data_N7Y # _chem_comp.id N7Y _chem_comp.name "adenosine 3',5'-bis(trihydrogen diphosphate)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 N5 O16 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-05-06 _chem_comp.pdbx_modified_date 2019-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 587.161 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N7Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6OTT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N7Y O3 O1 O 0 1 N N N 57.869 32.330 -28.760 0.018 -4.634 0.491 O3 N7Y 1 N7Y C4 C1 C 0 1 Y N N 55.797 25.640 -31.417 -3.191 2.756 -1.040 C4 N7Y 2 N7Y C5 C2 C 0 1 N N R 57.126 27.788 -31.634 -2.307 0.917 0.445 C5 N7Y 3 N7Y O4 O2 O 0 1 N N N 55.197 31.641 -28.885 2.198 -5.738 -0.140 O4 N7Y 4 N7Y C6 C3 C 0 1 N N R 56.431 28.534 -30.485 -2.443 -0.435 -0.291 C6 N7Y 5 N7Y N1 N1 N 0 1 Y N N 55.263 25.385 -35.795 -7.144 2.720 1.018 N1 N7Y 6 N7Y C7 C4 C 0 1 N N S 57.614 28.834 -29.567 -0.983 -0.899 -0.495 C7 N7Y 7 N7Y C8 C5 C 0 1 N N R 58.484 27.599 -29.737 -0.139 0.227 0.142 C8 N7Y 8 N7Y N2 N2 N 0 1 Y N N 56.426 27.079 -34.540 -5.289 1.412 1.452 N2 N7Y 9 N7Y C9 C6 C 0 1 N N N 58.043 26.397 -28.940 1.134 0.465 -0.674 C9 N7Y 10 N7Y O5 O3 O 0 1 N N N 55.905 33.854 -27.906 1.073 -6.530 1.976 O5 N7Y 11 N7Y O6 O4 O 0 1 N N N 56.317 31.722 -26.628 0.093 -7.108 -0.395 O6 N7Y 12 N7Y N3 N3 N 0 1 Y N N 55.171 24.746 -32.144 -4.295 3.428 -1.190 N3 N7Y 13 N7Y O7 O5 O 0 1 N N N 59.445 30.704 -27.625 -1.399 -3.953 -1.616 O7 N7Y 14 N7Y O8 O6 O 0 1 N N N 58.493 26.529 -27.574 1.955 1.425 -0.007 O8 N7Y 15 N7Y N4 N4 N 0 1 Y N N 56.364 26.651 -32.149 -3.328 1.857 -0.024 N4 N7Y 16 N7Y N N5 N 0 1 N N N 54.196 23.585 -34.834 -7.184 4.352 -0.685 N N7Y 17 N7Y C C7 C 0 1 Y N N 54.918 24.694 -34.687 -6.532 3.361 0.027 C N7Y 18 N7Y O O7 O 0 1 N N N 55.841 29.741 -30.957 -3.159 -1.373 0.514 O N7Y 19 N7Y C1 C8 C 0 1 Y N N 55.976 26.505 -35.658 -6.529 1.774 1.704 C1 N7Y 20 N7Y C2 C9 C 0 1 Y N N 56.075 26.374 -33.459 -4.597 1.996 0.480 C2 N7Y 21 N7Y C3 C10 C 0 1 Y N N 55.339 25.197 -33.445 -5.207 3.009 -0.279 C3 N7Y 22 N7Y O1 O8 O 0 1 N N N 58.323 30.041 -29.921 -0.754 -2.140 0.176 O1 N7Y 23 N7Y O10 O9 O 0 1 N N N 60.962 26.975 -25.338 6.549 2.387 0.365 O10 N7Y 24 N7Y O11 O10 O 0 1 N N N 59.995 26.982 -23.010 5.779 3.962 2.181 O11 N7Y 25 N7Y O12 O11 O 0 1 N N N 59.742 29.011 -24.487 5.809 4.694 -0.344 O12 N7Y 26 N7Y O13 O12 O 0 1 N N N 57.052 28.251 -26.461 4.243 0.742 -0.824 O13 N7Y 27 N7Y O14 O13 O 0 1 N N N 56.408 25.788 -26.391 3.148 2.707 -1.968 O14 N7Y 28 N7Y O15 O14 O 0 1 N N N 58.368 27.308 -31.145 -0.988 1.394 0.101 O15 N7Y 29 N7Y O2 O15 O 0 1 N N N 60.112 31.883 -29.786 0.986 -3.178 -1.329 O2 N7Y 30 N7Y O9 O16 O 0 1 N N N 58.410 26.631 -25.118 4.079 2.895 0.483 O9 N7Y 31 N7Y P P1 P 0 1 N N N 59.063 31.277 -28.934 -0.260 -3.470 -0.586 P N7Y 32 N7Y P1 P2 P 0 1 N N N 56.178 32.367 -27.989 0.874 -5.997 0.470 P1 N7Y 33 N7Y P2 P3 P 0 1 N N N 57.461 26.832 -26.392 3.375 1.916 -0.584 P2 N7Y 34 N7Y P3 P4 P 0 1 N N N 59.875 27.505 -24.427 5.575 3.461 0.665 P3 N7Y 35 N7Y H7 H1 H 0 1 N N N 55.860 25.585 -30.340 -2.300 2.887 -1.635 H7 N7Y 36 N7Y H H2 H 0 1 N N N 57.301 28.504 -32.451 -2.389 0.772 1.522 H N7Y 37 N7Y H1 H3 H 0 1 N N N 55.703 27.881 -29.982 -2.938 -0.298 -1.252 H1 N7Y 