data_NDC # _chem_comp.id NDC _chem_comp.name "NICOTINAMIDE ADENINE DINUCLEOTIDE CYCLOHEXANONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H35 N7 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2012-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 759.552 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NDC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1B2L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NDC PA PA P 0 1 N N S -2.554 49.409 47.412 -2.006 0.635 2.197 PA NDC 1 NDC O1A O1A O 0 1 N N N -1.616 50.398 46.783 -2.695 0.083 3.385 O1A NDC 2 NDC O2A O2A O 0 1 N N N -2.765 49.548 48.949 -1.124 1.910 2.632 O2A NDC 3 NDC "O5'" "O5'" O 0 1 N N N -2.130 47.926 47.115 -3.098 1.086 1.104 "O5'" NDC 4 NDC "C5'" "C5'" C 0 1 N N N -1.382 47.611 45.842 -4.160 1.997 1.395 "C5'" NDC 5 NDC "C4'" "C4'" C 0 1 N N R -0.982 46.200 45.998 -5.010 2.207 0.140 "C4'" NDC 6 NDC "O4'" "O4'" O 0 1 N N N -0.349 45.830 44.710 -5.686 0.986 -0.202 "O4'" NDC 7 NDC "C3'" "C3'" C 0 1 N N S 0.161 46.050 47.057 -6.094 3.269 0.413 "C3'" NDC 8 NDC "O3'" "O3'" O 0 1 N N N 0.067 44.667 47.578 -5.942 4.378 -0.475 "O3'" NDC 9 NDC "C2'" "C2'" C 0 1 N N R 1.441 46.217 46.294 -7.426 2.531 0.137 "C2'" NDC 10 NDC "O2'" "O2'" O 0 1 N N N 2.622 45.749 46.833 -8.342 3.377 -0.561 "O2'" NDC 11 NDC "C1'" "C1'" C 0 1 N N R 0.929 45.508 44.967 -6.966 1.354 -0.760 "C1'" NDC 12 NDC N9A N9A N 0 1 Y N N 1.829 45.791 43.897 -7.909 0.237 -0.670 N9A NDC 13 NDC C8A C8A C 0 1 Y N N 2.068 46.983 43.234 -7.850 -0.799 0.214 C8A NDC 14 NDC N7A N7A N 0 1 Y N N 2.979 46.881 42.276 -8.846 -1.612 0.014 N7A NDC 15 NDC C5A C5A C 0 1 Y N N 3.389 45.581 42.260 -9.606 -1.150 -1.008 C5A NDC 16 NDC C6A C6A C 0 1 Y N N 4.388 44.851 41.430 -10.775 -1.594 -1.650 C6A NDC 17 NDC N6A N6A N 0 1 N N N 5.092 45.431 40.484 -11.403 -2.761 -1.250 N6A NDC 18 NDC N1A N1A N 0 1 Y N N 4.526 43.501 41.747 -11.263 -0.869 -2.651 N1A NDC 19 NDC C2A C2A C 0 1 Y N N 3.823 42.864 42.682 -10.671 0.246 -3.039 C2A NDC 20 NDC N3A N3A N 0 1 Y N N 2.887 43.518 43.499 -9.575 0.700 -2.468 N3A NDC 21 NDC C4A C4A C 0 1 Y N N 2.679 44.901 43.249 -9.018 0.045 -1.455 C4A NDC 22 NDC OPP OPP O 0 1 N N N -3.943 49.525 46.693 -1.045 -0.491 1.562 OPP NDC 23 NDC PN PN P 0 1 N N N -5.368 48.781 46.818 -0.070 -1.610 2.186 PN NDC 24 NDC O1N O1N O 0 1 N N N -6.385 49.828 46.817 0.678 -1.021 3.402 O1N NDC 25 NDC O2N O2N O -1 1 N N N -5.305 47.794 47.932 -0.906 -2.829 2.636 O2N NDC 26 NDC O5B O5* O 0 1 N N N -5.492 48.019 45.423 0.996 -2.073 1.072 O5B NDC 27 NDC C5B C5* C 0 1 N N N -5.506 46.560 45.292 2.065 -2.981 1.348 C5B NDC 28 NDC C4B C4* C 0 1 N N R -6.006 46.255 43.900 2.885 -3.204 0.076 C4B NDC 29 NDC O4B O4* O 0 1 N N N -7.393 46.794 43.808 3.553 -1.987 -0.295 O4B NDC 30 NDC C3B C3* C 0 1 N N S -5.248 47.044 42.754 3.975 -4.263 0.335 C3B NDC 31 NDC O3B O3* O 0 1 N N N -5.291 46.272 41.589 3.803 -5.381 -0.539 O3B NDC 32 NDC C2B C2* C 0 1 N N R -6.121 48.293 42.586 5.300 -3.529 0.020 C2B NDC 33 NDC O2B O2* O 0 1 N N N -5.883 48.882 41.335 6.200 -4.382 -0.691 O2B NDC 34 NDC C1B C1* C 0 1 N N R -7.508 47.730 42.733 4.819 -2.361 -0.879 C1B NDC 35 NDC N1N N1N N 1 1 Y N N -8.518 48.584 42.971 5.764 -1.243 -0.823 N1N NDC 36 NDC C2N C2N C 0 1 Y N N -8.615 49.345 44.139 6.573 -1.037 -1.841 C2N NDC 37 NDC C3N C3N C 0 1 Y N N -9.586 50.288 44.291 7.485 0.018 -1.821 C3N NDC 38 NDC C7N C7N C 0 1 N N N -9.842 51.010 45.558 8.393 0.249 -2.964 C7N NDC 39 NDC O7N O7N O 0 1 N N N -10.821 51.779 45.690 9.531 0.630 -2.770 O7N NDC 40 NDC N7N N7N N 0 1 N N N -8.988 50.843 46.631 7.960 0.037 -4.223 N7N NDC 41 NDC C4N C4N C 0 1 Y N N -10.485 50.672 43.134 7.527 0.855 -0.699 C4N NDC 42 NDC C5N C5N C 0 1 Y N N -10.687 49.441 42.313 6.655 0.596 0.345 C5N NDC 43 NDC C6N C6N C 0 1 Y N N -9.704 48.508 42.192 5.777 -0.468 0.245 C6N NDC 44 NDC CC1 CC1 C 0 1 N N N -10.899 52.437 41.353 7.742 3.287 -0.338 CC1 NDC 45 NDC OC1 OC1 O 0 1 N N N -11.741 51.717 40.801 6.535 3.313 -0.356 OC1 NDC 46 NDC CC2 CC2 C 0 1 N N N -10.481 53.705 40.660 8.540 4.531 -0.017 CC2 NDC 47 NDC CC3 CC3 C 0 1 N N N -9.626 54.663 41.435 9.545 4.193 1.090 CC3 NDC 48 NDC CC4 CC4 C 0 1 N N N -8.679 54.018 42.417 10.392 2.995 0.659 CC4 NDC 49 NDC CC5 CC5 C 0 1 N N N -9.398 52.949 43.213 9.502 1.763 0.494 CC5 NDC 50 NDC CC6 CC6 C 0 1 N N S -9.879 51.818 42.298 8.495 2.007 -0.629 CC6 NDC 51 NDC HOA2 2HOA H 0 0 N N N -3.358 48.922 49.347 -0.643 2.323 1.902 HOA2 NDC 52 NDC "H5'1" "1H5'" H 0 0 N N N -1.955 47.823 44.909 -4.782 1.587 2.191 "H5'1" NDC 53 NDC "H5'2" "2H5'" H 0 0 N N N -0.536 48.304 45.624 -3.743 2.952 1.715 "H5'2" NDC 54 NDC "H4'" "H4'" H 0 1 N N N -1.866 45.589 46.295 -4.377 2.525 -0.687 "H4'" NDC 55 NDC "H3'" "H3'" H 0 1 N N N 0.100 46.781 47.896 -6.048 3.603 1.450 "H3'" NDC 56 NDC "HO'3" "3HO'" H 0 0 N N N 0.760 44.576 48.220 -6.598 5.076 -0.348 "HO'3" NDC 57 NDC "H2'" "H2'" H 0 1 N N N 1.814 47.264 46.218 -7.867 2.165 1.064 "H2'" NDC 58 NDC "HO'2" "2HO'" H 0 0 N N N 3.432 45.854 46.349 -8.590 4.175 -0.075 "HO'2" NDC 59 NDC "H1'" "H1'" H 0 1 N N N 0.927 44.401 45.100 -6.854 1.681 -1.794 "H1'" NDC 60 NDC H8A H8A H 0 1 N N N 1.569 47.942 43.452 -7.088 -0.927 0.968 H8A NDC 61 NDC H6A1 1H6A H 0 0 N N N 5.775 44.931 39.915 -11.037 -3.282 -0.518 H6A1 NDC 62 NDC H6A2 2H6A H 0 0 N N N 5.568 46.229 40.903 -12.209 -3.057 -1.701 H6A2 NDC 63 NDC H2A H2A H 0 1 N N N 4.018 41.782 42.780 -11.101 0.806 -3.856 H2A NDC 64 NDC H5A1 1H5* H 0 0 N N N -4.521 46.088 45.519 2.705 -2.563 2.125 H5A1 NDC 65 NDC H5A2 2H5* H 0 0 N N N -6.093 46.051 46.092 1.655 -3.932 1.688 H5A2 NDC 66 NDC H4B H4* H 0 1 N N N -5.880 45.156 43.758 2.233 -3.531 -0.733 H4B NDC 67 NDC H3B H3* H 0 1 N N N -4.179 47.277 42.971 3.953 -4.586 1.375 H3B NDC 68 NDC HOA3 3HO* H 0 0 N N N -4.836 46.745 40.901 4.462 -6.079 -0.419 HOA3 NDC 69 NDC H2B H2* H 0 1 N N N -5.925 49.113 43.315 5.763 -3.152 0.932 H2B NDC 70 NDC HOB2 2HO* H 0 0 N N N -6.424 49.656 41.230 6.459 -5.175 -0.202 HOB2 NDC 71 NDC H1B H1* H 0 1 N N N -7.806 47.307 41.745 4.683 -2.698 -1.907 H1B NDC 72 NDC H2N H2N H 0 1 N N N -7.902 49.196 44.967 6.530 -1.691 -2.700 H2N NDC 73 NDC H7N1 1H7N H 0 0 N N N -8.190 50.216 46.523 7.052 -0.267 -4.378 H7N1 NDC 74 NDC H7N2 2H7N H 0 0 N N N -9.164 51.340 47.503 8.555 0.189 -4.973 H7N2 NDC 75 NDC H5N H5N H 0 1 N N N -11.615 49.207 41.764 6.659 1.220 1.226 H5N NDC 76 NDC H6N H6N H 0 1 N N N -9.867 47.694 41.465 5.093 -0.670 1.056 H6N NDC 77 NDC HC21 1HC2 H 0 0 N N N -9.975 53.451 39.699 9.074 4.864 -0.907 HC21 NDC 78 NDC HC22 2HC2 H 0 0 N N N -11.386 54.237 40.284 7.869 5.318 0.326 HC22 NDC 79 NDC HC31 1HC3 H 0 0 N N N -9.064 55.329 40.738 10.193 5.052 1.267 HC31 NDC 80 NDC HC32 2HC3 H 0 0 N N N -10.263 55.417 41.952 9.008 3.948 2.006 HC32 NDC 81 NDC HC41 1HC4 H 0 0 N N N -7.766 53.620 41.915 10.880 3.219 -0.290 HC41 NDC 82 NDC HC42 2HC4 H 0 0 N N N -8.188 54.770 43.078 11.150 2.796 1.416 HC42 NDC 83 NDC HC51 1HC5 H 0 0 N N N -8.768 52.563 44.048 10.119 0.898 0.249 HC51 NDC 84 NDC HC52 2HC5 H 0 0 N N N -10.233 53.375 43.815 8.966 1.575 1.424 HC52 NDC 85 NDC HC6 HC6 H 0 1 N N N -9.040 51.367 41.717 9.022 2.101 -1.579 HC6 NDC 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NDC PA O1A DOUB N N 1 NDC PA O2A SING N N 2 NDC PA "O5'" SING N N 3 NDC PA OPP SING N N 4 NDC O2A HOA2 SING N N 5 NDC "O5'" "C5'" SING N N 6 NDC "C5'" "C4'" SING N N 7 NDC "C5'" "H5'1" SING N N 8 NDC "C5'" "H5'2" SING N N 9 NDC "C4'" "O4'" SING N N 10 NDC "C4'" "C3'" SING N N 11 NDC "C4'" "H4'" SING N N 12 NDC "O4'" "C1'" SING N N 13 NDC "C3'" "O3'" SING N N 14 NDC "C3'" "C2'" SING N N 15 NDC "C3'" "H3'" SING N N 16 NDC "O3'" "HO'3" SING N N 17 NDC "C2'" "O2'" SING N N 18 NDC "C2'" "C1'" SING N N 19 NDC "C2'" "H2'" SING N N 20 NDC "O2'" "HO'2" SING N N 21 NDC "C1'" N9A SING N N 22 NDC "C1'" "H1'" SING N N 23 NDC N9A C8A SING Y N 24 NDC N9A C4A SING Y N 25 NDC C8A N7A DOUB Y N 26 NDC C8A H8A SING N N 27 NDC N7A C5A SING Y N 28 NDC C5A C6A SING Y N 29 NDC C5A C4A DOUB Y N 30 NDC C6A N6A SING N N 31 NDC C6A N1A DOUB Y N 32 NDC N6A H6A1 SING N N 33 NDC N6A H6A2 SING N N 34 NDC N1A C2A SING Y N 35 NDC C2A N3A DOUB Y N 36 NDC C2A H2A SING N N 37 NDC N3A C4A SING Y N 38 NDC OPP PN SING N N 39 NDC PN O1N DOUB N N 40 NDC PN O2N SING N N 41 NDC PN O5B SING N N 42 NDC O5B C5B SING N N 43 NDC C5B C4B SING N N 44 NDC C5B H5A1 SING N N 45 NDC C5B H5A2 SING N N 46 NDC C4B O4B SING N N 47 NDC C4B C3B SING N N 48 NDC C4B H4B SING N N 49 NDC O4B C1B SING N N 50 NDC C3B O3B SING N N 51 NDC C3B C2B SING N N 52 NDC C3B H3B SING N N 53 NDC O3B HOA3 SING N N 54 NDC C2B O2B SING N N 55 NDC C2B C1B SING N N 56 NDC C2B H2B SING N N 57 NDC O2B HOB2 SING N N 58 NDC C1B N1N SING N N 59 NDC C1B H1B SING N N 60 NDC N1N C2N SING Y N 61 NDC N1N C6N DOUB Y N 62 NDC C2N C3N DOUB Y N 63 NDC C2N H2N SING N N 64 NDC C3N C7N SING N N 65 NDC C3N C4N SING Y N 66 NDC C7N O7N DOUB N N 67 NDC C7N N7N SING N N 68 NDC N7N H7N1 SING N N 69 NDC N7N H7N2 SING N N 70 NDC C4N C5N DOUB Y N 71 NDC C4N CC6 SING N N 72 NDC C5N C6N SING Y N 73 NDC C5N H5N SING N N 74 NDC C6N H6N SING N N 75 NDC CC1 OC1 DOUB N N 76 NDC CC1 CC2 SING N N 77 NDC CC1 CC6 SING N N 78 NDC CC2 CC3 SING N N 79 NDC CC2 HC21 SING N N 80 NDC CC2 HC22 SING N N 81 NDC CC3 CC4 SING N N 82 NDC CC3 HC31 SING N N 83 NDC CC3 HC32 SING N N 84 NDC CC4 CC5 SING N N 85 NDC CC4 HC41 SING N N 86 NDC CC4 HC42 SING N N 87 NDC CC5 CC6 SING N N 88 NDC CC5 HC51 SING N N 89 NDC CC5 HC52 SING N N 90 NDC CC6 HC6 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NDC InChI InChI 1.03 ;InChI=1S/C27H35N7O15P2/c28-23-18-25(31-10-30-23)34(11-32-18)27-22(39)20(37)17(48-27)9-46-51(43,44)49-50(41,42)45-8-16-19(36)21(38)26(47-16)33-6-5-12(14(7-33)24(29)40)13-3-1-2-4-15(13)35/h5-7,10-11,13,16-17,19-22,26-27,36-39H,1-4,8-9H2,(H5-,28,29,30,31,40,41,42,43,44)/t13-,16+,17+,19+,20+,21+,22+,26+,27+/m0/s1 ; NDC InChIKey InChI 1.03 HTFHWJHTWKCYLR-RINXRSLZSA-N NDC SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1c[n+](ccc1[C@@H]2CCCCC2=O)[C@@H]3O[C@H](CO[P]([O-])(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O" NDC SMILES CACTVS 3.385 "NC(=O)c1c[n+](ccc1[CH]2CCCCC2=O)[CH]3O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O" NDC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "c1c[n+](cc(c1[C@@H]2CCCCC2=O)C(=O)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)([O-])O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O" NDC SMILES "OpenEye OEToolkits" 1.7.5 "c1c[n+](cc(c1C2CCCCC2=O)C(=O)N)C3C(C(C(O3)COP(=O)([O-])OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NDC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-[3-aminocarbonyl-4-[(1S)-2-oxocyclohexyl]pyridin-1-ium-1-yl]-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NDC "Create component" 1999-07-08 RCSB NDC "Modify descriptor" 2011-06-04 RCSB NDC "Modify descriptor" 2012-01-05 RCSB NDC "Modify coordinates" 2012-01-05 RCSB #