data_N5O # _chem_comp.id N5O _chem_comp.name "5'-N-(2-HYDROXYL)ETHYL CARBOXYAMIDO ADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H16 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-N-(2-HYDROXYETHYL)TETRAHYDROFURAN-2-CARBOXAMIDE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-06-28 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.293 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N5O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N5O O53 O53 O 0 1 N N N -118.108 -37.356 63.631 -6.683 -0.437 1.004 O53 N5O 1 N5O C52 C52 C 0 1 N N N -118.461 -36.229 62.824 -6.693 0.466 -0.103 C52 N5O 2 N5O C51 C51 C 0 1 N N N -119.487 -36.648 61.769 -5.385 1.259 -0.126 C51 N5O 3 N5O "N5'" N5* N 0 1 N N N -119.149 -37.979 61.244 -4.266 0.348 -0.380 "N5'" N5O 4 N5O "C5'" C5* C 0 1 N N N -118.710 -37.918 59.989 -3.008 0.828 -0.443 "C5'" N5O 5 N5O "O5'" O5* O 0 1 N N N -118.710 -36.744 59.302 -2.802 2.013 -0.291 "O5'" N5O 6 N5O "C4'" C4* C 0 1 N N S -118.201 -39.190 59.307 -1.857 -0.109 -0.704 "C4'" N5O 7 N5O "O4'" O4* O 0 1 N N N -119.181 -39.649 58.361 -0.621 0.631 -0.812 "O4'" N5O 8 N5O "C3'" C3* C 0 1 N N S -116.933 -38.872 58.513 -1.647 -1.054 0.500 "C3'" N5O 9 N5O "O3'" O3* O 0 1 N N N -115.787 -39.196 59.304 -2.264 -2.320 0.256 "O3'" N5O 10 N5O "C2'" C2* C 0 1 N N R -117.026 -39.839 57.334 -0.110 -1.209 0.593 "C2'" N5O 11 N5O "O2'" O2* O 0 1 N N N -116.482 -41.108 57.705 0.267 -2.575 0.413 "O2'" N5O 12 N5O "C1'" C1* C 0 1 N N R -118.535 -39.972 57.118 0.424 -0.335 -0.564 "C1'" N5O 13 N5O N9 N9 N 0 1 Y N N -118.995 -39.046 56.056 1.659 0.342 -0.163 N9 N5O 14 N5O C8 C8 C 0 1 Y N N -119.511 -37.832 56.240 1.757 1.593 0.369 C8 N5O 15 N5O N7 N7 N 0 1 Y N N -119.835 -37.299 55.064 3.004 1.879 0.607 N7 N5O 16 N5O C5 C5 C 0 1 Y N N -119.522 -38.184 54.123 3.783 0.830 0.250 C5 N5O 17 N5O C4 C4 C 0 1 Y N N -118.985 -39.298 54.750 2.930 -0.167 -0.255 C4 N5O 18 N5O N3 N3 N 0 1 Y N N -118.599 -40.351 54.012 3.455 -1.310 -0.683 N3 N5O 19 N5O C2 C2 C 0 1 Y N N -118.716 -40.371 52.694 4.755 -1.509 -0.642 C2 N5O 20 N5O N1 N1 N 0 1 Y N N -119.216 -39.356 52.010 5.597 -0.600 -0.182 N1 N5O 21 N5O C6 C6 C 0 1 Y N N -119.634 -38.241 52.626 5.165 0.573 0.267 C6 N5O 22 N5O N6 N6 N 0 1 N N N -120.111 -37.209 51.936 6.054 1.519 0.746 N6 N5O 23 N5O HO53 HO53 H 0 0 N N N -118.030 -38.127 63.082 -7.523 -0.916 0.982 HO53 N5O 24 N5O H521 1H52 H 0 0 N N N -117.560 -35.845 62.323 -7.533 1.153 -0.003 H521 N5O 25 N5O H522 2H52 H 0 0 N N N -118.894 -35.445 63.462 -6.793 -0.098 -1.031 H522 N5O 26 N5O H511 1H51 H 0 0 N N N -119.477 -35.920 60.945 -5.242 1.752 0.835 H511 N5O 27 N5O H512 2H51 H 0 0 N N N -120.487 -36.680 62.226 -5.429 2.009 -0.916 H512 N5O 28 N5O "HN5'" HN5* H 0 0 N N N -119.238 -38.827 61.766 -4.430 -0.600 -0.501 "HN5'" N5O 29 N5O "H4'" H4* H 0 1 N N N -118.005 -39.949 60.079 -2.035 -0.685 -1.612 "H4'" N5O 30 N5O "H3'" H3* H 0 1 N N N -116.846 -37.817 58.216 -2.043 -0.606 1.411 "H3'" N5O 31 N5O "HO3'" HO3* H 0 0 N N N -115.024 -39.268 58.742 -3.210 -2.153 0.146 "HO3'" N5O 32 N5O "H2'" H2* H 0 1 N N N -116.480 -39.497 56.442 0.253 -0.836 1.551 "H2'" N5O 33 N5O "HO2'" HO2* H 0 0 N N N -116.361 -41.641 56.928 -0.145 -3.076 1.130 "HO2'" N5O 34 N5O "H1'" H1* H 0 1 N N N -118.783 -40.996 56.802 0.596 -0.944 -1.451 "H1'" N5O 35 N5O H8 H8 H 0 1 N N N -119.646 -37.353 57.198 0.923 2.251 0.564 H8 N5O 36 N5O H2 H2 H 0 1 N N N -118.391 -41.250 52.157 5.149 -2.449 -0.998 H2 N5O 37 N5O HN61 1HN6 H 0 0 N N N -120.211 -37.162 50.942 7.005 1.329 0.757 HN61 N5O 38 N5O HN62 2HN6 H 0 0 N N N -120.352 -36.489 52.586 5.727 2.374 1.068 HN62 N5O 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N5O O53 C52 SING N N 1 N5O O53 HO53 SING N N 2 N5O C52 C51 SING N N 3 N5O C52 H521 SING N N 4 N5O C52 H522 SING N N 5 N5O C51 "N5'" SING N N 6 N5O C51 H511 SING N N 7 N5O C51 H512 SING N N 8 N5O "N5'" "C5'" SING N N 9 N5O "N5'" "HN5'" SING N N 10 N5O "C5'" "O5'" DOUB N N 11 N5O "C5'" "C4'" SING N N 12 N5O "C4'" "O4'" SING N N 13 N5O "C4'" "C3'" SING N N 14 N5O "C4'" "H4'" SING N N 15 N5O "O4'" "C1'" SING N N 16 N5O "C3'" "O3'" SING N N 17 N5O "C3'" "C2'" SING N N 18 N5O "C3'" "H3'" SING N N 19 N5O "O3'" "HO3'" SING N N 20 N5O "C2'" "O2'" SING N N 21 N5O "C2'" "C1'" SING N N 22 N5O "C2'" "H2'" SING N N 23 N5O "O2'" "HO2'" SING N N 24 N5O "C1'" N9 SING N N 25 N5O "C1'" "H1'" SING N N 26 N5O N9 C8 SING Y N 27 N5O N9 C4 SING Y N 28 N5O C8 N7 DOUB Y N 29 N5O C8 H8 SING N N 30 N5O N7 C5 SING Y N 31 N5O C5 C4 DOUB Y N 32 N5O C5 C6 SING Y N 33 N5O C4 N3 SING Y N 34 N5O N3 C2 DOUB Y N 35 N5O C2 N1 SING Y N 36 N5O C2 H2 SING N N 37 N5O N1 C6 DOUB Y N 38 N5O C6 N6 SING N N 39 N5O N6 HN61 SING N N 40 N5O N6 HN62 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N5O SMILES ACDLabs 10.04 "O=C(NCCO)C3OC(n2cnc1c(ncnc12)N)C(O)C3O" N5O SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]([C@@H](O)[C@H]3O)C(=O)NCCO" N5O SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH]([CH](O)[CH]3O)C(=O)NCCO" N5O SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C(=O)NCCO)O)O)N" N5O SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)C(=O)NCCO)O)O)N" N5O InChI InChI 1.03 "InChI=1S/C12H16N6O5/c13-9-5-10(16-3-15-9)18(4-17-5)12-7(21)6(20)8(23-12)11(22)14-1-2-19/h3-4,6-8,12,19-21H,1-2H2,(H,14,22)(H2,13,15,16)/t6-,7+,8-,12+/m0/s1" N5O InChIKey InChI 1.03 YLPQAZPIFSHMAY-FLNNQWSLSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N5O "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxy-N-(2-hydroxyethyl)tetrahydrofuran-2-carboxamide (non-preferred name)" N5O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-N-(2-hydroxyethyl)oxolane-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N5O "Create component" 2006-06-28 RCSB N5O "Modify descriptor" 2011-06-04 RCSB N5O "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id N5O _pdbx_chem_comp_synonyms.name "(2S,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-N-(2-HYDROXYETHYL)TETRAHYDROFURAN-2-CARBOXAMIDE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##