data_NBP # _chem_comp.id NBP _chem_comp.name "NICOTINAMIDE 8-BROMO-ADENINE DINUCLEOTIDE PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 Br N7 O17 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 822.301 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NBP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PGN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NBP PA AP P 0 1 N N S 24.672 19.412 45.989 0.456 0.834 0.271 PA NBP 1 NBP O1A AO1 O 0 1 N N N 26.009 19.127 45.400 0.058 0.085 1.484 O1A NBP 2 NBP O2A AO2 O 0 1 N N N 24.615 19.645 47.465 1.043 2.272 0.696 O2A NBP 3 NBP O5B AO5* O 0 1 N N N 23.666 18.197 45.645 -0.828 1.039 -0.678 O5B NBP 4 NBP C5B AC5* C 0 1 N N N 22.936 17.610 46.740 -1.833 1.671 0.117 C5B NBP 5 NBP C4B AC4* C 0 1 N N R 22.378 16.239 46.379 -3.088 1.895 -0.730 C4B NBP 6 NBP O4B AO4* O 0 1 N N N 23.347 15.425 45.675 -3.674 0.630 -1.079 O4B NBP 7 NBP C3B AC3* C 0 1 N N R 21.990 15.487 47.642 -4.135 2.681 0.083 C3B NBP 8 NBP O3B AO3* O 0 1 N N N 20.666 14.949 47.545 -4.453 3.917 -0.561 O3B NBP 9 NBP C2B AC2* C 0 1 N N R 23.008 14.362 47.653 -5.373 1.746 0.105 C2B NBP 10 NBP O2B AO2* O 0 1 N N N 22.543 13.246 48.394 -6.578 2.493 -0.077 O2B NBP 11 NBP C1B AC1* C 0 1 N N R 23.206 14.093 46.179 -5.105 0.824 -1.112 C1B NBP 12 NBP N9A AN9 N 0 1 Y N N 24.399 13.291 45.837 -5.802 -0.455 -0.957 N9A NBP 13 NBP C8A AC8 C 0 1 Y N N 25.665 13.663 46.024 -5.490 -1.442 -0.069 C8A NBP 14 NBP BR8 BR8 BR 0 0 N N N 26.199 15.309 46.747 -4.068 -1.373 1.175 BR8 NBP 15 NBP N7A AN7 N 0 1 Y N N 26.503 12.691 45.627 -6.318 -2.439 -0.204 N7A NBP 16 NBP C5A AC5 C 0 1 Y N N 25.705 11.731 45.208 -7.209 -2.156 -1.184 C5A NBP 17 NBP C6A AC6 C 0 1 Y N N 26.152 10.477 44.775 -8.300 -2.833 -1.753 C6A NBP 18 NBP N6A AN6 N 0 1 N N N 27.458 10.191 44.724 -8.663 -4.092 -1.306 N6A NBP 19 NBP N1A AN1 N 0 1 Y N N 25.199 9.584 44.448 -8.977 -2.238 -2.730 N1A NBP 20 NBP C2A AC2 C 0 1 Y N N 23.901 9.915 44.537 -8.638 -1.037 -3.162 C2A NBP 21 NBP N3A AN3 N 0 1 Y N N 23.480 11.123 44.965 -7.624 -0.365 -2.659 N3A NBP 22 NBP C4A AC4 C 0 1 Y N N 24.378 12.050 45.316 -6.893 -0.878 -1.676 C4A NBP 23 NBP O3 O3 O 0 1 N N N 23.970 20.605 45.180 1.585 0.007 -0.524 O3 NBP 24 NBP PN NP P 0 1 N N N 22.727 21.573 45.519 2.573 -0.616 0.584 PN NBP 25 NBP O1N NO1 O 0 1 N N N 22.917 22.771 44.653 1.934 -1.886 1.187 O1N NBP 26 NBP O2N NO2 O -1 1 N N N 22.635 21.750 46.999 2.811 0.422 1.703 O2N NBP 27 NBP O5D NO5* O 0 1 N N N 21.443 20.712 45.020 3.978 -0.996 -0.103 O5D NBP 28 NBP C5D NC5* C 0 1 N N N 21.452 20.032 43.749 4.847 -1.430 0.945 C5D NBP 29 NBP C4D NC4* C 0 1 N N R 20.933 20.895 42.599 6.207 -1.809 0.357 C4D NBP 30 NBP O4D NO4* O 0 1 N N N 19.940 21.872 43.019 6.869 -0.639 -0.174 O4D NBP 31 NBP C3D NC3* C 0 1 N N S 22.018 21.694 41.885 7.150 -2.326 1.466 C3D NBP 32 NBP O3D NO3* O 0 1 N N N 22.693 20.955 40.855 7.163 -3.755 1.485 O3D NBP 33 NBP C2D NC2* C 0 1 N N R 21.153 22.749 41.196 8.540 -1.776 1.065 C2D NBP 34 NBP O2D NO2* O 0 1 N N N 20.468 22.217 40.042 9.453 -2.849 0.828 O2D NBP 35 NBP C1D NC1* C 0 1 N N R 20.123 23.101 42.256 8.269 -0.989 -0.236 C1D NBP 36 NBP N1N NN1 N 1 1 Y N N 20.449 24.331 43.033 9.095 0.219 -0.283 N1N NBP 37 NBP C2N NC2 C 0 1 Y N N 20.147 24.381 44.417 10.178 0.225 -1.032 C2N NBP 38 NBP C3N NC3 C 0 1 Y N N 20.145 25.579 45.125 10.992 1.357 -1.094 C3N NBP 39 NBP C7N NC7 C 0 1 N N N 19.764 25.585 46.613 12.211 1.361 -1.929 C7N NBP 40 NBP O7N NO7 O 0 1 N N N 19.078 24.681 47.126 12.515 0.371 -2.566 O7N NBP 41 NBP N7N NN7 N 0 1 N N N 20.198 26.611 47.333 12.986 2.463 -1.985 N7N NBP 42 NBP C4N NC4 C 0 1 Y N N 20.471 26.763 44.437 10.630 2.491 -0.356 C4N NBP 43 NBP C5N NC5 C 0 1 Y N N 20.812 26.738 43.078 9.479 2.436 0.410 C5N NBP 44 NBP C6N NC6 C 0 1 Y N N 20.806 25.532 42.374 8.730 1.273 0.423 C6N NBP 45 NBP P2B AP2* P 0 1 N N N 23.037 13.231 49.932 -7.559 2.096 1.136 P2B NBP 46 NBP O1X AOP1 O 0 1 N N N 24.515 13.170 49.823 -6.869 2.329 2.425 O1X NBP 47 NBP O2X AOP2 O 0 1 N N N 22.344 12.023 50.468 -8.889 3.000 1.068 O2X NBP 48 NBP O3X AOP3 O 0 1 N N N 22.559 14.513 50.509 -7.959 0.541 1.016 O3X NBP 49 NBP HOA2 2HOA H 0 0 N N N 23.761 19.826 47.840 1.290 2.726 -0.121 HOA2 NBP 50 NBP H51A AH51 H 0 0 N N N 23.558 17.564 47.664 -2.078 1.034 0.967 H51A NBP 51 NBP H52A AH52 H 0 0 N N N 22.132 18.292 47.103 -1.462 2.630 0.477 H52A NBP 52 NBP H4B AH4* H 0 1 N N N 21.495 16.416 45.721 -2.830 2.447 -1.634 H4B NBP 53 NBP H3B AH3* H 0 1 N N N 21.988 16.125 48.556 -3.775 2.861 1.096 H3B NBP 54 NBP HO3A AHO3 H 0 0 N N N 20.423 14.479 48.334 -3.649 4.455 -0.545 HO3A NBP 55 NBP H2B AH2* H 0 1 N N N 23.968 14.609 48.162 -5.410 1.170 1.029 H2B NBP 56 NBP H1B AH1* H 0 1 N N N 22.372 13.484 45.757 -5.405 1.314 -2.038 H1B NBP 57 NBP H61A AH61 H 0 0 N N N 27.783 9.277 44.408 -8.162 -4.517 -0.593 H61A NBP 58 NBP H62A AH62 H 0 0 N N N 27.857 10.368 45.645 -9.418 -4.550 -1.707 H62A NBP 59 NBP H2A AH2 H 0 1 N N N 23.148 9.162 44.246 -9.215 -0.589 -3.958 H2A NBP 60 NBP H51N NH51 H 0 0 N N N 22.468 19.634 43.519 4.412 -2.297 1.442 H51N NBP 61 NBP H52N NH52 H 0 0 N N N 20.888 19.071 43.809 4.975 -0.624 1.668 H52N NBP 62 NBP H4D NH4* H 0 1 N N N 20.490 20.137 41.911 6.087 -2.562 -0.421 H4D NBP 63 NBP H3D NH3* H 0 1 N N N 22.819 22.039 42.579 6.849 -1.935 2.437 H3D NBP 64 NBP HO3N NHO3 H 0 0 N N N 23.368 21.452 40.410 7.766 -4.019 2.194 HO3N NBP 65 NBP H2D NH2* H 0 1 N N N 21.762 23.609 40.833 8.925 -1.112 1.839 H2D NBP 66 NBP HO2N NHO2 H 0 0 N N N 19.930 22.872 39.613 9.534 -3.337 1.659 HO2N NBP 67 NBP H1D NH1* H 0 1 N N N 19.147 23.416 41.817 8.465 -1.616 -1.106 H1D NBP 68 NBP H2N NH2 H 0 1 N N N 19.904 23.453 44.963 10.444 -0.657 -1.595 H2N NBP 69 NBP H71N NH71 H 0 0 N N N 20.759 27.351 46.912 13.786 2.466 -2.534 H71N NBP 70 NBP H72N NH72 H 0 0 N N N 19.945 26.615 48.321 12.741 3.254 -1.481 H72N NBP 71 NBP H4N NH4 H 0 1 N N N 20.459 27.727 44.972 11.234 3.386 -0.384 H4N NBP 72 NBP H5N NH5 H 0 1 N N N 21.086 27.672 42.559 9.170 3.291 0.993 H5N NBP 73 NBP H6N NH6 H 0 1 N N N 21.081 25.528 41.305 7.831 1.227 1.020 H6N NBP 74 NBP HOP2 2HOP H 0 0 N N N 22.634 12.014 51.372 -9.448 2.731 1.811 HOP2 NBP 75 NBP HOP3 3HOP H 0 0 N N N 22.849 14.504 51.413 -8.405 0.432 0.165 HOP3 NBP 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NBP PA O1A DOUB N N 1 NBP PA O2A SING N N 2 NBP PA O5B SING N N 3 NBP PA O3 SING N N 4 NBP O2A HOA2 SING N N 5 NBP O5B C5B SING N N 6 NBP C5B C4B SING N N 7 NBP C5B H51A SING N N 8 NBP C5B H52A SING N N 9 NBP C4B O4B SING N N 10 NBP C4B C3B SING N N 11 NBP C4B H4B SING N N 12 NBP O4B C1B SING N N 13 NBP C3B O3B SING N N 14 NBP C3B C2B SING N N 15 NBP C3B H3B SING N N 16 NBP O3B HO3A SING N N 17 NBP C2B O2B SING N N 18 NBP C2B C1B SING N N 19 NBP C2B H2B SING N N 20 NBP O2B P2B SING N N 21 NBP C1B N9A SING N N 22 NBP C1B H1B SING N N 23 NBP N9A C8A SING Y N 24 NBP N9A C4A SING Y N 25 NBP C8A BR8 SING N N 26 NBP C8A N7A DOUB Y N 27 NBP N7A C5A SING Y N 28 NBP C5A C6A SING Y N 29 NBP C5A C4A DOUB Y N 30 NBP C6A N6A SING N N 31 NBP C6A N1A DOUB Y N 32 NBP N6A H61A SING N N 33 NBP N6A H62A SING N N 34 NBP N1A C2A SING Y N 35 NBP C2A N3A DOUB Y N 36 NBP C2A H2A SING N N 37 NBP N3A C4A SING Y N 38 NBP O3 PN SING N N 39 NBP PN O1N DOUB N N 40 NBP PN O2N SING N N 41 NBP PN O5D SING N N 42 NBP O5D C5D SING N N 43 NBP C5D C4D SING N N 44 NBP C5D H51N SING N N 45 NBP C5D H52N SING N N 46 NBP C4D O4D SING N N 47 NBP C4D C3D SING N N 48 NBP C4D H4D SING N N 49 NBP O4D C1D SING N N 50 NBP C3D O3D SING N N 51 NBP C3D C2D SING N N 52 NBP C3D H3D SING N N 53 NBP O3D HO3N SING N N 54 NBP C2D O2D SING N N 55 NBP C2D C1D SING N N 56 NBP C2D H2D SING N N 57 NBP O2D HO2N SING N N 58 NBP C1D N1N SING N N 59 NBP C1D H1D SING N N 60 NBP N1N C2N SING Y N 61 NBP N1N C6N DOUB Y N 62 NBP C2N C3N DOUB Y N 63 NBP C2N H2N SING N N 64 NBP C3N C7N SING N N 65 NBP C3N C4N SING Y N 66 NBP C7N O7N DOUB N N 67 NBP C7N N7N SING N N 68 NBP N7N H71N SING N N 69 NBP N7N H72N SING N N 70 NBP C4N C5N DOUB Y N 71 NBP C4N H4N SING N N 72 NBP C5N C6N SING Y N 73 NBP C5N H5N SING N N 74 NBP C6N H6N SING N N 75 NBP P2B O1X DOUB N N 76 NBP P2B O2X SING N N 77 NBP P2B O3X SING N N 78 NBP O2X HOP2 SING N N 79 NBP O3X HOP3 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NBP SMILES_CANONICAL CACTVS 3.341 "NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4c(Br)nc5c(N)ncnc45)[C@@H](O)[C@H]2O" NBP SMILES CACTVS 3.341 "NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4c(Br)nc5c(N)ncnc45)[CH](O)[CH]2O" NBP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4c5c(c(ncn5)N)nc4Br)OP(=O)(O)O)O)O)O)C(=O)N" NBP SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4c5c(c(ncn5)N)nc4Br)OP(=O)(O)O)O)O)O)C(=O)N" NBP InChI InChI 1.03 ;InChI=1S/C21H27BrN7O17P3/c22-21-27-11-16(23)25-7-26-18(11)29(21)20-15(45-47(34,35)36)13(31)10(44-20)6-42-49(39,40)46-48(37,38)41-5-9-12(30)14(32)19(43-9)28-3-1-2-8(4-28)17(24)33/h1-4,7,9-10,12-15,19-20,30-32H,5-6H2,(H7-,23,24,25,26,33,34,35,36,37,38,39,40)/t9-,10-,12-,13-,14-,15-,19-,20-/m1/s1 ; NBP InChIKey InChI 1.03 MDKMTCCUJSRQGW-NAJQWHGHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NBP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3R,4R,5R)-5-(6-amino-8-bromo-purin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4R,5R)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NBP "Create component" 1999-07-08 RCSB NBP "Modify descriptor" 2011-06-04 RCSB #