data_NAI # _chem_comp.id NAI _chem_comp.name "1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H29 N7 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms NADH _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-12-13 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 665.441 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NAI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EK6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NAI PA AP P 0 1 N N S N N N 33.720 21.097 42.151 -0.830 0.715 0.782 PA NAI 1 NAI O1A AO1 O 0 1 N N N N N N 32.300 21.491 42.270 -1.220 -0.283 1.803 O1A NAI 2 NAI O2A AO2 O 0 1 N N N N N N 34.461 20.851 43.450 -0.185 2.000 1.506 O2A NAI 3 NAI O5B AO5* O 0 1 N N N N N N 34.582 22.165 41.334 -2.131 1.165 -0.053 O5B NAI 4 NAI C5B AC5* C 0 1 N N N N N N 34.006 23.115 40.422 -3.094 1.623 0.898 C5B NAI 5 NAI C4B AC4* C 0 1 N N R N N N 34.401 24.461 40.964 -4.362 2.068 0.167 C4B NAI 6 NAI O4B AO4* O 0 1 N N N N N N 33.842 25.453 40.072 -4.998 0.933 -0.444 O4B NAI 7 NAI C3B AC3* C 0 1 N N S N N N 33.815 24.790 42.364 -5.361 2.672 1.172 C3B NAI 8 NAI O3B AO3* O 0 1 N N N N N N 34.830 25.236 43.278 -5.655 4.031 0.839 O3B NAI 9 NAI C2B AC2* C 0 1 N N R N N N 32.755 25.872 42.023 -6.628 1.790 1.019 C2B NAI 10 NAI O2B AO2* O 0 1 N N N N N N 32.577 26.831 43.100 -7.812 2.589 1.052 O2B NAI 11 NAI C1B AC1* C 0 1 N N R N N N 33.358 26.532 40.787 -6.422 1.166 -0.385 C1B NAI 12 NAI N9A AN9 N 0 1 Y N N N N N 32.381 27.168 39.943 -7.156 -0.096 -0.505 N9A NAI 13 NAI C8A AC8 C 0 1 Y N N N N N 31.151 26.722 39.577 -6.678 -1.339 -0.209 C8A NAI 14 NAI N7A AN7 N 0 1 Y N N N N N 30.501 27.564 38.756 -7.598 -2.233 -0.432 N7A NAI 15 NAI C5A AC5 C 0 1 Y N N N N N 31.400 28.603 38.591 -8.720 -1.623 -0.883 C5A NAI 16 NAI C6A AC6 C 0 1 Y N N N N N 31.295 29.824 37.868 -9.995 -2.064 -1.275 C6A NAI 17 NAI N6A AN6 N 0 1 N N N N N N 30.236 30.208 37.144 -10.319 -3.409 -1.244 N6A NAI 18 NAI N1A AN1 N 0 1 Y N N N N N 32.362 30.639 37.930 -10.883 -1.160 -1.676 N1A NAI 19 NAI C2A AC2 C 0 1 Y N N N N N 33.445 30.286 38.705 -10.583 0.125 -1.708 C2A NAI 20 NAI N3A AN3 N 0 1 Y N N N N N 33.631 29.183 39.411 -9.402 0.585 -1.350 N3A NAI 21 NAI C4A AC4 C 0 1 Y N N N N N 32.551 28.387 39.326 -8.452 -0.244 -0.930 C4A NAI 22 NAI O3 O3 O 0 1 N N N N N N 33.806 19.827 41.237 0.251 0.064 -0.219 O3 NAI 23 NAI PN NP P 0 1 N N S N N N 35.095 18.935 40.784 1.247 -0.822 0.684 PN NAI 24 NAI O1N NO1 O 0 1 N N N N N N 34.870 17.546 41.211 0.555 -2.238 1.014 O1N NAI 25 NAI O2N NO2 O 0 1 N N N N N N 36.350 19.543 41.257 1.535 -0.107 1.948 O2N NAI 26 NAI O5D NO5* O 0 1 N N N N N N 35.055 19.015 39.180 2.621 -1.070 -0.117 O5D NAI 27 NAI C5D NC5* C 0 1 N N N N N N 35.836 19.985 38.468 3.501 -1.756 0.775 C5D NAI 28 NAI C4D NC4* C 0 1 N N R N N N 35.471 19.829 36.997 4.833 -2.024 0.072 C4D NAI 29 NAI O4D NO4* O 0 1 N N N N N N 35.704 18.438 36.584 5.518 -0.781 -0.198 O4D NAI 30 NAI C3D NC3* C 0 1 N N S N N N 34.060 20.185 36.560 5.787 -2.807 1.001 C3D NAI 31 NAI O3D NO3* O 0 1 N N N N N N 34.018 20.823 35.270 5.754 -4.201 0.692 O3D NAI 32 NAI C2D NC2* C 0 1 N N R N N N 33.421 18.782 36.499 7.183 -2.215 0.692 C2D NAI 33 NAI O2D NO2* O 0 1 N N N N N N 32.279 18.778 35.612 8.055 -3.228 0.185 O2D NAI 34 NAI C1D NC1* C 0 1 N N R N N N 34.560 17.929 35.979 6.904 -1.143 -0.385 C1D NAI 35 NAI N1N NN1 N 0 1 N N N N N N 34.437 16.478 36.224 7.768 0.022 -0.180 N1N NAI 36 NAI C2N NC2 C 0 1 N N N N N N 34.466 16.104 37.551 8.689 0.365 -1.129 C2N NAI 37 NAI C3N NC3 C 0 1 N N N N N N 34.317 14.752 37.813 9.234 1.595 -1.138 C3N NAI 38 NAI C7N NC7 C 0 1 N N N N N N 34.100 14.190 39.218 10.192 1.922 -2.126 C7N NAI 39 NAI O7N NO7 O 0 1 N N N N N N 33.880 12.996 39.350 10.515 1.093 -2.958 O7N NAI 40 NAI N7N NN7 N 0 1 N N N N N N 34.199 14.992 40.305 10.747 3.150 -2.147 N7N NAI 41 NAI C4N NC4 C 0 1 N N N N N N 34.661 13.797 36.786 8.850 2.627 -0.116 C4N NAI 42 NAI C5N NC5 C 0 1 N N N N N N 34.463 14.292 35.469 8.142 1.995 1.046 C5N NAI 43 NAI C6N NC6 C 0 1 N N N N N N 34.335 15.596 35.127 7.650 0.778 0.979 C6N NAI 44 NAI HOA2 2HOA H 0 0 N N N N N N 35.373 20.597 43.373 0.055 2.624 0.807 HOA2 NAI 45 NAI H51A AH51 H 0 0 N N N N N N 34.296 22.953 39.357 -3.337 0.814 1.587 H51A NAI 46 NAI H52A AH52 H 0 0 N N N N N N 32.907 22.991 40.274 -2.682 2.464 1.457 H52A NAI 47 NAI H4B AH4* H 0 1 N N N N N N 35.513 24.458 41.045 -4.110 2.806 -0.595 H4B NAI 48 NAI H3B AH3* H 0 1 N N N N N N 33.374 23.915 42.897 -4.970 2.605 2.186 H3B NAI 49 NAI HO3A AHO3 H 0 0 N N N N N N 34.471 25.437 44.134 -6.329 4.332 1.465 HO3A NAI 50 NAI H2B AH2* H 0 1 N N N N N N 31.735 25.449 41.862 -6.660 1.017 1.787 H2B NAI 51 NAI HO2A AHO2 H 0 0 N N N N N N 31.928 27.493 42.891 -7.883 2.946 1.948 HO2A NAI 52 NAI H1B AH1* H 0 1 N N N N N N 34.093 27.315 41.085 -6.729 1.863 -1.164 H1B NAI 53 NAI H8A AH8 H 0 1 N N N N N N 30.719 25.764 39.915 -5.684 -1.550 0.155 H8A NAI 54 NAI H61A AH61 H 0 0 N N N N N N 30.160 31.083 36.625 -9.663 -4.060 -0.949 H61A NAI 55 NAI H62A AH62 H 0 0 N N N N N N 29.428 30.166 37.765 -11.203 -3.702 -1.517 H62A NAI 56 NAI H2A AH2 H 0 1 N N N N N N 34.289 30.992 38.770 -11.334 0.826 -2.041 H2A NAI 57 NAI HO1N 1NHO H 0 0 N N N N N N 35.620 17.026 40.947 0.384 -2.670 0.166 HO1N NAI 58 NAI H51N NH51 H 0 0 N N N N N N 35.706 21.024 38.849 3.051 -2.703 1.074 H51N NAI 59 NAI H52N NH52 H 0 0 N N N N N N 36.930 19.903 38.664 3.674 -1.141 1.659 H52N NAI 60 NAI H4D NH4* H 0 1 N N N N N N 36.127 20.584 36.505 4.668 -2.575 -0.854 H4D NAI 61 NAI H3D NH3* H 0 1 N N N N N N 33.554 20.914 37.234 5.524 -2.641 2.045 H3D NAI 62 NAI HO3N NHO3 H 0 0 N N N N N N 33.135 21.045 34.996 6.366 -4.637 1.301 HO3N NAI 63 NAI H2D NH2* H 0 1 N N N N N N 33.021 18.416 37.473 7.609 -1.757 1.584 H2D NAI 64 NAI HO2N NHO2 H 0 0 N N N N N N 31.885 17.914 35.574 8.141 -3.896 0.879 HO2N NAI 65 NAI H1D NH1* H 0 1 N N N N N N 34.574 17.992 34.865 7.057 -1.557 -1.381 H1D NAI 66 NAI H2N NH2 H 0 1 N N N N N N 34.600 16.844 38.357 8.980 -0.356 -1.879 H2N NAI 67 NAI H71N NH71 H 0 0 N N N N N N 34.382 15.989 40.194 11.404 3.374 -2.825 H71N NAI 68 NAI H72N NH72 H 0 0 N N N N N N 34.054 14.617 41.242 10.486 3.811 -1.487 H72N NAI 69 NAI H4N NH4 H 0 1 N N N N N N 35.706 13.431 36.918 8.190 3.356 -0.584 H4N NAI 70 NAI H42N 2NH4 H 0 0 N N N N N N 34.110 12.838 36.935 9.746 3.134 0.244 H42N NAI 71 NAI H5N NH5 H 0 1 N N N N N N 34.402 13.588 34.621 8.037 2.554 1.964 H5N NAI 72 NAI