data_N6G # _chem_comp.id N6G _chem_comp.name "((2R,3S,4R,5S)-5-(2,6-DIAMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDROFURAN-2-YL)METHYL DIHYDROGEN PHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H15 N6 O7 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-10-24 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 362.236 _chem_comp.one_letter_code G _chem_comp.three_letter_code N6G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N6G P P P 0 1 N N N 62.840 37.340 21.735 6.145 3.523 -0.251 P N6G 1 N6G OP1 O1P O 0 1 N N N 62.444 35.937 22.040 6.560 4.952 -0.444 OP1 N6G 2 N6G OP2 O2P O 0 1 N N N 63.166 38.271 22.838 6.456 2.538 -1.495 OP2 N6G 3 N6G "O5'" O5* O 0 1 N N N 61.670 37.994 20.877 4.566 3.301 0.029 "O5'" N6G 4 N6G "C5'" C5* C 0 1 N N N 61.834 39.270 20.267 4.092 1.980 0.223 "C5'" N6G 5 N6G "C4'" C4* C 0 1 N N R 60.786 39.459 19.202 2.595 2.031 0.465 "C4'" N6G 6 N6G "O4'" O4* O 0 1 N N N 60.842 38.320 18.305 1.933 2.574 -0.689 "O4'" N6G 7 N6G "C1'" C1* C 0 1 N N R 59.538 37.993 17.866 0.622 1.976 -0.784 "C1'" N6G 8 N6G N9 N9 N 0 1 Y N N 59.298 36.579 18.144 0.424 1.450 -2.136 N9 N6G 9 N6G C4 C4 C 0 1 Y N N 58.444 35.740 17.462 1.376 0.903 -2.951 C4 N6G 10 N6G N3 N3 N 0 1 Y N N 57.635 36.092 16.439 2.680 0.735 -2.686 N3 N6G 11 N6G C2 C2 C 0 1 Y N N 56.951 35.059 15.971 3.305 0.161 -3.736 C2 N6G 12 N6G N2 N2 N 0 1 N N N 56.094 35.226 14.950 4.691 -0.067 -3.573 N2 N6G 13 N6G N1 N1 N 0 1 Y N N 57.057 33.784 16.467 2.785 -0.227 -4.926 N1 N6G 14 N6G C6 C6 C 0 1 Y N N 57.887 33.390 17.512 1.460 -0.028 -5.125 C6 N6G 15 N6G N6 N6 N 0 1 N N N 58.175 32.087 17.648 0.862 -0.409 -6.338 N6 N6G 16 N6G C5 C5 C 0 1 Y N N 58.619 34.496 18.030 0.705 0.559 -4.114 C5 N6G 17 N6G N7 N7 N 0 1 Y N N 59.541 34.555 19.068 -0.625 0.883 -4.021 N7 N6G 18 N6G C8 C8 C 0 1 Y N N 59.909 35.806 19.105 -0.761 1.414 -2.824 C8 N6G 19 N6G "C2'" C2* C 0 1 N N R 58.571 39.014 18.473 0.518 0.913 0.310 "C2'" N6G 20 N6G "O2'" O2* O 0 1 N N N 58.360 40.043 17.528 -0.210 1.445 1.415 "O2'" N6G 21 N6G "C3'" C3* C 0 1 N N S 59.348 39.482 19.700 1.969 0.663 0.677 "C3'" N6G 22 N6G "O3'" O3* O 0 1 N N N 58.991 40.821 20.060 2.143 0.197 1.998 "O3'" N6G 23 N6G OP3 O3P O 0 1 N Y N ? ? ? 6.843 2.773 1.000 OP3 N6G 24 N6G HOP2 2HOP H 0 0 N N N 64.095 38.471 22.821 7.351 2.548 -1.896 HOP2 N6G 25 N6G "H5'" 1H5* H 0 1 N N N 62.833 39.332 19.811 4.308 1.388 -0.668 "H5'" N6G 26 N6G "H5''" 2H5* H 0 0 N N N 61.727 40.056 21.029 4.597 1.541 1.085 "H5''" N6G 27 N6G "H4'" H4* H 0 1 N N N 61.015 40.435 18.749 2.399 2.693 1.317 "H4'" N6G 28 N6G "H1'" H1* H 0 1 N N N 59.385 38.078 16.780 -0.125 2.769 -0.673 "H1'" N6G 29 N6G HN21 1HN2 H 0 0 N N N 55.918 36.097 14.491 5.244 0.624 -3.111 HN21 N6G 30 N6G HN22 2HN2 H 0 0 N N N 55.657 34.358 14.713 5.104 -0.866 -4.005 HN22 N6G 31 N6G HN61 1HN6 H 0 0 N N N 58.849 31.696 18.275 -0.125 -0.285 -6.461 HN61 N6G 32 N6G HN62 2HN6 H 0 0 N N N 57.597 31.575 17.012 1.410 -0.886 -7.029 HN62 N6G 33 N6G H8 H8 H 0 1 N N N 60.621 36.196 19.818 -1.684 1.789 -2.403 H8 N6G 34 N6G "H2'" H2* H 0 1 N N N 57.570 38.642 18.737 -0.000 0.001 -0.003 "H2'" N6G 35 N6G "HO2'" 2HO* H 0 0 N N N 57.435 40.094 17.316 -1.062 1.768 1.071 "HO2'" N6G 36 N6G "H3'" H3* H 0 1 N N N 59.160 38.862 20.589 2.403 -0.065 -0.019 "H3'" N6G 37 N6G "HO3'" H3T H 0 0 N Y N 58.047 40.887 20.140 3.003 0.531 2.294 "HO3'" N6G 38 N6G HOP3 3HOP H 0 0 N N N 0.253 0.895 -0.194 7.814 2.842 1.113 HOP3 N6G 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N6G P OP1 DOUB N N 1 N6G P OP2 SING N N 2 N6G P "O5'" SING N N 3 N6G P OP3 SING N N 4 N6G OP2 HOP2 SING N N 5 N6G "O5'" "C5'" SING N N 6 N6G "C5'" "C4'" SING N N 7 N6G "C5'" "H5'" SING N N 8 N6G "C5'" "H5''" SING N N 9 N6G "C4'" "O4'" SING N N 10 N6G "C4'" "C3'" SING N N 11 N6G "C4'" "H4'" SING N N 12 N6G "O4'" "C1'" SING N N 13 N6G "C1'" N9 SING N N 14 N6G "C1'" "C2'" SING N N 15 N6G "C1'" "H1'" SING N N 16 N6G N9 C4 SING Y N 17 N6G N9 C8 SING Y N 18 N6G C4 N3 SING Y N 19 N6G C4 C5 DOUB Y N 20 N6G N3 C2 DOUB Y N 21 N6G C2 N2 SING N N 22 N6G C2 N1 SING Y N 23 N6G N2 HN21 SING N N 24 N6G N2 HN22 SING N N 25 N6G N1 C6 DOUB Y N 26 N6G C6 N6 SING N N 27 N6G C6 C5 SING Y N 28 N6G N6 HN61 SING N N 29 N6G N6 HN62 SING N N 30 N6G C5 N7 SING Y N 31 N6G N7 C8 DOUB Y N 32 N6G C8 H8 SING N N 33 N6G "C2'" "O2'" SING N N 34 N6G "C2'" "C3'" SING N N 35 N6G "C2'" "H2'" SING N N 36 N6G "O2'" "HO2'" SING N N 37 N6G "C3'" "O3'" SING N N 38 N6G "C3'" "H3'" SING N N 39 N6G "O3'" "HO3'" SING N N 40 N6G OP3 HOP3 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N6G SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1c(nc(nc12)N)N)C(O)C3O" N6G SMILES_CANONICAL CACTVS 3.341 "Nc1nc(N)c2ncn([C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)c2n1" N6G SMILES CACTVS 3.341 "Nc1nc(N)c2ncn([CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)c2n1" N6G SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N)N" N6G SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(nc(nc2n1C3C(C(C(O3)COP(=O)(O)O)O)O)N)N" N6G InChI InChI 1.03 "InChI=1S/C10H15N6O7P/c11-7-4-8(15-10(12)14-7)16(2-13-4)9-6(18)5(17)3(23-9)1-22-24(19,20)21/h2-3,5-6,9,17-18H,1H2,(H2,19,20,21)(H4,11,12,14,15)/t3-,5-,6-,9-/m1/s1" N6G InChIKey InChI 1.03 KQJMOJABMFAPCE-UUOKFMHZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N6G "SYSTEMATIC NAME" ACDLabs 10.04 ;2-aminoadenosine 5'-(dihydrogen phosphate) ; N6G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2,6-diaminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N6G "Create component" 2005-10-24 RCSB N6G "Modify descriptor" 2011-06-04 RCSB #