data_N78 # _chem_comp.id N78 _chem_comp.name "~{N}-[5-[4-[[4-[[1,3-bis(oxidanylidene)isoindol-2-yl]methyl]phenyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]-2-(2-hydroxyethyloxy)phenyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H28 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-11-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 576.602 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N78 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6TG0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N78 C4 C1 C 0 1 Y N N N N N -42.434 11.827 -0.883 -2.679 4.314 -1.120 C4 N78 1 N78 C5 C2 C 0 1 Y N N N N N -43.673 11.213 -0.777 -2.243 3.027 -0.762 C5 N78 2 N78 C6 C3 C 0 1 Y N N N N N -43.684 9.832 -0.760 -0.984 2.884 -0.161 C6 N78 3 N78 N1 N1 N 0 1 Y N N N N N -42.553 9.102 -0.816 -0.255 3.978 0.044 N1 N78 4 N78 N3 N2 N 0 1 Y N N N N N -41.285 11.101 -0.941 -1.877 5.349 -0.874 N3 N78 5 N78 C2 C4 C 0 1 Y N N N N N -41.335 9.745 -0.896 -0.703 5.169 -0.308 C2 N78 6 N78 CAK C5 C 0 1 Y N N N N N -43.914 13.415 -0.814 -4.299 2.868 -1.695 CAK N78 7 N78 CAL C6 C 0 1 Y N N N N N -44.589 12.245 -0.758 -3.320 2.107 -1.149 CAL N78 8 N78 CAM C7 C 0 1 Y N N N N N -45.977 12.285 -0.619 -3.333 0.634 -0.977 CAM N78 9 N78 CAN C8 C 0 1 Y N N N N N -44.916 7.742 -0.614 0.797 1.496 0.680 CAN N78 10 N78 CAO C9 C 0 1 Y N N N N N -45.792 6.991 -1.424 1.117 0.461 1.548 CAO N78 11 N78 CAP C10 C 0 1 Y N N N N N -45.899 5.595 -1.286 2.412 0.321 2.006 CAP N78 12 N78 CAQ C11 C 0 1 Y N N N N N -45.133 4.914 -0.316 3.390 1.212 1.602 CAQ N78 13 N78 CAR C12 C 0 1 Y N N N N N -44.294 5.665 0.517 3.074 2.244 0.738 CAR N78 14 N78 CAS C13 C 0 1 Y N N N N N -44.191 7.066 0.385 1.781 2.388 0.275 CAS N78 15 N78 CAT C14 C 0 1 Y N N N N N -46.804 13.074 -1.448 -4.432 0.010 -0.390 CAT N78 16 N78 CAU C15 C 0 1 Y N N N N N -48.193 13.084 -1.267 -4.441 -1.366 -0.232 CAU N78 17 N78 CAV C16 C 0 1 Y N N N N N -48.795 12.351 -0.226 -3.351 -2.122 -0.660 CAV N78 18 N78 CAW C17 C 0 1 Y N N N N N -48.020 11.601 0.648 -2.259 -1.500 -1.243 CAW N78 19 N78 CAX C18 C 0 1 Y N N N N N -46.628 11.572 0.434 -2.249 -0.129 -1.408 CAX N78 20 N78 CAY C19 C 0 1 N N N N N N -45.233 3.496 -0.152 4.802 1.057 2.104 CAY N78 21 N78 CAZ C20 C 0 1 N N N N N N -43.173 2.357 -1.016 5.645 -1.143 1.307 CAZ N78 22 N78 CBA C21 C 0 1 Y N N N N N -42.725 1.735 -2.134 6.484 -1.656 0.203 CBA N78 23 N78 CBB C22 C 0 1 Y N N N N N -43.753 1.752 -3.005 6.869 -0.526 -0.547 CBB N78 24 N78 CBC C23 C 0 1 N N N N N N -44.774 2.389 -2.404 6.251 0.635 0.127 CBC N78 25 N78 CBD C24 C 0 1 Y N N N N N -41.557 1.175 -2.478 6.911 -2.917 -0.182 CBD N78 26 N78 CBE C25 C 0 1 Y N N N N N -41.379 0.599 -3.733 7.715 -3.058 -1.303 CBE N78 27 N78 CBF C26 C 0 1 Y N N N N N -42.440 0.615 -4.631 8.093 -1.949 -2.038 CBF N78 28 N78 CBG C27 C 0 1 Y N N N N N -43.623 1.212 -4.225 7.676 -0.682 -1.662 CBG N78 29 N78 CBH C28 C 0 1 N N N N N N -50.822 11.176 -0.059 -2.209 -4.186 -0.965 CBH N78 30 N78 CBI C29 C 0 1 N N N N N N -52.329 11.433 -0.097 -2.400 -5.682 -0.708 CBI N78 31 N78 CBJ C30 C 0 1 N N N N N N -49.550 13.162 -3.163 -6.348 -1.308 1.192 CBJ N78 32 N78 CBK C31 C 0 1 N N N N N N -50.493 13.984 -4.093 -7.600 -1.950 1.733 CBK N78 33 N78 CBL C32 C 0 1 N N N N N N -50.090 13.805 -5.563 -8.326 -0.961 2.647 CBL N78 34 N78 NAC N3 N 0 1 Y N N N N N -42.583 13.140 -0.901 -3.924 4.184 -1.675 NAC N78 35 N78 NAD N4 N 0 1 N N N N N N -44.863 9.117 -0.727 -0.512 1.637 0.210 NAD N78 36 N78 NAE N5 N 0 1 N N N N N N -49.015 13.810 -2.105 -5.544 -1.997 0.359 NAE N78 37 N78 NAF N6 N 0 1 N N N N N N -44.436 2.758 -1.160 5.554 0.194 1.189 NAF N78 38 N78 OBM O1 O 0 1 N N N N N N -50.167 12.449 -0.051 -3.359 -3.473 -0.504 OBM N78 39 N78 OBN O2 O 0 1 N N N N N N -42.528 2.549 0.019 5.122 -1.816 2.171 OBN N78 40 N78 OBO O3 O 0 1 N N N N N N -45.882 2.567 -2.926 6.352 1.794 -0.223 OBO N78 41 N78 OBP O4 O 0 1 N N N N N N -52.605 12.292 -1.214 -3.487 -6.167 -1.498 OBP N78 42 N78 OBQ O5 O 0 1 N N N N N N -49.345 11.981 -3.446 -6.065 -0.171 1.507 OBQ N78 43 N78 H1 H1 H 0 1 N N N N N N -40.421 9.170 -0.923 -0.079 6.032 -0.123 H1 N78 44 N78 H2 H2 H 0 1 N N N N N N -44.355 14.400 -0.793 -5.235 2.494 -2.083 H2 N78 45 N78 H3 H3 H 0 1 N N N N N N -46.393 7.497 -2.165 0.354 -0.235 1.865 H3 N78 46 N78 H4 H4 H 0 1 N N N N N N -46.571 5.042 -1.926 2.662 -0.484 2.682 H4 N78 47 N78 H5 H5 H 0 1 N N N N N N -43.714 5.161 1.276 3.840 2.938 0.424 H5 N78 48 N78 H6 H6 H 0 1 N N N N N N -43.552 7.623 1.054 1.535 3.195 -0.400 H6 N78 49 N78 H7 H7 H 0 1 N N N N N N -46.362 13.675 -2.229 -5.275 0.598 -0.058 H7 N78 50 N78 H8 H8 H 0 1 N N N N N N -48.470 11.057 1.466 -1.416 -2.088 -1.573 H8 N78 51 N78 H9 H9 H 0 1 N N N N N N -46.020 10.979 1.102 -1.398 0.353 -1.867 H9 N78 52 N78 H10 H10 H 0 1 N N N N N N -46.288 3.202 -0.250 5.279 2.035 2.155 H10 N78 53 N78 H11 H11 H 0 1 N N N N N N -44.870 3.229 0.851 4.787 0.608 3.097 H11 N78 54 N78 H12 H12 H 0 1 N N N N N N -40.741 1.170 -1.771 6.620 -3.786 0.389 H12 N78 55 N78 H13 H13 H 0 1 N N N N N N -40.435 0.149 -4.003 8.048 -4.040 -1.604 H13 N78 56 N78 H14 H14 H 0 1 N N N N N N -42.345 0.176 -5.613 8.722 -2.071 -2.907 H14 N78 57 N78 H15 H15 H 0 1 N N N N N N -44.460 1.243 -4.907 7.974 0.180 -2.240 H15 N78 58 N78 H16 H16 H 0 1 N N N N N N -50.560 10.613 0.849 -1.326 -3.836 -0.432 H16 N78 59 N78 H17 H17 H 0 1 N N N N N N -50.517 10.602 -0.947 -2.080 -4.015 -2.034 H17 N78 60 N78 H18 H18 H 0 1 N N N N N N -52.648 11.920 0.836 -1.489 -6.216 -0.977 H18 N78 61 N78 H19 H19 H 0 1 N N N N N N -52.867 10.481 -0.216 -2.618 -5.845 0.348 H19 N78 62 N78 H20 H20 H 0 1 N N N N N N -50.425 15.049 -3.826 -8.253 -2.227 0.905 H20 N78 63 N78 H21 H21 H 0 1 N N N N N N -51.528 13.637 -3.957 -7.335 -2.842 2.301 H21 N78 64 N78 H22 H22 H 0 1 N N N N N N -50.766 14.391 -6.203 -9.231 -1.425 3.038 H22 N78 65 N78 H23 H23 H 0 1 N N N N N N -49.056 14.154 -5.705 -7.673 -0.684 3.474 H23 N78 66 N78 H24 H24 H 0 1 N N N N N N -50.159 12.741 -5.835 -8.591 -0.069 2.079 H24 N78 67 N78 H25 H25 H 0 1 N N N N N N -41.847 13.814 -0.967 -4.460 4.919 -2.011 H25 N78 68 N78 H26 H26 H 0 1 N N N N N N -45.725 9.621 -0.788 -1.090 0.860 0.143 H26 N78 69 N78 H27 H27 H 0 1 N N N N N N -49.207 14.777 -1.936 -5.728 -2.930 0.168 H27 N78 70 N78 H28 H28 H 0 1 N N N N N N -53.538 12.466 -1.258 -3.666 -7.111 -1.385 H28 N78 