data_N6P # _chem_comp.id N6P _chem_comp.name "6-(naphthalen-2-yl)-9-(5-O-phosphono-beta-D-ribofuranosyl)-9H-purine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H19 N4 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "6-Naphthylpurine riboside 5'-monophosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-03-21 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 458.361 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N6P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4P5D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N6P C1 C60 C 0 1 Y N N 50.067 60.098 -9.848 5.381 -0.426 0.174 C1 N6P 1 N6P C2 C69 C 0 1 Y N N 51.361 60.546 -10.084 6.422 0.500 0.347 C2 N6P 2 N6P C3 C68 C 0 1 Y N N 52.380 60.232 -9.182 7.660 0.109 0.886 C3 N6P 3 N6P C4 C67 C 0 1 Y N N 53.668 60.690 -9.421 8.649 1.032 1.040 C4 N6P 4 N6P C5 C66 C 0 1 Y N N 53.960 61.447 -10.553 8.452 2.361 0.672 C5 N6P 5 N6P C6 C65 C 0 1 Y N N 52.939 61.761 -11.447 7.266 2.776 0.146 C6 N6P 6 N6P C7 C64 C 0 1 Y N N 51.643 61.307 -11.207 6.222 1.852 -0.029 C7 N6P 7 N6P C8 C63 C 0 1 Y N N 50.625 61.623 -12.100 4.985 2.250 -0.569 C8 N6P 8 N6P C9 C62 C 0 1 Y N N 49.335 61.179 -11.867 3.990 1.339 -0.729 C9 N6P 9 N6P C10 C61 C 0 1 Y N N 49.062 60.376 -10.753 4.179 -0.006 -0.366 C10 N6P 10 N6P C11 C6 C 0 1 Y N N 47.659 59.917 -10.412 3.077 -0.977 -0.551 C11 N6P 11 N6P N1 N1 N 0 1 Y N N 47.484 59.124 -9.333 3.331 -2.238 -0.896 N1 N6P 12 N6P C12 C2 C 0 1 Y N N 46.283 58.731 -8.966 2.355 -3.110 -1.063 C12 N6P 13 N6P N2 N3 N 0 1 Y N N 45.145 59.100 -9.597 1.087 -2.793 -0.901 N2 N6P 14 N6P C13 C4 C 0 1 Y N N 45.229 59.902 -10.704 0.734 -1.561 -0.558 C13 N6P 15 N6P C14 C5 C 0 1 Y N N 46.502 60.339 -11.148 1.738 -0.592 -0.362 C14 N6P 16 N6P N3 N7 N 0 1 Y N N 46.294 61.126 -12.250 1.117 0.561 -0.023 N3 N6P 17 N6P C15 C8 C 0 1 Y N N 44.953 61.176 -12.470 -0.171 0.370 0.000 C15 N6P 18 N6P N4 N9 N 0 1 Y N N 44.311 60.441 -11.560 -0.457 -0.924 -0.318 N4 N6P 19 N6P C16 "C1'" C 0 1 N N R 42.941 60.287 -11.431 -1.792 -1.523 -0.397 C16 N6P 20 N6P O1 "O4'" O 0 1 N N N 42.309 61.215 -12.574 -2.801 -0.499 -0.531 O1 N6P 21 N6P C17 "C2'" C 0 1 N N R 42.572 60.878 -10.268 -2.158 -2.218 0.939 C17 N6P 22 N6P O2 "O2'" O 0 1 N N N 41.578 60.100 -9.490 -1.666 -3.559 0.967 O2 N6P 23 N6P C18 "C3'" C 0 1 N N S 41.939 62.276 -10.548 -3.705 -2.198 0.902 C18 N6P 24 N6P O3 "O3'" O 0 1 N N N 40.677 62.432 -10.089 -4.211 -3.452 0.438 O3 N6P 25 N6P C19 "C4'" C 0 1 N N R 41.869 62.375 -12.092 -4.044 -1.076 -0.099 C19 N6P 26 N6P C20 "C5'" C 0 1 N N N 42.732 63.559 -12.512 -4.903 -0.010 0.586 C20 N6P 27 N6P O4 "O5'" O 0 1 N N N 42.788 63.548 -13.946 -5.295 0.973 -0.374 O4 N6P 28 N6P P1 P P 0 1 N N N 43.842 64.465 -14.697 -6.208 2.246 -0.001 P1 N6P 29 N6P O5 O2 O 0 1 N N N 45.235 64.109 -14.331 -7.671 1.744 0.448 O5 N6P 30 N6P O6 O3 O 0 1 N N N 43.617 64.231 -16.172 -5.581 2.995 1.110 O6 N6P 31 N6P O7 O1 O 0 1 N N N 43.549 65.897 -14.347 -6.342 3.205 -1.287 O7 N6P 32 N6P H1 H1 H 0 1 N N N 49.847 59.531 -8.955 5.520 -1.460 0.456 H1 N6P 33 N6P H2 H2 H 0 1 N N N 52.167 59.638 -8.306 7.826 -0.918 1.177 H2 N6P 34 N6P H3 H3 H 0 1 N N N 54.455 60.456 -8.719 9.599 0.730 1.455 H3 N6P 35 N6P H4 H4 H 0 1 N N N 54.969 61.787 -10.736 9.252 3.074 0.805 H4 N6P 36 N6P H5 H5 H 0 1 N N N 53.151 62.355 -12.324 7.129 3.809 -0.135 H5 N6P 37 N6P H6 H6 H 0 1 N N N 50.841 62.216 -12.977 4.825 3.280 -0.852 H6 N6P 38 N6P H7 H7 H 0 1 N N N 48.539 61.452 -12.544 3.043 1.652 -1.143 H7 N6P 39 N6P H8 H8 H 0 1 N N N 46.201 58.076 -8.111 2.606 -4.122 -1.343 H8 N6P 40 N6P H9 H9 H 0 1 N N N 44.477 61.730 -13.265 -0.905 1.125 0.240 H9 N6P 41 N6P H10 H10 H 0 1 N N N 42.596 59.248 -11.543 -1.846 -2.229 -1.225 H10 N6P 42 N6P H11 H11 H 0 1 N N N 43.455 61.041 -9.632 -1.781 -1.650 1.790 H11 N6P 43 N6P H12 H12 H 0 1 N N N 41.364 60.568 -8.691 -1.870 -4.036 1.783 H12 N6P 44 N6P H13 H13 H 0 1 N N N 42.615 63.056 -10.168 -4.108 -1.967 1.888 H13 N6P 45 N6P H14 H14 H 0 1 N N N 40.676 62.378 -9.141 -3.976 -4.202 1.000 H14 N6P 46 N6P H15 H15 H 0 1 N N N 40.827 62.571 -12.385 -4.578 -1.491 -0.954 H15 N6P 47 N6P H16 H16 H 0 1 N N N 43.744 63.456 -12.093 -5.791 -0.478 1.011 H16 N6P 48 N6P H17 H17 H 0 1 N N N 42.282 64.499 -12.158 -4.327 0.465 1.379 H17 N6P 49 N6P H18 H18 H 0 1 N N N 45.698 63.807 -15.103 -8.142 1.244 -0.233 H18 N6P 50 N6P H19 H19 H 0 1 N N N 43.281 66.366 -15.128 -6.880 3.994 -1.135 H19 N6P 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N6P O6 P1 DOUB N N 1 N6P P1 O7 SING N N 2 N6P P1 O5 SING N N 3 N6P P1 O4 SING N N 4 N6P O4 C20 SING N N 5 N6P O1 C19 SING N N 6 N6P O1 C16 SING N N 7 N6P C20 C19 SING N N 8 N6P C15 N3 DOUB Y N 9 N6P C15 N4 SING Y N 10 N6P N3 C14 SING Y N 11 N6P C8 C9 DOUB Y N 12 N6P C8 C7 SING Y N 13 N6P C19 C18 SING N N 14 N6P C9 C10 SING Y N 15 N6P N4 C16 SING N N 16 N6P N4 C13 SING Y N 17 N6P C6 C7 DOUB Y N 18 N6P C6 C5 SING Y N 19 N6P C16 C17 SING N N 20 N6P C7 C2 SING Y N 21 N6P C14 C13 DOUB Y N 22 N6P C14 C11 SING Y N 23 N6P C10 C11 SING N N 24 N6P C10 C1 DOUB Y N 25 N6P C13 N2 SING Y N 26 N6P C5 C4 DOUB Y N 27 N6P C18 C17 SING N N 28 N6P C18 O3 SING N N 29 N6P C11 N1 DOUB Y N 30 N6P C17 O2 SING N N 31 N6P C2 C1 SING Y N 32 N6P C2 C3 DOUB Y N 33 N6P N2 C12 DOUB Y N 34 N6P C4 C3 SING Y N 35 N6P N1 C12 SING Y N 36 N6P C1 H1 SING N N 37 N6P C3 H2 SING N N 38 N6P C4 H3 SING N N 39 N6P C5 H4 SING N N 40 N6P C6 H5 SING N N 41 N6P C8 H6 SING N N 42 N6P C9 H7 SING N N 43 N6P C12 H8 SING N N 44 N6P C15 H9 SING N N 45 N6P C16 H10 SING N N 46 N6P C17 H11 SING N N 47 N6P O2 H12 SING N N 48 N6P C18 H13 SING N N 49 N6P O3 H14 SING N N 50 N6P C19 H15 SING N N 51 N6P C20 H16 SING N N 52 N6P C20 H17 SING N N 53 N6P O5 H18 SING N N 54 N6P O7 H19 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N6P SMILES ACDLabs 12.01 "O=P(O)(O)OCC5OC(n2cnc1c(ncnc12)c4cc3ccccc3cc4)C(O)C5O" N6P InChI InChI 1.03 "InChI=1S/C20H19N4O7P/c25-17-14(8-30-32(27,28)29)31-20(18(17)26)24-10-23-16-15(21-9-22-19(16)24)13-6-5-11-3-1-2-4-12(11)7-13/h1-7,9-10,14,17-18,20,25-26H,8H2,(H2,27,28,29)/t14-,17-,18-,20-/m1/s1" N6P InChIKey InChI 1.03 LQGRESLLVHYRLI-VXXKDZQQSA-N N6P SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c2ncnc3c4ccc5ccccc5c4" N6P SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c2ncnc3c4ccc5ccccc5c4" N6P SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc2cc(ccc2c1)c3c4c(ncn3)n(cn4)[C@H]5[C@@H]([C@@H]([C@H](O5)COP(=O)(O)O)O)O" N6P SMILES "OpenEye OEToolkits" 1.9.2 "c1ccc2cc(ccc2c1)c3c4c(ncn3)n(cn4)C5C(C(C(O5)COP(=O)(O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N6P "SYSTEMATIC NAME" ACDLabs 12.01 "6-(naphthalen-2-yl)-9-(5-O-phosphono-beta-D-ribofuranosyl)-9H-purine" N6P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2R,3S,4R,5R)-5-(6-naphthalen-2-ylpurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N6P "Create component" 2014-03-21 RCSB N6P "Initial release" 2014-08-20 RCSB N6P "Modify descriptor" 2014-09-05 RCSB N6P "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id N6P _pdbx_chem_comp_synonyms.name "6-Naphthylpurine riboside 5'-monophosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##