2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]methyl}phosphoryl]-3,4-dihydrothymidine
non-polymer
HETAIN
C11 H20 N3 O12 P3
0
2014-11-13
2015-06-26
N
REL
479.211
N6T
N
Corina
N
4RT2
RCSB
O4
O
0
1
N
N
N
10.837
7.640
10.877
-7.279
-3.222
0.971
O4
N6T
1
C4
C
0
1
N
N
N
9.432
7.627
10.697
-6.593
-2.314
0.538
C4
N6T
2
C5
C
0
1
N
N
N
8.621
7.197
11.769
-6.607
-2.003
-0.843
C5
N6T
3
C7
C
0
1
N
N
N
9.208
6.765
13.062
-7.470
-2.792
-1.794
C7
N6T
4
C6
C
0
1
N
N
N
7.238
7.185
11.553
-5.838
-0.991
-1.297
C6
N6T
5
N3
N
0
1
N
N
N
8.872
8.013
9.518
-5.817
-1.591
1.371
N3
N6T
6
C2
C
0
1
N
N
N
7.577
7.979
9.386
-5.060
-0.587
0.891
C2
N6T
7
O2
O
0
1
N
N
N
7.117
8.312
8.335
-4.365
0.057
1.654
O2
N6T
8
N1
N
0
1
N
N
N
6.738
7.586
10.377
-5.060
-0.285
-0.420
N1
N6T
9
C1'
C
0
1
N
N
R
5.304
7.539
10.166
-4.225
0.813
-0.912
C1'
N6T
10
C2'
C
0
1
N
N
N
4.993
6.090
9.666
-4.659
2.149
-0.269
C2'
N6T
11
C3'
C
0
1
N
N
S
4.488
5.377
10.929
-3.332
2.907
-0.045
C3'
N6T
12
O3'
O
0
1
N
N
N
3.660
4.205
10.520
-3.321
4.128
-0.787
O3'
N6T
13
O4'
O
0
1
N
N
N
4.605
7.671
11.267
-2.855
0.630
-0.493
O4'
N6T
14
C4'
C
0
1
N
N
R
3.771
6.315
11.534
-2.252
1.939
-0.579
C4'
N6T
15
C5'
C
0
1
N
N
N
3.635
6.065
13.021
-0.998
2.007
0.293
C5'
N6T
16
O5'
O
0
1
N
N
N
4.910
6.112
13.593
0.028
1.195
-0.283
O5'
N6T
17
PA
P
0
1
N
N
N
5.277
5.176
14.877
1.489
1.031
0.373
PA
N6T
18
O1A
O
0
1
N
N
N
4.163
5.214
15.900
1.358
0.289
1.796
O1A
N6T
19
O2A
O
0
1
N
N
N
6.637
5.647
15.485
2.095
2.367
0.567
O2A
N6T
20
C3A
C
0
1
N
N
N
5.534
3.433
14.292
2.544
0.040
-0.734
C3A
N6T
21
PB
P
0
1
N
N
N
4.040
2.524
13.802
4.199
-0.146
0.008
PB
N6T
22
O1B
O
0
1
N
N
N
4.099
2.316
12.245
4.079
-0.827
1.316
O1B
N6T
23
O2B
O
0
1
N
N
N
2.806
3.223
14.208
4.858
1.308
0.219
O2B
N6T
24
N3B
N
0
1
N
N
N
4.123
1.053
14.594
5.173
-1.061
-1.014
N3B
N6T
25
PG
P
0
1
N
N
N
4.012
0.992
16.245
6.713
-1.256
-0.364
PG
N6T
26
O2G
O
0
1
N
N
N
2.913
0.023
16.596
6.614
-1.947
0.941
O2G
N6T
27
O1G
O
0
1
N
N
N
5.238
0.513
16.817
7.613
-2.135
-1.370
O1G
N6T
28
O3G
O
0
1
N
N
N
3.716
2.405
16.772
7.395
0.187
-0.156
O3G
N6T
29
H1
H
0
1
N
N
N
8.402
6.473
13.752
-8.013
-3.559
-1.241
H1
N6T
30
H2
H
0
1
N
N
N
9.875
5.907
12.893
-8.181
-2.123
-2.279
H2
N6T
31
H3
H
0
1
N
N
N
9.782
7.595
13.500
-6.842
-3.264
-2.549
H3
N6T
32
H4
H
0
1
N
N
N
6.573
6.852
12.336
-5.835
-0.740
-2.347
H4
N6T
33
H5
H
0
1
N
N
N
9.449
8.320
8.761
-5.805
-1.795
2.319
H5
N6T
34
H6
H
0
1
N
N
N
5.007
8.256
9.386
-4.284
0.876
-1.998
H6
N6T
35
H7
H
0
1
N
N
N
4.219
6.101
8.884
-5.308
2.705
-0.946
H7
N6T
36
H8
H
0
1
N
N
N
5.900
5.605
9.277
-5.162
1.969
0.682
H8
N6T
37
H9
H
0
1
N
N
N
5.346
5.043
11.531
-3.178
3.102
1.016
H9
N6T
38
H10
H
0
1
N
N
N
3.796
3.491
11.132
-4.018
4.749
-0.533
H10
N6T
39
H11
H
0
1
N
N
N
2.772
6.432
11.088
-2.009
2.177
-1.615
H11
N6T
40
H12
H
0
1
N
N
N
2.997
6.839
13.471
-0.652
3.039
0.354
H12
N6T
41
H13
H
0
1
N
N
N
3.187
5.075
13.192
-1.231
1.643
1.294
H13
N6T
42
H14
H
0
1
N
N
N
4.506
5.522
16.731
0.968
-0.594
1.745
H14
N6T
43
H15
H
0
1
N
N
N
6.016
2.873
15.107
2.098
-0.944
-0.877
H15
N6T
44
H16
H
0
1
N
N
N
6.207
3.466
13.423
2.633
0.542
-1.698
H16
N6T
45
H17
H
0
1
N
N
N
2.282
3.413
13.439
4.968
1.813
-0.598
H17
N6T
46
H18
H
0
1
N
N
N
3.380
0.489
14.234
4.749
-1.954
-1.214
H18
N6T
47
H19
H
0
1
N
N
N
5.075
-0.299
17.282
8.515
-2.288
-1.058
H19
N6T
48
H20
H
0
1
N
N
N
2.883
2.405
17.228
7.493
0.697
-0.972
H20
N6T
49
doub
N
N
1
sing
N
N
2
sing
N
N
3
sing
N
N
4
sing
N
N
5
sing
N
N
6
sing
N
N
7
sing
N
N
8
sing
N
N
9
sing
N
N
10
doub
N
N
11
sing
N
N
12
sing
N
N
13
sing
N
N
14
sing
N
N
15
doub
N
N
16
sing
N
N
17
doub
N
N
18
sing
N
N
19
sing
N
N
20
sing
N
N
21
sing
N
N
22
sing
N
N
23
sing
N
N
24
sing
N
N
25
doub
N
N
26
sing
N
N
27
doub
N
N
28
sing
N
N
29
sing
N
N
30
sing
N
N
31
sing
N
N
32
sing
N
N
33
sing
N
N
34
sing
N
N
35
sing
N
N
36
sing
N
N
37
sing
N
N
38
sing
N
N
39
sing
N
N
40
sing
N
N
41
sing
N
N
42
sing
N
N
43
sing
N
N
44
sing
N
N
45
sing
N
N
46
sing
N
N
47
sing
N
N
48
sing
N
N
49
sing
N
N
50
O=P(O)(O)NP(=O)(O)CP(=O)(O)OCC2OC(N1C(=O)NC(=O)C(=C1)C)CC2O
InChI=1S/C11H20N3O12P3/c1-6-3-14(11(17)12-10(6)16)9-2-7(15)8(26-9)4-25-28(20,21)5-27(18,19)13-29(22,23)24/h3,7-9,15H,2,4-5H2,1H3,(H,20,21)(H,12,16,17)(H4,13,18,19,22,23,24)/t7-,8+,9+/m0/s1
FTYKINXQGSFHAF-DJLDLDEBSA-N
CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)C[P](O)(=O)N[P](O)(O)=O)O2)C(=O)NC1=O
CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)C[P](O)(=O)N[P](O)(O)=O)O2)C(=O)NC1=O
CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(CP(=O)(NP(=O)(O)O)O)O)O
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(CP(=O)(NP(=O)(O)O)O)O)O
2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]methyl}phosphoryl]-3,4-dihydrothymidine
[[[[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methyl-oxidanyl-phosphoryl]amino]phosphonic acid
RCSB
RCSB