data_ND9 # _chem_comp.id ND9 _chem_comp.name "N-[[1-(4-azanyl-1-phenoxy-cyclohexyl)carbonylpiperidin-4-yl]methyl]-2-chloranyl-ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 Cl N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-17 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 407.934 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ND9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ARG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ND9 C15 C1 C 0 1 N N N -19.289 -24.300 -1.314 3.069 0.205 -0.833 C15 ND9 1 ND9 C12 C2 C 0 1 N N N -15.893 -22.505 -1.791 -0.031 1.689 0.904 C12 ND9 2 ND9 C11 C3 C 0 1 N N N -15.718 -20.520 -0.335 -2.213 0.691 0.423 C11 ND9 3 ND9 C10 C4 C 0 1 Y N N -17.125 -21.264 2.140 -1.839 -1.924 0.887 C10 ND9 4 ND9 C13 C5 C 0 1 N N N -16.860 -23.614 -1.435 1.292 0.928 0.768 C13 ND9 5 ND9 C14 C6 C 0 1 N N N -18.288 -23.302 -1.883 1.731 0.935 -0.698 C14 ND9 6 ND9 C9 C7 C 0 1 Y N N -17.508 -22.282 3.010 -1.220 -2.910 1.631 C9 ND9 7 ND9 C6 C8 C 0 1 Y N N -19.392 -20.446 2.114 -1.199 -3.053 -1.133 C6 ND9 8 ND9 C7 C9 C 0 1 Y N N -19.760 -21.486 2.963 -0.573 -4.031 -0.385 C7 ND9 9 ND9 C8 C10 C 0 1 Y N N -18.837 -22.422 3.365 -0.588 -3.963 0.996 C8 ND9 10 ND9 C3 C11 C 0 1 N N N -15.334 -18.711 1.363 -4.282 -0.671 0.298 C3 ND9 11 ND9 C2 C12 C 0 1 N N N -13.987 -18.174 0.877 -5.045 0.408 1.069 C2 ND9 12 ND9 C1 C13 C 0 1 N N N -14.194 -17.103 -0.175 -5.641 1.414 0.083 C1 ND9 13 ND9 C4 C14 C 0 1 N N N -16.296 -19.205 0.270 -3.158 -0.021 -0.511 C4 ND9 14 ND9 C5 C15 C 0 1 Y N N -18.062 -20.321 1.740 -1.829 -1.993 -0.498 C5 ND9 15 ND9 N1 N1 N 0 1 N N N -12.866 -16.625 -0.643 -6.374 2.450 0.824 N1 ND9 16 ND9 O1 O1 O 0 1 N N N -17.667 -19.301 0.893 -2.445 -1.029 -1.232 O1 ND9 17 ND9 O2 O2 O 0 1 N N N -14.617 -20.955 0.035 -2.536 0.891 1.575 O2 ND9 18 ND9 N2 N2 N 0 1 N N N -16.390 -21.229 -1.254 -1.010 1.104 -0.022 N2 ND9 19 ND9 N3 N3 N 0 1 N N N -20.556 -24.443 -2.046 4.106 0.949 -0.113 N3 ND9 20 ND9 C16 C16 C 0 1 N N N -20.804 -25.533 -2.761 5.373 0.492 -0.094 C16 ND9 21 ND9 O3 O3 O 0 1 N N N -19.944 -26.483 -2.832 5.656 -0.536 -0.672 O3 ND9 22 ND9 C17 C17 C 0 1 N N N -22.125 -25.587 -3.508 6.439 1.257 0.647 C17 ND9 23 ND9 C18 C18 C 0 1 N N N -18.698 -21.900 -1.436 0.676 0.227 -1.551 C18 ND9 24 ND9 C19 C19 C 0 1 N N N -17.681 -20.869 -1.851 -0.653 0.980 -1.441 C19 ND9 25 ND9 C20 C20 C 0 1 N N N -16.389 -18.163 -0.860 -3.755 0.985 -1.497 C20 ND9 26 ND9 C21 C21 C 0 1 N N N -15.031 -17.635 -1.330 -4.517 2.064 -0.726 C21 ND9 27 ND9 H1 H1 H 0 1 N N N -19.529 -23.985 -0.288 2.981 -0.796 -0.411 H1 ND9 28 ND9 H2 H2 H 0 1 N N N -18.802 -25.286 -1.291 3.339 0.133 -1.886 H2 ND9 29 ND9 H3 H3 H 0 1 N N N -14.906 -22.726 -1.357 -0.398 1.603 1.927 H3 ND9 30 ND9 H4 H4 H 0 1 N N N -15.805 -22.433 -2.885 0.125 2.739 0.657 H4 ND9 31 ND9 H5 H5 H 0 1 N N N -16.108 -21.209 1.780 -2.333 -1.102 1.384 H5 ND9 32 ND9 H6 H6 H 0 1 N N N -16.854 -23.753 -0.344 2.055 1.411 1.378 H6 ND9 33 ND9 H7 H7 H 0 1 N N N -16.530 -24.542 -1.925 1.156 -0.101 1.103 H7 ND9 34 ND9 H8 H8 H 0 1 N N N -18.330 -23.348 -2.981 1.843 1.964 -1.039 H8 ND9 35 ND9 H9 H9 H 0 1 N N N -16.768 -22.961 3.407 -1.231 -2.859 2.710 H9 ND9 36 ND9 H10 H10 H 0 1 N N N -20.131 -19.747 1.752 -1.186 -3.107 -2.212 H10 ND9 37 ND9 H11 H11 H 0 1 N N N -20.780 -21.558 3.309 -0.072 -4.850 -0.879 H11 ND9 38 ND9 H12 H12 H 0 1 N N N -19.150 -23.268 3.959 -0.105 -4.733 1.579 H12 ND9 39 ND9 H13 H13 H 0 1 N N N -15.838 -17.905 1.916 -3.857 -1.388 1.000 H13 ND9 40 ND9 H14 H14 H 0 1 N N N -15.135 -19.553 2.042 -4.965 -1.186 -0.378 H14 ND9 41 ND9 H15 H15 H 0 1 N N N -13.403 -18.999 0.444 -5.846 -0.055 1.646 H15 ND9 42 ND9 H16 H16 H 0 1 N N N -13.439 -17.744 1.729 -4.361 0.923 1.745 H16 ND9 43 ND9 H17 H17 H 0 1 N N N -14.733 -16.262 0.285 -6.325 0.899 -0.592 H17 ND9 44 ND9 H18 H18 H 0 1 N N N -12.341 -16.283 0.136 -6.778 3.128 0.194 H18 ND9 45 ND9 H19 H19 H 0 1 N N N -12.372 -17.381 -1.071 -7.080 2.040 1.416 H19 ND9 46 ND9 H21 H21 H 0 1 N N N -21.237 -23.712 -2.005 3.880 1.771 0.350 H21 ND9 47 ND9 H22 H22 H 0 1 N N N -22.184 -24.745 -4.213 6.527 2.258 0.225 H22 ND9 48 ND9 H23 H23 H 0 1 N N N -22.196 -26.535 -4.062 6.169 1.329 1.701 H23 ND9 49 ND9 CL1 CL1 CL 0 0 N Y N -22.929 -25.522 -2.805 8.016 0.397 0.488 CL1 ND9 50 ND9 H25 H25 H 0 1 N N N -19.668 -21.649 -1.891 1.000 0.211 -2.592 H25 ND9 51 ND9 H26 H26 H 0 1 N N N -18.793 -21.888 -0.340 0.547 -0.795 -1.196 H26 ND9 52 ND9 H27 H27 H 0 1 N N N -17.593 -20.854 -2.947 -1.431 0.426 -1.967 H27 ND9 53 ND9 H28 H28 H 0 1 N N N -17.992 -19.876 -1.495 -0.549 1.972 -1.880 H28 ND9 54 ND9 H29 H29 H 0 1 N N N -16.985 -17.312 -0.498 -2.954 1.448 -2.073 H29 ND9 55 ND9 H30 H30 H 0 1 N N N -16.896 -18.627 -1.719 -4.438 0.470 -2.173 H30 ND9 56 ND9 H31 H31 H 0 1 N N N -14.482 -18.453 -1.819 -4.942 2.781 -1.428 H31 ND9 57 ND9 H32 H32 H 0 1 N N N -15.197 -16.822 -2.052 -3.834 2.579 -0.050 H32 ND9 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ND9 C17 C16 SING N N 1 ND9 O3 C16 DOUB N N 2 ND9 C16 N3 SING N N 3 ND9 N3 C15 SING N N 4 ND9 C14 C18 SING N N 5 ND9 C14 C13 SING N N 6 ND9 C14 C15 SING N N 7 ND9 C19 C18 SING N N 8 ND9 C19 N2 SING N N 9 ND9 C12 C13 SING N N 10 ND9 C12 N2 SING N N 11 ND9 C21 C20 SING N N 12 ND9 C21 C1 SING N N 13 ND9 N2 C11 SING N N 14 ND9 C20 C4 SING N N 15 ND9 N1 C1 SING N N 16 ND9 C11 O2 DOUB N N 17 ND9 C11 C4 SING N N 18 ND9 C1 C2 SING N N 19 ND9 C4 O1 SING N N 20 ND9 C4 C3 SING N N 21 ND9 C2 C3 SING N N 22 ND9 O1 C5 SING N N 23 ND9 C5 C6 DOUB Y N 24 ND9 C5 C10 SING Y N 25 ND9 C6 C7 SING Y N 26 ND9 C10 C9 DOUB Y N 27 ND9 C7 C8 DOUB Y N 28 ND9 C9 C8 SING Y N 29 ND9 C15 H1 SING N N 30 ND9 C15 H2 SING N N 31 ND9 C12 H3 SING N N 32 ND9 C12 H4 SING N N 33 ND9 C10 H5 SING N N 34 ND9 C13 H6 SING N N 35 ND9 C13 H7 SING N N 36 ND9 C14 H8 SING N N 37 ND9 C9 H9 SING N N 38 ND9 C6 H10 SING N N 39 ND9 C7 H11 SING N N 40 ND9 C8 H12 SING N N 41 ND9 C3 H13 SING N N 42 ND9 C3 H14 SING N N 43 ND9 C2 H15 SING N N 44 ND9 C2 H16 SING N N 45 ND9 C1 H17 SING N N 46 ND9 N1 H18 SING N N 47 ND9 N1 H19 SING N N 48 ND9 N3 H21 SING N N 49 ND9 C17 H22 SING N N 50 ND9 C17 H23 SING N N 51 ND9 C17 CL1 SING N N 52 ND9 C18 H25 SING N N 53 ND9 C18 H26 SING N N 54 ND9 C19 H27 SING N N 55 ND9 C19 H28 SING N N 56 ND9 C20 H29 SING N N 57 ND9 C20 H30 SING N N 58 ND9 C21 H31 SING N N 59 ND9 C21 H32 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ND9 InChI InChI 1.06 "InChI=1S/C21H30ClN3O3/c22-14-19(26)24-15-16-8-12-25(13-9-16)20(27)21(10-6-17(23)7-11-21)28-18-4-2-1-3-5-18/h1-5,16-17H,6-15,23H2,(H,24,26)/t17-,21-" ND9 InChIKey InChI 1.06 KYZPVSMGBRSVOQ-CYWCHRQTSA-N ND9 SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1CC[C@](CC1)(Oc2ccccc2)C(=O)N3CC[C@H](CC3)CNC(=O)CCl" ND9 SMILES CACTVS 3.385 "N[CH]1CC[C](CC1)(Oc2ccccc2)C(=O)N3CC[CH](CC3)CNC(=O)CCl" ND9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)OC2(CCC(CC2)N)C(=O)N3CCC(CC3)CNC(=O)CCl" ND9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)OC2(CCC(CC2)N)C(=O)N3CCC(CC3)CNC(=O)CCl" # _pdbx_chem_comp_identifier.comp_id ND9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[1-(4-azanyl-1-phenoxy-cyclohexyl)carbonylpiperidin-4-yl]methyl]-2-chloranyl-ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ND9 "Create component" 2022-08-17 PDBE ND9 "Initial release" 2023-09-20 RCSB ND9 "Modify descriptor" 2023-09-23 RCSB #