H6N NH6 H 0 1 N N N N N N 34.167 15.902 34.080 7.146 0.359 1.838 H6N NAI 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NAI PA O1A DOUB N N 1 NAI PA O2A SING N N 2 NAI PA O5B SING N N 3 NAI PA O3 SING N N 4 NAI O2A HOA2 SING N N 5 NAI O5B C5B SING N N 6 NAI C5B C4B SING N N 7 NAI C5B H51A SING N N 8 NAI C5B H52A SING N N 9 NAI C4B O4B SING N N 10 NAI C4B C3B SING N N 11 NAI C4B H4B SING N N 12 NAI O4B C1B SING N N 13 NAI C3B O3B SING N N 14 NAI C3B C2B SING N N 15 NAI C3B H3B SING N N 16 NAI O3B HO3A SING N N 17 NAI C2B O2B SING N N 18 NAI C2B C1B SING N N 19 NAI C2B H2B SING N N 20 NAI O2B HO2A SING N N 21 NAI C1B N9A SING N N 22 NAI C1B H1B SING N N 23 NAI N9A C8A SING Y N 24 NAI N9A C4A SING Y N 25 NAI C8A N7A DOUB Y N 26 NAI C8A H8A SING N N 27 NAI N7A C5A SING Y N 28 NAI C5A C6A SING Y N 29 NAI C5A C4A DOUB Y N 30 NAI C6A N6A SING N N 31 NAI C6A N1A DOUB Y N 32 NAI N6A H61A SING N N 33 NAI N6A H62A SING N N 34 NAI N1A C2A SING Y N 35 NAI C2A N3A DOUB Y N 36 NAI C2A H2A SING N N 37 NAI N3A C4A SING Y N 38 NAI O3 PN SING N N 39 NAI PN O1N SING N N 40 NAI PN O2N DOUB N N 41 NAI PN O5D SING N N 42 NAI O1N HO1N SING N N 43 NAI O5D C5D SING N N 44 NAI C5D C4D SING N N 45 NAI C5D H51N SING N N 46 NAI C5D H52N SING N N 47 NAI C4D O4D SING N N 48 NAI C4D C3D SING N N 49 NAI C4D H4D SING N N 50 NAI O4D C1D SING N N 51 NAI C3D O3D SING N N 52 NAI C3D C2D SING N N 53 NAI C3D H3D SING N N 54 NAI O3D HO3N SING N N 55 NAI C2D O2D SING N N 56 NAI C2D C1D SING N N 57 NAI C2D H2D SING N N 58 NAI O2D HO2N SING N N 59 NAI C1D N1N SING N N 60 NAI C1D H1D SING N N 61 NAI N1N C2N SING N N 62 NAI N1N C6N SING N N 63 NAI C2N C3N DOUB N N 64 NAI C2N H2N SING N N 65 NAI C3N C7N SING N N 66 NAI C3N C4N SING N N 67 NAI C7N O7N DOUB N N 68 NAI C7N N7N SING N N 69 NAI N7N H71N SING N N 70 NAI N7N H72N SING N N 71 NAI C4N C5N SING N N 72 NAI C4N H4N SING N N 73 NAI C4N H42N SING N N 74 NAI C5N C6N DOUB N N 75 NAI C5N H5N SING N N 76 NAI C6N H6N SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NAI SMILES_CANONICAL CACTVS 3.341 "NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" NAI SMILES CACTVS 3.341 "NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" NAI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CCC(=C5)C(=O)N)O)O)O)O)N" NAI SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)O)N" NAI InChI InChI 1.03 "InChI=1S/C21H29N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1,3-4,7-8,10-11,13-16,20-21,29-32H,2,5-6H2,(H2,23,33)(H,34,35)(H,36,37)(H2,22,24,25)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1" NAI InChIKey InChI 1.03 BOPGDPNILDQYTO-NNYOXOHSSA-N # _pdbx_chem_comp_identifier.comp_id NAI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.5.0 _pdbx_chem_comp_identifier.identifier "[[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NAI "Create component" 1999-12-13 RCSB NAI "Modify descriptor" 2011-06-04 RCSB NAI "Modify synonyms" 2021-03-01 PDBE NAI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NAI _pdbx_chem_comp_synonyms.name NADH _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id NAI _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom O3B _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #