data_NA9
#
_chem_comp.id NA9
_chem_comp.name "N-(CARBOXYMETHYL)-3-CYCLOHEXYL-D-ALANYL-N-({6-[AMINO(IMINO)METHYL]PYRIDIN-3-YL}METHYL)-N~2~-METHYL-L-ALANINAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H34 N6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;2-((R)-1-(((S)-1-((6-CARBAMIMIDOYLPYRIDIN-3-YL)METHYLAMINO)-1-OXOPROPAN-2-YL)(METHYL)AMINO)-3-CYCLOHEXYL-1-OXOPROPAN-2-
YLAMINO)ACETIC ACID
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-10-27
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 446.543
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NA9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NA9 C1 C1 C 0 1 Y N N 12.416 20.981 22.458 6.803 -4.714 3.262 C1 NA9 1
NA9 C2 C2 C 0 1 Y N N 12.104 22.214 23.093 6.310 -3.995 4.339 C2 NA9 2
NA9 N3 N3 N 0 1 Y N N 12.723 23.348 22.709 6.589 -2.693 4.570 N3 NA9 3
NA9 C4 C4 C 0 1 Y N N 13.645 23.373 21.734 7.401 -2.085 3.677 C4 NA9 4
NA9 C5 C5 C 0 1 Y N N 14.005 22.192 21.061 7.936 -2.721 2.578 C5 NA9 5
NA9 C6 C6 C 0 1 Y N N 13.381 20.977 21.429 7.635 -4.054 2.365 C6 NA9 6
NA9 C7 C7 C 0 1 N N N 15.046 22.225 19.972 8.832 -1.980 1.628 C7 NA9 7
NA9 C8 C8 C 0 1 N N N 11.100 22.273 24.185 5.436 -4.634 5.308 C8 NA9 8
NA9 N9 N9 N 0 1 N N N 10.398 21.189 24.524 5.031 -5.964 5.248 N9 NA9 9
NA9 N10 N10 N 0 1 N N N 10.909 23.419 24.835 4.994 -3.908 6.314 N10 NA9 10
NA9 N11 N11 N 0 1 N N N 16.375 22.122 20.599 8.088 -1.356 0.559 N11 NA9 11
NA9 C12 C12 C 0 1 N N N 17.127 20.988 20.515 7.818 -1.999 -0.641 C12 NA9 12
NA9 C13 C13 C 0 1 N N S 18.471 20.946 21.198 6.978 -1.139 -1.576 C13 NA9 13
NA9 O14 O14 O 0 1 N N N 16.729 20.005 19.914 8.173 -3.143 -0.919 O14 NA9 14
NA9 C15 C15 C 0 1 N N N 19.572 21.373 20.211 5.644 -0.786 -0.937 C15 NA9 15
NA9 C16 C16 C 0 1 N N N 19.705 18.663 21.142 7.845 -1.681 -3.814 C16 NA9 16
NA9 N17 N17 N 0 1 N N N 18.703 19.564 21.763 6.792 -1.876 -2.820 N17 NA9 17
NA9 C18 C18 C 0 1 N N N 17.970 19.141 22.871 5.689 -2.707 -3.046 C18 NA9 18
NA9 C19 C19 C 0 1 N N R 18.162 17.754 23.492 4.685 -2.861 -1.901 C19 NA9 19
NA9 O20 O20 O 0 1 N N N 17.147 19.881 23.370 5.525 -3.334 -4.098 O20 NA9 20
NA9 N21 N21 N 0 1 N N N 16.917 16.981 23.326 4.244 -4.236 -1.901 N21 NA9 21
NA9 C22 C22 C 0 1 N N N 16.328 16.728 22.002 5.361 -5.155 -1.690 C22 NA9 22
NA9 C23 C23 C 0 1 N N N 14.851 16.445 22.154 4.832 -6.556 -1.673 C23 NA9 23
NA9 O24 O24 O 0 1 N N N 14.377 16.207 23.259 5.848 -7.431 -1.457 O24 NA9 24
NA9 O25 O25 O 0 1 N N N 14.127 16.454 21.166 3.668 -6.895 -1.827 O25 NA9 25
NA9 C26 C26 C 0 1 N N N 18.438 17.853 24.998 3.505 -1.903 -2.090 C26 NA9 26
NA9 C27 C27 C 0 1 N N N 19.895 18.094 25.430 2.490 -2.000 -0.952 C27 NA9 27
NA9 C28 C28 C 0 1 N N N 20.961 17.687 24.379 3.161 -1.715 0.398 C28 NA9 28
NA9 C29 C29 C 0 1 N N N 22.379 17.924 24.952 2.155 -1.753 1.547 C29 NA9 29
NA9 C30 C30 C 0 1 N N N 22.564 19.407 25.353 0.984 -0.806 1.301 C30 NA9 30
NA9 C31 C31 C 0 1 N N N 21.497 19.817 26.392 0.312 -1.080 -0.041 C31 NA9 31
NA9 C32 C32 C 0 1 N N N 20.078 19.586 25.814 1.315 -1.041 -1.192 C32 NA9 32
NA9 H1 H1 H 0 1 N N N 11.925 20.067 22.757 6.555 -5.760 3.113 H1 NA9 33
NA9 H4 H4 H 0 1 N N N 14.114 24.308 21.464 7.606 -1.039 3.886 H4 NA9 34
NA9 H6 H6 H 0 1 N N N 13.641 20.056 20.928 8.039 -4.591 1.510 H6 NA9 35
NA9 H71 1H7 H 0 1 N N N 14.970 23.168 19.411 9.388 -1.196 2.154 H71 NA9 36
NA9 H72 2H7 H 0 1 N N N 14.891 21.388 19.275 9.568 -2.653 1.175 H72 NA9 37
NA9 HN91 1HN9 H 0 0 N N N 9.780 21.428 25.273 4.421 -6.365 5.952 HN91 NA9 38
NA9 HN92 2HN9 H 0 0 N N N 10.477 20.287 24.099 5.318 -6.581 4.497 HN92 NA9 39
NA9 HN10 HN10 H 0 0 N N N 11.519 24.112 24.450 5.364 -2.954 6.241 HN10 NA9 40
NA9 HN11 HN11 H 0 0 N N N 16.736 22.907 21.101 7.789 -0.394 0.688 HN11 NA9 41
NA9 H13 H13 H 0 1 N N N 18.497 21.656 22.038 7.529 -0.227 -1.828 H13 NA9 42
NA9 H151 1H15 H 0 0 N N N 19.143 21.475 19.203 5.081 -1.688 -0.669 H151 NA9 43
NA9 H152 2H15 H 0 0 N N N 19.995 22.338 20.528 5.784 -0.200 -0.023 H152 NA9 44
NA9 H153 3H15 H 0 0 N N N 20.366 20.612 20.196 5.025 -0.201 -1.626 H153 NA9 45
NA9 H161 1H16 H 0 0 N N N 19.407 18.440 20.107 7.598 -2.219 -4.733 H161 NA9 46
NA9 H162 2H16 H 0 0 N N N 20.689 19.154 21.142 8.799 -2.056 -3.433 H162 NA9 47
NA9 H163 3H16 H 0 0 N N N 19.762 17.727 21.717 7.954 -0.619 -4.047 H163 NA9 48
NA9 H19 H19 H 0 1 N N N 19.015 17.272 22.991 5.183 -2.717 -0.939 H19 NA9 49
NA9 HN21 HN21 H 0 0 N N N 16.220 17.484 23.837 3.801 -4.460 -2.796 HN21 NA9 50
NA9 H221 1H22 H 0 0 N N N 16.822 15.860 21.540 5.831 -4.927 -0.730 H221 NA9 51
NA9 H222 2H22 H 0 0 N N N 16.468 17.612 21.363 6.078 -5.038 -2.507 H222 NA9 52
NA9 HO24 HO24 H 0 0 N N N 13.443 16.053 23.177 5.533 -8.360 -1.440 HO24 NA9 53
NA9 H261 1H26 H 0 0 N N N 17.846 18.698 25.378 2.989 -2.112 -3.034 H261 NA9 54
NA9 H262 2H26 H 0 0 N N N 18.176 16.865 25.405 3.866 -0.869 -2.160 H262 NA9 55
NA9 H27 H27 H 0 1 N N N 20.067 17.435 26.293 2.104 -3.027 -0.940 H27 NA9 56
NA9 H281 1H28 H 0 0 N N N 20.828 18.294 23.471 3.644 -0.730 0.373 H281 NA9 57
NA9 H282 2H28 H 0 0 N N N 20.841 16.621 24.134 3.951 -2.452 0.584 H282 NA9 58
NA9 H291 1H29 H 0 0 N N N 22.518 17.291 25.841 2.655 -1.485 2.484 H291 NA9 59
NA9 H292 2H29 H 0 0 N N N 23.121 17.670 24.181 1.778 -2.776 1.667 H292 NA9 60
NA9 H301 1H30 H 0 0 N N N 23.565 19.542 25.789 0.251 -0.908 2.109 H301 NA9 61
NA9 H302 2H30 H 0 0 N N N 22.454 20.037 24.458 1.343 0.231 1.324 H302 NA9 62
NA9 H311 1H31 H 0 0 N N N 21.623 19.210 27.301 -0.172 -2.064 -0.012 H311 NA9 63
NA9 H312 2H31 H 0 0 N N N 21.619 20.883 26.634 -0.477 -0.341 -0.216 H312 NA9 64
NA9 H321 1H32 H 0 0 N N N 19.945 20.210 24.918 0.806 -1.304 -2.126 H321 NA9 65
NA9 H322 2H32 H 0 0 N N N 19.331 19.857 26.575 1.690 -0.017 -1.312 H322 NA9 66
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NA9 C1 C6 SING Y N 1
NA9 C1 C2 DOUB Y N 2
NA9 C1 H1 SING N N 3
NA9 C2 N3 SING Y N 4
NA9 C2 C8 SING N N 5
NA9 N3 C4 DOUB Y N 6
NA9 C4 C5 SING Y N 7
NA9 C4 H4 SING N N 8
NA9 C5 C7 SING N N 9
NA9 C5 C6 DOUB Y N 10
NA9 C6 H6 SING N N 11
NA9 C7 N11 SING N N 12
NA9 C7 H71 SING N N 13
NA9 C7 H72 SING N N 14
NA9 C8 N9 SING N N 15
NA9 C8 N10 DOUB N E 16
NA9 N9 HN91 SING N N 17
NA9 N9 HN92 SING N N 18
NA9 N10 HN10 SING N N 19
NA9 N11 C12 SING N N 20
NA9 N11 HN11 SING N N 21
NA9 C12 O14 DOUB N N 22
NA9 C12 C13 SING N N 23
NA9 C13 C15 SING N N 24
NA9 C13 N17 SING N N 25
NA9 C13 H13 SING N N 26
NA9 C15 H151 SING N N 27
NA9 C15 H152 SING N N 28
NA9 C15 H153 SING N N 29
NA9 C16 N17 SING N N 30
NA9 C16 H161 SING N N 31
NA9 C16 H162 SING N N 32
NA9 C16 H163 SING N N 33
NA9 N17 C18 SING N N 34
NA9 C18 O20 DOUB N N 35
NA9 C18 C19 SING N N 36
NA9 C19 N21 SING N N 37
NA9 C19 C26 SING N N 38
NA9 C19 H19 SING N N 39
NA9 N21 C22 SING N N 40
NA9 N21 HN21 SING N N 41
NA9 C22 C23 SING N N 42
NA9 C22 H221 SING N N 43
NA9 C22 H222 SING N N 44
NA9 C23 O25 DOUB N N 45
NA9 C23 O24 SING N N 46
NA9 O24 HO24 SING N N 47
NA9 C26 C27 SING N N 48
NA9 C26 H261 SING N N 49
NA9 C26 H262 SING N N 50
NA9 C27 C28 SING N N 51
NA9 C27 C32 SING N N 52
NA9 C27 H27 SING N N 53
NA9 C28 C29 SING N N 54
NA9 C28 H281 SING N N 55
NA9 C28 H282 SING N N 56
NA9 C29 C30 SING N N 57
NA9 C29 H291 SING N N 58
NA9 C29 H292 SING N N 59
NA9 C30 C31 SING N N 60
NA9 C30 H301 SING N N 61
NA9 C30 H302 SING N N 62
NA9 C31 C32 SING N N 63
NA9 C31 H311 SING N N 64
NA9 C31 H312 SING N N 65
NA9 C32 H321 SING N N 66
NA9 C32 H322 SING N N 67
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NA9 SMILES ACDLabs 10.04 "O=C(O)CNC(C(=O)N(C)C(C(=O)NCc1cnc(C(=[N@H])N)cc1)C)CC2CCCCC2"
NA9 SMILES_CANONICAL CACTVS 3.341 "C[C@H](N(C)C(=O)[C@@H](CC1CCCCC1)NCC(O)=O)C(=O)NCc2ccc(nc2)C(N)=N"
NA9 SMILES CACTVS 3.341 "C[CH](N(C)C(=O)[CH](CC1CCCCC1)NCC(O)=O)C(=O)NCc2ccc(nc2)C(N)=N"
NA9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(\c1ccc(cn1)CNC(=O)[C@H](C)N(C)C(=O)[C@@H](CC2CCCCC2)NCC(=O)O)/N"
NA9 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(c1ccc(cn1)CNC(=O)C(C)N(C)C(=O)C(CC2CCCCC2)NCC(=O)O)N"
NA9 InChI InChI 1.03 "InChI=1S/C22H34N6O4/c1-14(21(31)27-12-16-8-9-17(20(23)24)25-11-16)28(2)22(32)18(26-13-19(29)30)10-15-6-4-3-5-7-15/h8-9,11,14-15,18,26H,3-7,10,12-13H2,1-2H3,(H3,23,24)(H,27,31)(H,29,30)/t14-,18+/m0/s1"
NA9 InChIKey InChI 1.03 XVBUQSSETBYPJB-KBXCAEBGSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NA9 "SYSTEMATIC NAME" ACDLabs 10.04 "N-(carboxymethyl)-3-cyclohexyl-D-alanyl-N-[(6-carbamimidoylpyridin-3-yl)methyl]-N~2~-methyl-L-alaninamide"
NA9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[[(2R)-1-[[(2S)-1-[(6-carbamimidoylpyridin-3-yl)methylamino]-1-oxo-propan-2-yl]-methyl-amino]-3-cyclohexyl-1-oxo-propan-2-yl]amino]ethanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NA9 "Create component" 2006-10-27 RCSB
NA9 "Modify descriptor" 2011-06-04 RCSB
NA9 "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id NA9
_pdbx_chem_comp_synonyms.name "2-((R)-1-(((S)-1-((6-CARBAMIMIDOYLPYRIDIN-3-YL)METHYLAMINO)-1-OXOPROPAN-2-YL)(METHYL)AMINO)-3-CYCLOHEXYL-1-OXOPROPAN-2-YLAMINO)ACETIC ACID"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##