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N78 CBL CBK SING N N 1 N78 CBF CBG DOUB Y N 2 N78 CBF CBE SING Y N 3 N78 CBG CBB SING Y N 4 N78 CBK CBJ SING N N 5 N78 CBE CBD DOUB Y N 6 N78 OBQ CBJ DOUB N N 7 N78 CBJ NAE SING N N 8 N78 CBB CBC SING N N 9 N78 CBB CBA DOUB Y N 10 N78 OBO CBC DOUB N N 11 N78 CBD CBA SING Y N 12 N78 CBC NAF SING N N 13 N78 CBA CAZ SING N N 14 N78 NAE CAU SING N N 15 N78 CAT CAU DOUB Y N 16 N78 CAT CAM SING Y N 17 N78 CAO CAP DOUB Y N 18 N78 CAO CAN SING Y N 19 N78 CAP CAQ SING Y N 20 N78 CAU CAV SING Y N 21 N78 OBP CBI SING N N 22 N78 NAF CAZ SING N N 23 N78 NAF CAY SING N N 24 N78 CAZ OBN DOUB N N 25 N78 N3 C2 DOUB Y N 26 N78 N3 C4 SING Y N 27 N78 NAC C4 SING Y N 28 N78 NAC CAK SING Y N 29 N78 C2 N1 SING Y N 30 N78 C4 C5 DOUB Y N 31 N78 N1 C6 DOUB Y N 32 N78 CAK CAL DOUB Y N 33 N78 C5 C6 SING Y N 34 N78 C5 CAL SING Y N 35 N78 C6 NAD SING N N 36 N78 CAL CAM SING N N 37 N78 NAD CAN SING N N 38 N78 CAM CAX DOUB Y N 39 N78 CAN CAS DOUB Y N 40 N78 CAQ CAY SING N N 41 N78 CAQ CAR DOUB Y N 42 N78 CAV OBM SING N N 43 N78 CAV CAW DOUB Y N 44 N78 CBI CBH SING N N 45 N78 CBH OBM SING N N 46 N78 CAS CAR SING Y N 47 N78 CAX CAW SING Y N 48 N78 C2 H1 SING N N 49 N78 CAK H2 SING N N 50 N78 CAO H3 SING N N 51 N78 CAP H4 SING N N 52 N78 CAR H5 SING N N 53 N78 CAS H6 SING N N 54 N78 CAT H7 SING N N 55 N78 CAW H8 SING N N 56 N78 CAX H9 SING N N 57 N78 CAY H10 SING N N 58 N78 CAY H11 SING N N 59 N78 CBD H12 SING N N 60 N78 CBE H13 SING N N 61 N78 CBF H14 SING N N 62 N78 CBG H15 SING N N 63 N78 CBH H16 SING N N 64 N78 CBH H17 SING N N 65 N78 CBI H18 SING N N 66 N78 CBI H19 SING N N 67 N78 CBK H20 SING N N 68 N78 CBK H21 SING N N 69 N78 CBL H22 SING N N 70 N78 CBL H23 SING N N 71 N78 CBL H24 SING N N 72 N78 NAC H25 SING N N 73 N78 NAD H26 SING N N 74 N78 NAE H27 SING N N 75 N78 OBP H28 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N78 InChI InChI 1.03 "InChI=1S/C32H28N6O5/c1-2-27(40)37-25-15-20(9-12-26(25)43-14-13-39)24-16-33-29-28(24)30(35-18-34-29)36-21-10-7-19(8-11-21)17-38-31(41)22-5-3-4-6-23(22)32(38)42/h3-12,15-16,18,39H,2,13-14,17H2,1H3,(H,37,40)(H2,33,34,35,36)" N78 InChIKey InChI 1.03 ZTEPVLSNULOZJI-UHFFFAOYSA-N N78 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1cc(ccc1OCCO)c2c[nH]c3ncnc(Nc4ccc(CN5C(=O)c6ccccc6C5=O)cc4)c23" N78 SMILES CACTVS 3.385 "CCC(=O)Nc1cc(ccc1OCCO)c2c[nH]c3ncnc(Nc4ccc(CN5C(=O)c6ccccc6C5=O)cc4)c23" N78 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cc(ccc1OCCO)c2c[nH]c3c2c(ncn3)Nc4ccc(cc4)CN5C(=O)c6ccccc6C5=O" N78 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cc(ccc1OCCO)c2c[nH]c3c2c(ncn3)Nc4ccc(cc4)CN5C(=O)c6ccccc6C5=O" # _pdbx_chem_comp_identifier.comp_id N78 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[5-[4-[[4-[[1,3-bis(oxidanylidene)isoindol-2-yl]methyl]phenyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]-2-(2-hydroxyethyloxy)phenyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N78 "Create component" 2019-11-14 PDBE N78 "Initial release" 2020-09-30 RCSB N78 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id N78 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CBL _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #