data_NAT # _chem_comp.id NAT _chem_comp.name "ETHYL 4-(3-HYDROXYPHENYL)-6-METHYL-2-THIOXO-1,2,3,4-TETRAHYDROPYRIMIDINE-5-CARBOXYLATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H16 N2 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms MONASTROL _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-07-21 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 292.353 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NAT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1Q0B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NAT C1 C1 C 0 1 Y N N 18.944 14.071 112.221 -0.027 -1.936 -0.875 C1 NAT 1 NAT C2 C2 C 0 1 Y N N 17.944 13.443 111.365 0.397 -1.135 0.170 C2 NAT 2 NAT C3 C3 C 0 1 Y N N 16.900 12.619 111.914 1.707 -1.199 0.604 C3 NAT 3 NAT C4 C4 C 0 1 Y N N 16.870 12.448 113.360 2.595 -2.075 -0.003 C4 NAT 4 NAT C5 C5 C 0 1 Y N N 17.841 13.103 114.210 2.168 -2.877 -1.051 C5 NAT 5 NAT C6 C6 C 0 1 Y N N 18.913 13.916 113.664 0.858 -2.806 -1.485 C6 NAT 6 NAT C7 C7 C 0 1 N N R 18.023 13.606 109.893 -0.570 -0.188 0.833 C7 NAT 7 NAT N8 N8 N 0 1 N N N 19.321 13.198 109.344 -1.867 -0.874 0.954 N8 NAT 8 NAT C9 C9 C 0 1 N N N 20.214 14.045 108.786 -2.947 -0.312 0.377 C9 NAT 9 NAT N10 N10 N 0 1 N N N 19.883 15.340 108.645 -2.875 0.845 -0.293 N10 NAT 10 NAT C11 C11 C 0 1 N N N 18.539 15.829 108.947 -1.722 1.557 -0.455 C11 NAT 11 NAT C12 C12 C 0 1 N N N 17.604 14.993 109.455 -0.555 1.120 0.067 C12 NAT 12 NAT O13 O13 O 0 1 N N N 15.941 11.646 113.916 3.883 -2.143 0.425 O13 NAT 13 NAT C14 C14 C 0 1 N N N 16.171 15.386 109.676 0.641 1.856 -0.100 C14 NAT 14 NAT O15 O15 O 0 1 N N N 15.866 16.700 109.588 1.763 1.476 0.547 O15 NAT 15 NAT C16 C16 C 0 1 N N N 14.532 17.333 109.727 2.786 2.403 0.179 C16 NAT 16 NAT C17 C17 C 0 1 N N N 14.610 18.847 109.433 4.092 2.027 0.882 C17 NAT 17 NAT C18 C18 C 0 1 N N N 18.356 17.298 108.628 -1.751 2.850 -1.228 C18 NAT 18 NAT O19 O19 O 0 1 N N N 15.349 14.546 109.933 0.659 2.832 -0.827 O19 NAT 19 NAT S20 S20 S 0 1 N N N 21.695 13.517 108.229 -4.460 -1.103 0.503 S20 NAT 20 NAT H1 H1 H 0 1 N N N 19.726 14.665 111.771 -1.050 -1.881 -1.215 H1 NAT 21 NAT H3 H3 H 0 1 N N N 16.167 12.145 111.278 2.037 -0.573 1.419 H3 NAT 22 NAT H5 H5 H 0 1 N N N 17.766 12.984 115.281 2.858 -3.558 -1.527 H5 NAT 23 NAT H6 H6 H 0 1 N N N 19.651 14.382 114.300 0.525 -3.430 -2.300 H6 NAT 24 NAT H7 H7 H 0 1 N N N 17.291 12.909 109.459 -0.202 0.015 1.838 H7 NAT 25 NAT HN8 HN8 H 0 1 N N N 19.561 12.228 109.386 -1.942 -1.713 1.435 HN8 NAT 26 NAT HN10 HN10 H 0 0 N N N 20.575 15.987 108.325 -3.689 1.198 -0.686 HN10 NAT 27 NAT HO13 HO13 H 0 0 N N N 16.308 10.779 114.047 4.384 -1.496 -0.090 HO13 NAT 28 NAT H161 1H16 H 0 0 N N N 13.837 16.865 109.015 2.489 3.409 0.478 H161 NAT 29 NAT H162 2H16 H 0 0 N N N 14.180 17.191 110.759 2.933 2.374 -0.900 H162 NAT 30 NAT H171 1H17 H 0 0 N N N 13.593 19.260 109.363 3.945 2.057 1.962 H171 NAT 31 NAT H172 2H17 H 0 0 N N N 15.155 19.350 110.245 4.389 1.022 0.583 H172 NAT 32 NAT H173 3H17 H 0 0 N N N 15.137 19.009 108.481 4.872 2.735 0.602 H173 NAT 33 NAT H181 1H18 H 0 0 N N N 17.283 17.526 108.551 -1.464 2.661 -2.262 H181 NAT 34 NAT H182 2H18 H 0 0 N N N 18.803 17.905 109.429 -2.757 3.267 -1.200 H182 NAT 35 NAT H183 3H18 H 0 0 N N N 18.850 17.530 107.673 -1.052 3.556 -0.780 H183 NAT 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NAT C1 C2 DOUB Y N 1 NAT C1 C6 SING Y N 2 NAT C1 H1 SING N N 3 NAT C2 C3 SING Y N 4 NAT C2 C7 SING N N 5 NAT C3 C4 DOUB Y N 6 NAT C3 H3 SING N N 7 NAT C4 C5 SING Y N 8 NAT C4 O13 SING N N 9 NAT C5 C6 DOUB Y N 10 NAT C5 H5 SING N N 11 NAT C6 H6 SING N N 12 NAT C7 N8 SING N N 13 NAT C7 C12 SING N N 14 NAT C7 H7 SING N N 15 NAT N8 C9 SING N N 16 NAT N8 HN8 SING N N 17 NAT C9 N10 SING N N 18 NAT C9 S20 DOUB N N 19 NAT N10 C11 SING N N 20 NAT N10 HN10 SING N N 21 NAT C11 C12 DOUB N N 22 NAT C11 C18 SING N N 23 NAT C12 C14 SING N N 24 NAT O13 HO13 SING N N 25 NAT C14 O15 SING N N 26 NAT C14 O19 DOUB N N 27 NAT O15 C16 SING N N 28 NAT C16 C17 SING N N 29 NAT C16 H161 SING N N 30 NAT C16 H162 SING N N 31 NAT C17 H171 SING N N 32 NAT C17 H172 SING N N 33 NAT C17 H173 SING N N 34 NAT C18 H181 SING N N 35 NAT C18 H182 SING N N 36 NAT C18 H183 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NAT SMILES ACDLabs 10.04 "S=C2NC(c1cc(O)ccc1)C(=C(N2)C)C(=O)OCC" NAT SMILES_CANONICAL CACTVS 3.341 "CCOC(=O)C1=C(C)NC(=S)N[C@H]1c2cccc(O)c2" NAT SMILES CACTVS 3.341 "CCOC(=O)C1=C(C)NC(=S)N[CH]1c2cccc(O)c2" NAT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCOC(=O)C1=C(NC(=S)N[C@H]1c2cccc(c2)O)C" NAT SMILES "OpenEye OEToolkits" 1.5.0 "CCOC(=O)C1=C(NC(=S)NC1c2cccc(c2)O)C" NAT InChI InChI 1.03 "InChI=1S/C14H16N2O3S/c1-3-19-13(18)11-8(2)15-14(20)16-12(11)9-5-4-6-10(17)7-9/h4-7,12,17H,3H2,1-2H3,(H2,15,16,20)/t12-/m0/s1" NAT InChIKey InChI 1.03 LOBCDGHHHHGHFA-LBPRGKRZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAT "SYSTEMATIC NAME" ACDLabs 10.04 "ethyl (4S)-4-(3-hydroxyphenyl)-6-methyl-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate" NAT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "ethyl (4S)-4-(3-hydroxyphenyl)-6-methyl-2-sulfanylidene-3,4-dihydro-1H-pyrimidine-5-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NAT "Create component" 2003-07-21 RCSB NAT "Modify descriptor" 2011-06-04 RCSB NAT "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NAT _pdbx_chem_comp_synonyms.name MONASTROL _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##