data_NB3 # _chem_comp.id NB3 _chem_comp.name "~{N}-[(1-methylindazol-3-yl)methyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H15 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-[(1-methylindazol-3-yl)methyl]prop-2-enamide (precursor)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 217.267 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NB3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AOB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NB3 C1 C1 C 0 1 N N N N N N 12.492 8.566 42.043 -3.159 2.627 -0.460 C1 NB3 1 NB3 C5 C2 C 0 1 N N N N N N 7.977 9.274 43.809 1.072 0.359 1.006 C5 NB3 2 NB3 C7 C3 C 0 1 N N N N N N 5.948 8.006 43.332 3.269 0.009 0.012 C7 NB3 3 NB3 C10 C4 C 0 1 N N N N N N 4.297 6.338 42.285 5.609 -0.363 -0.719 C10 NB3 4 NB3 C11 C5 C 0 1 Y N N N N N 9.719 7.383 44.095 -1.338 -0.454 0.284 C11 NB3 5 NB3 C12 C6 C 0 1 Y N N N N N 9.176 6.409 44.939 -1.329 -1.851 0.359 C12 NB3 6 NB3 C13 C7 C 0 1 Y N N N N N 9.905 5.270 45.267 -2.453 -2.552 0.032 C13 NB3 7 NB3 C14 C8 C 0 1 Y N N N N N 11.185 5.084 44.757 -3.606 -1.891 -0.375 C14 NB3 8 NB3 C15 C9 C 0 1 Y N N N N N 11.744 6.042 43.916 -3.639 -0.528 -0.457 C15 NB3 9 NB3 C16 C10 C 0 1 Y N N N N N 11.004 7.182 43.592 -2.508 0.214 -0.129 C16 NB3 10 NB3 C9 C11 C 0 1 N N N N N N 4.841 7.767 42.319 4.170 -0.136 -1.188 C9 NB3 11 NB3 O8 O1 O 0 1 N N N N N N 5.922 7.501 44.455 3.732 -0.063 1.130 O8 NB3 12 NB3 N6 N1 N 0 1 N N N N N N 6.937 8.799 42.915 1.949 0.218 -0.159 N6 NB3 13 NB3 C4 C12 C 0 1 Y N N N N N 9.288 8.592 43.581 -0.345 0.583 0.545 C4 NB3 14 NB3 N3 N2 N 0 1 Y N N N N N 10.226 9.140 42.799 -0.902 1.736 0.309 N3 NB3 15 NB3 N2 N3 N 0 1 Y N N N N N 11.291 8.263 42.807 -2.225 1.555 -0.107 N2 NB3 16 NB3 H18 H1 H 0 1 N N N N N N 12.366 9.530 41.528 -3.077 2.844 -1.525 H18 NB3 17 NB3 H19 H2 H 0 1 N N N N N N 13.354 8.624 42.723 -4.177 2.311 -0.231 H19 NB3 18 NB3 H17 H3 H 0 1 N N N N N N 12.664 7.773 41.300 -2.918 3.522 0.113 H17 NB3 19 NB3 H20 H4 H 0 1 N N N N N N 8.110 10.355 43.652 1.120 -0.549 1.608 H20 NB3 20 NB3 H21 H5 H 0 1 N N N N N N 7.660 9.091 44.846 1.398 1.209 1.605 H21 NB3 21 NB3 H24 H6 H 0 1 N N N N N N 3.505 6.265 41.525 5.935 0.487 -0.120 H24 NB3 22 NB3 H25 H7 H 0 1 N N N N N N 5.111 5.642 42.034 5.656 -1.271 -0.118 H25 NB3 23 NB3 H1 H8 H 0 1 N Y N N N N 3.884 6.079 43.271 6.261 -0.468 -1.587 H1 NB3 24 NB3 H26 H9 H 0 1 N N N N N N 8.182 6.542 45.340 -0.437 -2.372 0.674 H26 NB3 25 NB3 H27 H10 H 0 1 N N N N N N 9.474 4.526 45.921 -2.447 -3.630 0.090 H27 NB3 26 NB3 H28 H11 H 0 1 N N N N N N 11.745 4.197 45.013 -4.486 -2.463 -0.631 H28 NB3 27 NB3 H29 H12 H 0 1 N N N N N N 12.739 5.906 43.518 -4.541 -0.027 -0.775 H29 NB3 28 NB3 H23 H13 H 0 1 N N N N N N 5.234 8.007 41.320 3.845 -0.986 -1.787 H23 NB3 29 NB3 H30 H14 H 0 1 N N N N N N 4.008 8.444 42.557 4.123 0.772 -1.789 H30 NB3 30 NB3 H22 H15 H 0 1 N N N N N N 6.962 9.075 41.954 1.579 0.276 -1.054 H22 NB3 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NB3 C1 N2 SING N N 1 NB3 C10 C9 SING N N 2 NB3 C9 C7 SING N N 3 NB3 N3 N2 SING Y N 4 NB3 N3 C4 DOUB Y N 5 NB3 N2 C16 SING Y N 6 NB3 N6 C7 SING N N 7 NB3 N6 C5 SING N N 8 NB3 C7 O8 DOUB N N 9 NB3 C4 C5 SING N N 10 NB3 C4 C11 SING Y N 11 NB3 C16 C15 DOUB Y N 12 NB3 C16 C11 SING Y N 13 NB3 C15 C14 SING Y N 14 NB3 C11 C12 DOUB Y N 15 NB3 C14 C13 DOUB Y N 16 NB3 C12 C13 SING Y N 17 NB3 C1 H18 SING N N 18 NB3 C1 H19 SING N N 19 NB3 C1 H17 SING N N 20 NB3 C5 H20 SING N N 21 NB3 C5 H21 SING N N 22 NB3 C10 H24 SING N N 23 NB3 C10 H25 SING N N 24 NB3 C10 H1 SING N N 25 NB3 C12 H26 SING N N 26 NB3 C13 H27 SING N N 27 NB3 C14 H28 SING N N 28 NB3 C15 H29 SING N N 29 NB3 C9 H23 SING N N 30 NB3 C9 H30 SING N N 31 NB3 N6 H22 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NB3 InChI InChI 1.06 "InChI=1S/C12H15N3O/c1-3-12(16)13-8-10-9-6-4-5-7-11(9)15(2)14-10/h4-7H,3,8H2,1-2H3,(H,13,16)" NB3 InChIKey InChI 1.06 DEHXEHSVIKWPOQ-UHFFFAOYSA-N NB3 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)NCc1nn(C)c2ccccc12" NB3 SMILES CACTVS 3.385 "CCC(=O)NCc1nn(C)c2ccccc12" NB3 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)NCc1c2ccccc2n(n1)C" NB3 SMILES "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)NCc1c2ccccc2n(n1)C" # _pdbx_chem_comp_identifier.comp_id NB3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "~{N}-[(1-methylindazol-3-yl)methyl]propanamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NB3 _pdbx_chem_comp_synonyms.name "N-[(1-methylindazol-3-yl)methyl]prop-2-enamide (precursor)" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type "Cn1nc(CNC(=O)C=C)c2ccccc12" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NB3 "Create component" 2022-08-16 PDBE NB3 "Initial release" 2022-09-28 RCSB NB3 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id NB3 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C10 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #