data_ND6 # _chem_comp.id ND6 _chem_comp.name "6-[4-({4-[(2R)-1-hydroxypropan-2-yl]phenyl}acetyl)piperazin-1-yl]pyridazine-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-31 _chem_comp.pdbx_modified_date 2023-03-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 365.429 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ND6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UE3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ND6 C01 C1 C 0 1 N N N -30.359 -14.575 -5.314 7.895 0.824 -0.394 C01 ND6 1 ND6 C02 C2 C 0 1 N N R -31.809 -14.050 -5.445 6.941 0.658 0.790 C02 ND6 2 ND6 C03 C3 C 0 1 N N N -32.898 -15.126 -5.354 7.342 -0.577 1.599 C03 ND6 3 ND6 C04 C4 C 0 1 Y N N -31.978 -13.265 -6.746 5.532 0.490 0.281 C04 ND6 4 ND6 C05 C5 C 0 1 Y N N -32.037 -13.915 -7.972 5.219 -0.572 -0.546 C05 ND6 5 ND6 C06 C6 C 0 1 Y N N -32.176 -13.161 -9.127 3.926 -0.730 -1.009 C06 ND6 6 ND6 C07 C7 C 0 1 Y N N -32.227 -11.775 -9.086 2.946 0.175 -0.644 C07 ND6 7 ND6 C08 C8 C 0 1 N N N -32.376 -10.956 -10.350 1.537 0.004 -1.149 C08 ND6 8 ND6 C09 C9 C 0 1 N N N -33.830 -10.823 -10.746 0.757 -0.847 -0.181 C09 ND6 9 ND6 C11 C10 C 0 1 N N N -35.399 -10.237 -12.527 -1.316 -1.964 0.505 C11 ND6 10 ND6 C12 C11 C 0 1 N N N -35.572 -8.921 -13.239 -2.619 -1.228 0.837 C12 ND6 11 ND6 C14 C12 C 0 1 Y N N -34.809 -8.086 -15.509 -4.569 -0.355 -0.149 C14 ND6 12 ND6 C17 C13 C 0 1 Y N N -35.477 -6.870 -17.754 -6.990 0.741 0.305 C17 ND6 13 ND6 C18 C14 C 0 1 N N N -35.899 -6.197 -19.034 -8.262 1.364 0.520 C18 ND6 14 ND6 C20 C15 C 0 1 Y N N -34.127 -7.220 -17.604 -6.728 -0.526 0.842 C20 ND6 15 ND6 C21 C16 C 0 1 Y N N -33.759 -7.875 -16.406 -5.486 -1.086 0.608 C21 ND6 16 ND6 C22 C17 C 0 1 N N N -33.127 -8.947 -13.836 -2.512 0.054 -1.218 C22 ND6 17 ND6 C23 C18 C 0 1 N N N -32.974 -10.116 -12.896 -1.206 -0.630 -1.635 C23 ND6 18 ND6 C25 C19 C 0 1 Y N N -32.160 -11.128 -7.879 3.260 1.237 0.183 C25 ND6 19 ND6 C26 C20 C 0 1 Y N N -32.033 -11.873 -6.724 4.553 1.395 0.646 C26 ND6 20 ND6 N10 N1 N 0 1 N N N -34.080 -10.370 -12.046 -0.537 -1.136 -0.427 N10 ND6 21 ND6 N13 N2 N 0 1 N N N -34.523 -8.747 -14.285 -3.311 -0.877 -0.409 N13 ND6 22 ND6 N15 N3 N 0 1 Y N N -36.040 -7.714 -15.714 -4.905 0.839 -0.624 N15 ND6 23 ND6 N16 N4 N 0 1 Y N N -36.386 -7.115 -16.855 -6.057 1.361 -0.408 N16 ND6 24 ND6 N19 N5 N 0 1 N N N -36.154 -5.675 -20.006 -9.271 1.857 0.690 N19 ND6 25 ND6 O04 O1 O 0 1 N N N -29.387 -13.536 -5.335 9.211 1.100 0.090 O04 ND6 26 ND6 O24 O2 O 0 1 N N N -34.740 -11.066 -10.059 1.292 -1.273 0.821 O24 ND6 27 ND6 H1 H1 H 0 1 N N N -30.268 -15.120 -4.363 7.909 -0.094 -0.981 H1 ND6 28 ND6 H2 H2 H 0 1 N N N -30.158 -15.260 -6.151 7.557 1.651 -1.019 H2 ND6 29 ND6 H3 H3 H 0 1 N N N -31.975 -13.347 -4.615 6.994 1.542 1.427 H3 ND6 30 ND6 H4 H4 H 0 1 N N N -32.778 -15.692 -4.418 6.662 -0.695 2.443 H4 ND6 31 ND6 H5 H5 H 0 1 N N N -33.888 -14.647 -5.368 7.288 -1.461 0.963 H5 ND6 32 ND6 H6 H6 H 0 1 N N N -32.809 -15.811 -6.210 8.360 -0.456 1.968 H6 ND6 33 ND6 H7 H7 H 0 1 N N N -31.975 -14.992 -8.025 5.984 -1.280 -0.830 H7 ND6 34 ND6 H8 H8 H 0 1 N N N -32.246 -13.664 -10.080 3.681 -1.559 -1.655 H8 ND6 35 ND6 H9 H9 H 0 1 N N N -31.826 -11.450 -11.165 1.062 0.980 -1.239 H9 ND6 36 ND6 H10 H10 H 0 1 N N N -31.957 -9.953 -10.180 1.557 -0.482 -2.125 H10 ND6 37 ND6 H11 H11 H 0 1 N N N -36.099 -10.285 -11.680 -0.744 -2.126 1.418 H11 ND6 38 ND6 H12 H12 H 0 1 N N N -35.613 -11.058 -13.227 -1.543 -2.924 0.040 H12 ND6 39 ND6 H13 H13 H 0 1 N N N -35.493 -8.102 -12.509 -3.258 -1.875 1.439 H13 ND6 40 ND6 H14 H14 H 0 1 N N N -36.564 -8.895 -13.714 -2.391 -0.320 1.396 H14 ND6 41 ND6 H15 H15 H 0 1 N N N -33.400 -6.999 -18.371 -7.473 -1.048 1.426 H15 ND6 42 ND6 H16 H16 H 0 1 N N N -32.746 -8.188 -16.201 -5.233 -2.060 0.998 H16 ND6 43 ND6 H17 H17 H 0 1 N N N -32.496 -9.122 -14.720 -2.286 0.944 -0.632 H17 ND6 44 ND6 H18 H18 H 0 1 N N N -32.790 -8.036 -13.320 -3.074 0.338 -2.108 H18 ND6 45 ND6 H19 H19 H 0 1 N N N -32.800 -11.017 -13.503 -1.425 -1.460 -2.307 H19 ND6 46 ND6 H20 H20 H 0 1 N N N -32.096 -9.926 -12.261 -0.560 0.091 -2.137 H20 ND6 47 ND6 H21 H21 H 0 1 N N N -32.206 -10.050 -7.833 2.494 1.944 0.468 H21 ND6 48 ND6 H22 H22 H 0 1 N N N -31.975 -11.361 -5.775 4.797 2.222 1.295 H22 ND6 49 ND6 H23 H23 H 0 1 N N N -28.519 -13.912 -5.252 9.870 1.217 -0.608 H23 ND6 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ND6 N19 C18 TRIP N N 1 ND6 C18 C17 SING N N 2 ND6 C17 C20 DOUB Y N 3 ND6 C17 N16 SING Y N 4 ND6 C20 C21 SING Y N 5 ND6 N16 N15 DOUB Y N 6 ND6 C21 C14 DOUB Y N 7 ND6 N15 C14 SING Y N 8 ND6 C14 N13 SING N N 9 ND6 N13 C22 SING N N 10 ND6 N13 C12 SING N N 11 ND6 C22 C23 SING N N 12 ND6 C12 C11 SING N N 13 ND6 C23 N10 SING N N 14 ND6 C11 N10 SING N N 15 ND6 N10 C09 SING N N 16 ND6 C09 C08 SING N N 17 ND6 C09 O24 DOUB N N 18 ND6 C08 C07 SING N N 19 ND6 C06 C07 DOUB Y N 20 ND6 C06 C05 SING Y N 21 ND6 C07 C25 SING Y N 22 ND6 C05 C04 DOUB Y N 23 ND6 C25 C26 DOUB Y N 24 ND6 C04 C26 SING Y N 25 ND6 C04 C02 SING N N 26 ND6 C02 C03 SING N N 27 ND6 C02 C01 SING N N 28 ND6 O04 C01 SING N N 29 ND6 C01 H1 SING N N 30 ND6 C01 H2 SING N N 31 ND6 C02 H3 SING N N 32 ND6 C03 H4 SING N N 33 ND6 C03 H5 SING N N 34 ND6 C03 H6 SING N N 35 ND6 C05 H7 SING N N 36 ND6 C06 H8 SING N N 37 ND6 C08 H9 SING N N 38 ND6 C08 H10 SING N N 39 ND6 C11 H11 SING N N 40 ND6 C11 H12 SING N N 41 ND6 C12 H13 SING N N 42 ND6 C12 H14 SING N N 43 ND6 C20 H15 SING N N 44 ND6 C21 H16 SING N N 45 ND6 C22 H17 SING N N 46 ND6 C22 H18 SING N N 47 ND6 C23 H19 SING N N 48 ND6 C23 H20 SING N N 49 ND6 C25 H21 SING N N 50 ND6 C26 H22 SING N N 51 ND6 O04 H23 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ND6 SMILES ACDLabs 12.01 "O=C(Cc1ccc(cc1)C(C)CO)N1CCN(CC1)c1ccc(C#N)nn1" ND6 InChI InChI 1.03 "InChI=1S/C20H23N5O2/c1-15(14-26)17-4-2-16(3-5-17)12-20(27)25-10-8-24(9-11-25)19-7-6-18(13-21)22-23-19/h2-7,15,26H,8-12,14H2,1H3/t15-/m0/s1" ND6 InChIKey InChI 1.03 YTRLPBJDLDKLMQ-HNNXBMFYSA-N ND6 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](CO)c1ccc(CC(=O)N2CCN(CC2)c3ccc(nn3)C#N)cc1" ND6 SMILES CACTVS 3.385 "C[CH](CO)c1ccc(CC(=O)N2CCN(CC2)c3ccc(nn3)C#N)cc1" ND6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](CO)c1ccc(cc1)CC(=O)N2CCN(CC2)c3ccc(nn3)C#N" ND6 SMILES "OpenEye OEToolkits" 2.0.7 "CC(CO)c1ccc(cc1)CC(=O)N2CCN(CC2)c3ccc(nn3)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ND6 "SYSTEMATIC NAME" ACDLabs 12.01 "6-[4-({4-[(2R)-1-hydroxypropan-2-yl]phenyl}acetyl)piperazin-1-yl]pyridazine-3-carbonitrile" ND6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[4-[2-[4-[(2~{R})-1-oxidanylpropan-2-yl]phenyl]ethanoyl]piperazin-1-yl]pyridazine-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ND6 "Create component" 2022-03-31 RCSB ND6 "Initial release" 2023-03-29 RCSB #