data_N5U # _chem_comp.id N5U _chem_comp.name "1-[(2~{R})-2-(3-methylimidazol-4-yl)piperidin-1-yl]propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 221.299 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N5U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AO8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N5U C1 C1 C 0 1 N N N N N N 9.147 5.991 45.181 -0.938 0.002 1.987 C1 N5U 1 N5U C3 C2 C 0 1 Y N N N N N 11.466 6.058 44.283 -2.997 0.265 0.570 C3 N5U 2 N5U N4 N1 N 0 1 Y N N N N N 12.330 6.886 43.733 -3.271 0.674 -0.638 N4 N5U 3 N5U C5 C3 C 0 1 Y N N N N N 11.694 8.105 43.648 -2.135 1.038 -1.251 C5 N5U 4 N5U C6 C4 C 0 1 Y N N N N N 10.407 7.992 44.167 -1.118 0.847 -0.390 C6 N5U 5 N5U C7 C5 C 0 1 N N R N N N 9.291 9.000 44.322 0.342 1.120 -0.649 C7 N5U 6 N5U C10 C6 C 0 1 N N N N N N 10.118 11.067 43.067 2.374 2.303 0.194 C10 N5U 7 N5U C11 C7 C 0 1 N N N N N N 9.039 10.837 42.028 3.071 0.964 0.444 C11 N5U 8 N5U C12 C8 C 0 1 N N N N N N 8.692 9.369 41.944 2.575 -0.064 -0.577 C12 N5U 9 N5U C14 C9 C 0 1 N N N N N N 7.067 8.338 43.572 0.478 -1.303 -0.328 C14 N5U 10 N5U C16 C10 C 0 1 N N N N N N 6.050 8.083 42.474 1.277 -2.550 -0.050 C16 N5U 11 N5U C17 C11 C 0 1 N N N N N N 4.964 7.120 42.901 0.326 -3.738 0.117 C17 N5U 12 N5U O15 O1 O 0 1 N N N N N N 6.780 8.028 44.727 -0.733 -1.358 -0.386 O15 N5U 13 N5U N13 N2 N 0 1 N N N N N N 8.278 8.879 43.264 1.108 -0.126 -0.511 N13 N5U 14 N5U C9 C12 C 0 1 N N N N N N 9.726 10.469 44.415 0.863 2.135 0.373 C9 N5U 15 N5U N2 N3 N 0 1 Y N N N N N 10.296 6.659 44.566 -1.663 0.356 0.765 N2 N5U 16 N5U H18 H1 H 0 1 N N N N N N 9.394 4.936 45.370 -0.722 -1.066 1.986 H18 N5U 17 N5U H19 H2 H 0 1 N N N N N N 8.901 6.486 46.132 -0.003 0.561 2.030 H19 N5U 18 N5U H20 H3 H 0 1 N N N N N N 8.283 6.050 44.503 -1.548 0.248 2.856 H20 N5U 19 N5U H21 H4 H 0 1 N N N N N N 11.673 5.017 44.484 -3.717 -0.085 1.295 H21 N5U 20 N5U H22 H5 H 0 1 N N N N N N 12.126 9.008 43.242 -2.051 1.418 -2.259 H22 N5U 21 N5U H8 H6 H 0 1 N N N N N N 8.790 8.767 45.273 0.466 1.519 -1.656 H8 N5U 22 N5U H25 H7 H 0 1 N N N N N N 11.052 10.597 42.724 2.743 3.043 0.904 H25 N5U 23 N5U H26 H8 H 0 1 N N N N N N 10.275 12.149 43.187 2.584 2.638 -0.822 H26 N5U 24 N5U H27 H9 H 0 1 N N N N N N 9.401 11.180 41.048 4.149 1.090 0.339 H27 N5U 25 N5U H28 H10 H 0 1 N N N N N N 8.140 11.406 42.307 2.842 0.617 1.452 H28 N5U 26 N5U H29 H11 H 0 1 N N N N N N 7.869 9.229 41.228 2.883 0.237 -1.578 H29 N5U 27 N5U H30 H12 H 0 1 N N N N N N 9.573 8.804 41.605 2.992 -1.043 -0.343 H30 N5U 28 N5U H31 H13 H 0 1 N N N N N N 6.571 7.662 41.601 1.954 -2.741 -0.883 H31 N5U 29 N5U H34 H14 H 0 1 N N N N N N 5.584 9.040 42.196 1.855 -2.416 0.864 H34 N5U 30 N5U H33 H15 H 0 1 N N N N N N 4.257 6.972 42.071 -0.350 -3.547 0.950 H33 N5U 31 N5U H1 H16 H 0 1 N N N N N N 5.416 6.155 43.174 -0.251 -3.872 -0.798 H1 N5U 32 N5U H32 H17 H 0 1 N N N N N N 4.429 7.533 43.769 0.904 -4.640 0.318 H32 N5U 33 N5U H23 H18 H 0 1 N N N N N N 10.591 10.535 45.091 0.370 3.095 0.218 H23 N5U 34 N5U H24 H19 H 0 1 N N N N N N 8.892 11.055 44.828 0.654 1.777 1.381 H24 N5U 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N5U C12 C11 SING N N 1 N5U C12 N13 SING N N 2 N5U C11 C10 SING N N 3 N5U C16 C17 SING N N 4 N5U C16 C14 SING N N 5 N5U C10 C9 SING N N 6 N5U N13 C14 SING N N 7 N5U N13 C7 SING N N 8 N5U C14 O15 DOUB N N 9 N5U C5 N4 SING Y N 10 N5U C5 C6 DOUB Y N 11 N5U N4 C3 DOUB Y N 12 N5U C6 C7 SING N N 13 N5U C6 N2 SING Y N 14 N5U C3 N2 SING Y N 15 N5U C7 C9 SING N N 16 N5U N2 C1 SING N N 17 N5U C1 H18 SING N N 18 N5U C1 H19 SING N N 19 N5U C1 H20 SING N N 20 N5U C3 H21 SING N N 21 N5U C5 H22 SING N N 22 N5U C7 H8 SING N N 23 N5U C10 H25 SING N N 24 N5U C10 H26 SING N N 25 N5U C11 H27 SING N N 26 N5U C11 H28 SING N N 27 N5U C12 H29 SING N N 28 N5U C12 H30 SING N N 29 N5U C16 H31 SING N N 30 N5U C16 H34 SING N N 31 N5U C17 H33 SING N N 32 N5U C17 H1 SING N N 33 N5U C17 H32 SING N N 34 N5U C9 H23 SING N N 35 N5U C9 H24 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N5U InChI InChI 1.06 "InChI=1S/C12H19N3O/c1-3-12(16)15-7-5-4-6-10(15)11-8-13-9-14(11)2/h8-10H,3-7H2,1-2H3/t10-/m1/s1" N5U InChIKey InChI 1.06 ZRIHLDNGAGNVRX-SNVBAGLBSA-N N5U SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CCCC[C@@H]1c2cncn2C" N5U SMILES CACTVS 3.385 "CCC(=O)N1CCCC[CH]1c2cncn2C" N5U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCC[C@@H]1c2cncn2C" N5U SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCCC1c2cncn2C" # _pdbx_chem_comp_identifier.comp_id N5U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(2~{R})-2-(3-methylimidazol-4-yl)piperidin-1-yl]propan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N5U "Create component" 2022-08-12 PDBE N5U "Initial release" 2022-09-28 RCSB N5U "Modify formula" 2023-05-15 PDBE N5U "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id N5U _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C17 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #