data_N6I # _chem_comp.id N6I _chem_comp.name "(3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 Cl N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-24 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 479.959 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N6I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UG5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N6I C11 C1 C 0 1 Y N N 12.179 -0.584 49.192 4.817 -1.045 -0.570 C11 N6I 1 N6I C12 C2 C 0 1 Y N N 12.470 -1.881 48.695 5.610 -0.834 -1.683 C12 N6I 2 N6I C13 C3 C 0 1 Y N N 11.680 -2.998 49.038 6.954 -1.153 -1.645 C13 N6I 3 N6I C14 C4 C 0 1 Y N N 10.593 -2.865 49.878 7.507 -1.683 -0.494 C14 N6I 4 N6I C15 C5 C 0 1 Y N N 10.314 -1.599 50.377 6.715 -1.893 0.620 C15 N6I 5 N6I C17 C6 C 0 1 Y N N 11.083 -0.465 50.066 5.369 -1.574 0.581 C17 N6I 6 N6I C18 C7 C 0 1 N N N 15.020 0.356 53.258 0.010 2.764 0.053 C18 N6I 7 N6I C19 C8 C 0 1 Y N N 13.762 0.948 53.817 -1.012 1.705 0.061 C19 N6I 8 N6I C21 C9 C 0 1 Y N N 12.136 1.731 55.214 -2.957 0.656 0.250 C21 N6I 9 N6I C22 C10 C 0 1 Y N N 11.364 2.115 56.353 -4.260 0.217 0.427 C22 N6I 10 N6I C23 C11 C 0 1 Y N N 10.096 2.709 56.168 -4.563 -1.123 0.243 C23 N6I 11 N6I C25 C12 C 0 1 N N N 9.293 2.171 58.568 -6.370 -2.246 -0.789 C25 N6I 12 N6I C26 C13 C 0 1 N N N 9.203 2.893 59.908 -7.785 -2.771 -0.532 C26 N6I 13 N6I C28 C14 C 0 1 N N N 8.166 4.743 58.823 -8.176 -1.004 1.037 C28 N6I 14 N6I C29 C15 C 0 1 N N N 8.216 4.032 57.484 -6.765 -0.461 0.796 C29 N6I 15 N6I C02 C16 C 0 1 N N N 16.050 -0.082 54.176 -0.354 4.116 0.245 C02 N6I 16 N6I C04 C17 C 0 1 N N N 17.577 -0.803 52.443 1.903 4.770 0.045 C04 N6I 17 N6I C05 C18 C 0 1 N N N 16.641 -0.391 51.520 2.307 3.494 -0.139 C05 N6I 18 N6I C06 C19 C 0 1 N N N 15.348 0.194 51.893 1.363 2.450 -0.139 C06 N6I 19 N6I C08 C20 C 0 1 N N N 14.491 0.525 49.476 3.186 0.816 -0.404 C08 N6I 20 N6I C09 C21 C 0 1 N N S 13.097 0.650 48.772 3.353 -0.691 -0.610 C09 N6I 21 N6I C30 C22 C 0 1 Y N N 9.620 2.878 54.839 -3.565 -2.026 -0.117 C30 N6I 22 N6I C31 C23 C 0 1 Y N N 10.373 2.502 53.701 -2.278 -1.605 -0.294 C31 N6I 23 N6I C32 C24 C 0 1 N N N 9.883 2.670 52.316 -1.209 -2.593 -0.684 C32 N6I 24 N6I C33 C25 C 0 1 Y N N 11.654 1.922 53.926 -1.952 -0.257 -0.113 C33 N6I 25 N6I N03 N1 N 0 1 N N N 17.300 -0.668 53.829 0.592 5.074 0.236 N03 N6I 26 N6I N07 N2 N 0 1 N N N 14.431 0.579 50.949 1.761 1.143 -0.324 N07 N6I 27 N6I N20 N3 N 0 1 Y N N 13.462 1.124 55.147 -2.340 1.890 0.352 N20 N6I 28 N6I N24 N4 N 0 1 N N N 9.334 3.060 57.371 -5.876 -1.570 0.419 N24 N6I 29 N6I N34 N5 N 0 1 Y N N 12.658 1.444 53.104 -0.792 0.440 -0.215 N34 N6I 30 N6I O01 O1 O 0 1 N N N 15.952 -0.005 55.437 -1.524 4.415 0.419 O01 N6I 31 N6I O10 O2 O 0 1 N N N 13.399 0.650 47.437 2.808 -1.061 -1.878 O10 N6I 32 N6I O27 O3 O 0 1 N N N 8.071 3.805 59.955 -8.627 -1.684 -0.138 O27 N6I 33 N6I CL16 CL1 CL 0 0 N N N 8.902 -1.469 51.409 7.408 -2.558 2.066 CL16 N6I 34 N6I H1 H1 H 0 1 N N N 13.317 -2.016 48.038 5.178 -0.421 -2.583 H1 N6I 35 N6I H2 H2 H 0 1 N N N 11.929 -3.970 48.638 7.573 -0.988 -2.515 H2 N6I 36 N6I H3 H3 H 0 1 N N N 9.981 -3.716 50.138 8.557 -1.932 -0.465 H3 N6I 37 N6I H4 H4 H 0 1 N N N 10.834 0.494 50.496 4.750 -1.738 1.451 H4 N6I 38 N6I H5 H5 H 0 1 N N N 11.748 1.952 57.349 -5.035 0.915 0.706 H5 N6I 39 N6I H6 H6 H 0 1 N N N 8.415 1.515 58.475 -5.712 -3.079 -1.035 H6 N6I 40 N6I H7 H7 H 0 1 N N N 10.208 1.561 58.571 -6.389 -1.540 -1.620 H7 N6I 41 N6I H8 H8 H 0 1 N N N 9.092 2.146 60.708 -8.177 -3.222 -1.444 H8 N6I 42 N6I H9 H9 H 0 1 N N N 10.129 3.466 60.067 -7.758 -3.517 0.262 H9 N6I 43 N6I H10 H10 H 0 1 N N N 9.080 5.344 58.938 -8.160 -1.699 1.877 H10 N6I 44 N6I H11 H11 H 0 1 N N N 7.288 5.405 58.839 -8.851 -0.178 1.261 H11 N6I 45 N6I H12 H12 H 0 1 N N N 8.330 4.787 56.693 -6.790 0.274 -0.009 H12 N6I 46 N6I H13 H13 H 0 1 N N N 7.269 3.491 57.341 -6.395 0.009 1.707 H13 N6I 47 N6I H14 H14 H 0 1 N N N 18.515 -1.226 52.115 2.635 5.563 0.043 H14 N6I 48 N6I H15 H15 H 0 1 N N N 16.870 -0.504 50.471 3.354 3.275 -0.285 H15 N6I 49 N6I H16 H16 H 0 1 N N N 14.940 -0.436 49.184 3.680 1.113 0.521 H16 N6I 50 N6I H17 H17 H 0 1 N N N 15.129 1.350 49.126 3.635 1.349 -1.242 H17 N6I 51 N6I H18 H18 H 0 1 N N N 12.610 1.584 49.090 2.828 -1.226 0.181 H18 N6I 52 N6I H19 H19 H 0 1 N N N 8.642 3.312 54.691 -3.812 -3.068 -0.257 H19 N6I 53 N6I H20 H20 H 0 1 N N N 9.334 1.768 52.009 -0.755 -3.011 0.214 H20 N6I 54 N6I H21 H21 H 0 1 N N N 9.213 3.541 52.267 -1.653 -3.395 -1.274 H21 N6I 55 N6I H22 H22 H 0 1 N N N 10.738 2.826 51.641 -0.445 -2.088 -1.275 H22 N6I 56 N6I H23 H23 H 0 1 N N N 17.950 -0.969 54.526 0.332 6.000 0.364 H23 N6I 57 N6I H24 H24 H 0 1 N N N 14.270 1.545 51.149 1.097 0.440 -0.401 H24 N6I 58 N6I H25 H25 H 0 1 N N N 14.043 0.882 55.924 -2.766 2.730 0.587 H25 N6I 59 N6I H27 H27 H 0 1 N N N 13.945 1.401 47.235 3.228 -0.623 -2.630 H27 N6I 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N6I O10 C09 SING N N 1 N6I C12 C13 DOUB Y N 2 N6I C12 C11 SING Y N 3 N6I C09 C11 SING N N 4 N6I C09 C08 SING N N 5 N6I C13 C14 SING Y N 6 N6I C11 C17 DOUB Y N 7 N6I C08 N07 SING N N 8 N6I C14 C15 DOUB Y N 9 N6I C17 C15 SING Y N 10 N6I C15 CL16 SING N N 11 N6I N07 C06 SING N N 12 N6I C05 C06 SING N N 13 N6I C05 C04 DOUB N N 14 N6I C06 C18 DOUB N N 15 N6I C32 C31 SING N N 16 N6I C04 N03 SING N N 17 N6I N34 C19 DOUB Y N 18 N6I N34 C33 SING Y N 19 N6I C18 C19 SING N N 20 N6I C18 C02 SING N N 21 N6I C31 C33 DOUB Y N 22 N6I C31 C30 SING Y N 23 N6I C19 N20 SING Y N 24 N6I N03 C02 SING N N 25 N6I C33 C21 SING Y N 26 N6I C02 O01 DOUB N N 27 N6I C30 C23 DOUB Y N 28 N6I N20 C21 SING Y N 29 N6I C21 C22 DOUB Y N 30 N6I C23 C22 SING Y N 31 N6I C23 N24 SING N N 32 N6I N24 C29 SING N N 33 N6I N24 C25 SING N N 34 N6I C29 C28 SING N N 35 N6I C25 C26 SING N N 36 N6I C28 O27 SING N N 37 N6I C26 O27 SING N N 38 N6I C12 H1 SING N N 39 N6I C13 H2 SING N N 40 N6I C14 H3 SING N N 41 N6I C17 H4 SING N N 42 N6I C22 H5 SING N N 43 N6I C25 H6 SING N N 44 N6I C25 H7 SING N N 45 N6I C26 H8 SING N N 46 N6I C26 H9 SING N N 47 N6I C28 H10 SING N N 48 N6I C28 H11 SING N N 49 N6I C29 H12 SING N N 50 N6I C29 H13 SING N N 51 N6I C04 H14 SING N N 52 N6I C05 H15 SING N N 53 N6I C08 H16 SING N N 54 N6I C08 H17 SING N N 55 N6I C09 H18 SING N N 56 N6I C30 H19 SING N N 57 N6I C32 H20 SING N N 58 N6I C32 H21 SING N N 59 N6I C32 H22 SING N N 60 N6I N03 H23 SING N N 61 N6I N07 H24 SING N N 62 N6I N20 H25 SING N N 63 N6I O10 H27 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N6I SMILES ACDLabs 12.01 "Clc1cccc(c1)C(O)CNC=1C=CNC(=O)C=1c1nc2c(cc(cc2C)N2CCOCC2)[NH]1" N6I InChI InChI 1.03 "InChI=1S/C25H26ClN5O3/c1-15-11-18(31-7-9-34-10-8-31)13-20-23(15)30-24(29-20)22-19(5-6-27-25(22)33)28-14-21(32)16-3-2-4-17(26)12-16/h2-6,11-13,21,32H,7-10,14H2,1H3,(H,29,30)(H2,27,28,33)/t21-/m1/s1" N6I InChIKey InChI 1.03 ZWVZORIKUNOTCS-OAQYLSRUSA-N N6I SMILES_CANONICAL CACTVS 3.385 "Cc1cc(cc2[nH]c(nc12)C3=C(NC[C@@H](O)c4cccc(Cl)c4)C=CNC3=O)N5CCOCC5" N6I SMILES CACTVS 3.385 "Cc1cc(cc2[nH]c(nc12)C3=C(NC[CH](O)c4cccc(Cl)c4)C=CNC3=O)N5CCOCC5" N6I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc2c1nc([nH]2)C3=C(C=CNC3=O)NC[C@H](c4cccc(c4)Cl)O)N5CCOCC5" N6I SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc2c1nc([nH]2)C3=C(C=CNC3=O)NCC(c4cccc(c4)Cl)O)N5CCOCC5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N6I "SYSTEMATIC NAME" ACDLabs 12.01 "(3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one" N6I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[(2~{S})-2-(3-chlorophenyl)-2-oxidanyl-ethyl]amino]-3-(4-methyl-6-morpholin-4-yl-1~{H}-benzimidazol-2-yl)-1~{H}-pyridin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N6I "Create component" 2022-03-24 RCSB N6I "Initial release" 2023-04-05 RCSB #