=O)C[C@H](N[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N(CC(O)=O)C4CC4)C1" N5N SMILES CACTVS 3.370 "NC(=N)N1CCC[CH](CNC(=O)C[CH](N[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N(CC(O)=O)C4CC4)C1" N5N SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(/N)\N1CCC[C@H](C1)CNC(=O)C[C@@H](C(=O)N(CC(=O)O)C2CC2)NS(=O)(=O)c3ccc4ccccc4c3" N5N SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc2cc(ccc2c1)S(=O)(=O)NC(CC(=O)NCC3CCCN(C3)C(=N)N)C(=O)N(CC(=O)O)C4CC4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N5N "SYSTEMATIC NAME" ACDLabs 12.01 "N-{[(3S)-1-carbamimidoylpiperidin-3-yl]methyl}-N~2~-(naphthalen-2-ylsulfonyl)-L-asparaginyl-N-cyclopropylglycine" N5N "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[[(2S)-4-[[(3S)-1-carbamimidoylpiperidin-3-yl]methylamino]-2-(naphthalen-2-ylsulfonylamino)-4-oxidanylidene-butanoyl]-cyclopropyl-amino]ethanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N5N "Create component" 2012-06-11 EBI N5N "Other modification" 2014-05-09 EBI N5N "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 N5N NAPSAGATRAN ? ? 2 N5N Ro-46-6240 ? ? ##