38 N7Y H2 H4 H 0 1 N N N 57.260 28.889 -28.527 -0.757 -0.992 -1.557 H2 N7Y 39 N7Y H3 H5 H 0 1 N N N 59.524 27.848 -29.481 0.114 -0.024 1.172 H3 N7Y 40 N7Y H9 H6 H 0 1 N N N 56.945 26.328 -28.959 1.681 -0.473 -0.776 H9 N7Y 41 N7Y H10 H7 H 0 1 N N N 58.475 25.487 -29.381 0.867 0.839 -1.662 H10 N7Y 42 N7Y H11 H8 H 0 1 N N N 55.151 34.068 -28.443 1.582 -7.350 2.039 H11 N7Y 43 N7Y H12 H9 H 0 1 N N N 55.751 30.960 -26.579 -0.784 -7.328 -0.052 H12 N7Y 44 N7Y H13 H10 H 0 1 N N N 60.380 30.808 -27.494 -2.245 -4.162 -1.198 H13 N7Y 45 N7Y H5 H11 H 0 1 N N N 54.013 23.432 -35.805 -8.099 4.586 -0.464 H5 N7Y 46 N7Y H4 H12 H 0 1 N N N 54.702 22.806 -34.463 -6.727 4.811 -1.406 H4 N7Y 47 N7Y H8 H13 H 0 1 N N N 55.658 30.313 -30.221 -4.063 -1.102 0.724 H8 N7Y 48 N7Y H6 H14 H 0 1 N N N 56.222 27.016 -36.577 -7.064 1.280 2.502 H6 N7Y 49 N7Y H14 H15 H 0 1 N N N 60.746 26.404 -22.948 6.660 4.316 2.363 H14 N7Y 50 N7Y H15 H16 H 0 1 N N N 60.378 29.361 -25.099 5.205 5.436 -0.204 H15 N7Y 51 N7Y H16 H17 H 0 1 N N N 55.553 26.200 -26.438 2.586 3.490 -1.886 H16 N7Y 52 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N7Y N1 C1 DOUB Y N 1 N7Y N1 C SING Y N 2 N7Y C1 N2 SING Y N 3 N7Y N C SING N N 4 N7Y C C3 DOUB Y N 5 N7Y N2 C2 DOUB Y N 6 N7Y C2 C3 SING Y N 7 N7Y C2 N4 SING Y N 8 N7Y C3 N3 SING Y N 9 N7Y N4 C5 SING N N 10 N7Y N4 C4 SING Y N 11 N7Y N3 C4 DOUB Y N 12 N7Y C5 O15 SING N N 13 N7Y C5 C6 SING N N 14 N7Y O15 C8 SING N N 15 N7Y O C6 SING N N 16 N7Y C6 C7 SING N N 17 N7Y O1 C7 SING N N 18 N7Y O1 P SING N N 19 N7Y O2 P DOUB N N 20 N7Y C8 C7 SING N N 21 N7Y C8 C9 SING N N 22 N7Y C9 O8 SING N N 23 N7Y P O3 SING N N 24 N7Y P O7 SING N N 25 N7Y O4 P1 DOUB N N 26 N7Y O3 P1 SING N N 27 N7Y P1 O5 SING N N 28 N7Y P1 O6 SING N N 29 N7Y O8 P2 SING N N 30 N7Y O13 P2 DOUB N N 31 N7Y P2 O14 SING N N 32 N7Y P2 O9 SING N N 33 N7Y O10 P3 DOUB N N 34 N7Y O9 P3 SING N N 35 N7Y O12 P3 SING N N 36 N7Y P3 O11 SING N N 37 N7Y C4 H7 SING N N 38 N7Y C5 H SING N N 39 N7Y C6 H1 SING N N 40 N7Y C7 H2 SING N N 41 N7Y C8 H3 SING N N 42 N7Y C9 H9 SING N N 43 N7Y C9 H10 SING N N 44 N7Y O5 H11 SING N N 45 N7Y O6 H12 SING N N 46 N7Y O7 H13 SING N N 47 N7Y N H5 SING N N 48 N7Y N H4 SING N N 49 N7Y O H8 SING N N 50 N7Y C1 H6 SING N N 51 N7Y O11 H14 SING N N 52 N7Y O12 H15 SING N N 53 N7Y O14 H16 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N7Y SMILES ACDLabs 12.01 "O(P(=O)(O)O)P(O)(OC1C(C(OC1COP(=O)(O)OP(=O)(O)O)n2cnc3c(ncnc23)N)O)=O" N7Y InChI InChI 1.03 "InChI=1S/C10H17N5O16P4/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7(29-35(25,26)31-33(20,21)22)4(28-10)1-27-34(23,24)30-32(17,18)19/h2-4,6-7,10,16H,1H2,(H,23,24)(H,25,26)(H2,11,12,13)(H2,17,18,19)(H2,20,21,22)/t4-,6-,7-,10-/m1/s1" N7Y InChIKey InChI 1.03 DWZMGWMGGHNJLF-KQYNXXCUSA-N N7Y SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O[P](O)(=O)O[P](O)(O)=O)[C@H]3O" N7Y SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O[P](O)(=O)O[P](O)(O)=O)[CH]3O" N7Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)O)N" N7Y SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N7Y "SYSTEMATIC NAME" ACDLabs 12.01 "adenosine 3',5'-bis(trihydrogen diphosphate)" N7Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N7Y "Create component" 2019-05-06 RCSB N7Y "Initial release" 2019-11-06 RCSB ##