data_NDG # _chem_comp.id NDG _chem_comp.name 2-acetamido-2-deoxy-alpha-D-glucopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H15 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;N-acetyl-alpha-D-glucosamine; 2-acetamido-2-deoxy-alpha-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-07-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 221.208 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NDG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1H15 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 NDG N-acetyl-alpha-D-glucosamine PDB ? 2 NDG 2-acetamido-2-deoxy-alpha-D-glucose PDB ? 3 NDG 2-acetamido-2-deoxy-D-glucose PDB ? 4 NDG 2-acetamido-2-deoxy-glucose PDB ? 5 NDG "2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE" PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NDG C1 C1 C 0 1 N N S N N N 72.354 19.046 10.329 -0.207 1.202 0.140 C1 NDG 1 NDG C2 C2 C 0 1 N N R N N N 72.696 20.147 11.366 -0.859 -0.132 -0.234 C2 NDG 2 NDG C3 C3 C 0 1 N N R N N N 72.987 19.557 12.755 0.010 -1.280 0.290 C3 NDG 3 NDG C4 C4 C 0 1 N N S N N N 72.260 18.220 12.969 1.422 -1.141 -0.287 C4 NDG 4 NDG C5 C5 C 0 1 N N R N N N 70.961 18.152 12.153 1.986 0.231 0.088 C5 NDG 5 NDG C6 C6 C 0 1 N N N N N N 69.953 19.240 12.490 3.372 0.401 -0.535 C6 NDG 6 NDG C7 C7 C 0 1 N N N N N N 74.312 21.932 11.648 -3.250 0.333 -0.261 C7 NDG 7 NDG C8 C8 C 0 1 N N N N N N 75.538 21.656 12.509 -4.621 0.252 0.360 C8 NDG 8 NDG O5 O O 0 1 N N N N N N 71.223 18.223 10.721 1.115 1.253 -0.402 O5 NDG 9 NDG O3 O3 O 0 1 N N N N N N 72.578 20.483 13.754 -0.553 -2.529 -0.117 O3 NDG 10 NDG O4 O4 O 0 1 N N N N N N 73.111 17.141 12.603 2.260 -2.165 0.252 O4 NDG 11 NDG O6 O6 O 0 1 N N N N N N 68.632 18.836 12.161 3.947 1.632 -0.090 O6 NDG 12 NDG O7 O7 O 0 1 N N N N N N 73.803 23.055 11.651 -3.100 0.890 -1.328 O7 NDG 13 NDG N2 N2 N 0 1 N N N N N N 73.839 20.926 10.913 -2.191 -0.212 0.370 N2 NDG 14 NDG O1 O1L O 0 1 N Y N N N N 73.449 18.223 10.087 -0.144 1.320 1.562 O1 NDG 15 NDG H1 H1 H 0 1 N N N N N N 72.079 19.585 9.410 -0.799 2.022 -0.268 H1 NDG 16 NDG H2 H2 H 0 1 N N N N N N 71.815 20.800 11.455 -0.944 -0.205 -1.318 H2 NDG 17 NDG H3 H3 H 0 1 N N N N N N 74.069 19.369 12.826 0.054 -1.236 1.378 H3 NDG 18 NDG H4 H4 H 0 1 N N N N N N 72.001 18.143 14.035 1.383 -1.235 -1.372 H4 NDG 19 NDG H5 H5 H 0 1 N N N N N N 70.525 17.181 12.429 2.062 0.309 1.173 H5 NDG 20 NDG H61 H6C1 H 0 1 N N N N N N 70.003 19.450 13.569 4.011 -0.428 -0.231 H61 NDG 21 NDG H62 H6C2 H 0 1 N N N N N N 70.200 20.138 11.904 3.284 0.413 -1.621 H62 NDG 22 NDG H81 H8C1 H 0 1 N N N N N N 76.429 21.589 11.868 -5.119 -0.657 0.022 H81 NDG 23 NDG H82 H8C2 H 0 1 N N N N N N 75.668 22.473 13.234 -4.528 0.233 1.446 H82 NDG 24 NDG H83 H8C3 H 0 1 N N N N N N 75.402 20.706 13.047 -5.208 1.120 0.061 H83 NDG 25 NDG HO3 HB H 0 1 N Y N N N N 72.487 20.033 14.586 -0.052 -3.301 0.181 HO3 NDG 26 NDG HO4 HC H 0 1 N Y N N N N 73.301 17.188 11.673 3.172 -2.138 -0.071 HO4 NDG 27 NDG HO6 H6 H 0 1 N Y N N N N 68.121 18.746 12.956 4.829 1.806 -0.447 HO6 NDG 28 NDG HN2 HA H 0 1 N N N N N N 74.274 20.704 10.041 -2.312 -0.657 1.223 HN2 NDG 29 NDG HO1 H1L H 0 1 N Y N N N N 73.505 18.035 9.157 0.258 2.143 1.871 HO1 NDG 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NDG C1 C2 SING N N 1 NDG C1 O5 SING N N 2 NDG C1 O1 SING N N 3 NDG C1 H1 SING N N 4 NDG C2 C3 SING N N 5 NDG C2 N2 SING N N 6 NDG C2 H2 SING N N 7 NDG C3 C4 SING N N 8 NDG C3 O3 SING N N 9 NDG C3 H3 SING N N 10 NDG C4 C5 SING N N 11 NDG C4 O4 SING N N 12 NDG C4 H4 SING N N 13 NDG C5 C6 SING N N 14 NDG C5 O5 SING N N 15 NDG C5 H5 SING N N 16 NDG C6 O6 SING N N 17 NDG C6 H61 SING N N 18 NDG C6 H62 SING N N 19 NDG C7 C8 SING N N 20 NDG C7 O7 DOUB N N 21 NDG C7 N2 SING N N 22 NDG C8 H81 SING N N 23 NDG C8 H82 SING N N 24 NDG C8 H83 SING N N 25 NDG O3 HO3 SING N N 26 NDG O4 HO4 SING N N 27 NDG O6 HO6 SING N N 28 NDG N2 HN2 SING N N 29 NDG O1 HO1 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NDG SMILES ACDLabs 10.04 "O=C(NC1C(O)C(O)C(OC1O)CO)C" NDG SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@H]1[C@@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O" NDG SMILES CACTVS 3.341 "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O" NDG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O)CO)O)O" NDG SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1C(C(C(OC1O)CO)O)O" NDG InChI InChI 1.03 "InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6-,7-,8+/m1/s1" NDG InChIKey InChI 1.03 OVRNDRQMDRJTHS-PVFLNQBWSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NDG "SYSTEMATIC NAME" ACDLabs 10.04 "2-(acetylamino)-2-deoxy-alpha-D-glucopyranose" NDG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(2S,3R,4R,5S,6R)-2,4,5-trihydroxy-6-(hydroxymethyl)oxan-3-yl]ethanamide" NDG "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGlcpNAca NDG "COMMON NAME" GMML 1.0 N-acetyl-a-D-glucopyranosamine NDG "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-GlcpNAc NDG "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 GlcNAc # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support NDG "CARBOHYDRATE ISOMER" D PDB ? NDG "CARBOHYDRATE RING" pyranose PDB ? NDG "CARBOHYDRATE ANOMER" alpha PDB ? NDG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NDG "Create component" 2002-07-02 EBI NDG "Modify descriptor" 2011-06-04 RCSB NDG "Other modification" 2019-08-12 RCSB NDG "Other modification" 2019-12-19 RCSB NDG "Other modification" 2020-07-03 RCSB NDG "Modify name" 2020-07-17 RCSB NDG "Modify synonyms" 2020-07-17 RCSB NDG "Modify atom id" 2020-07-17 RCSB NDG "Modify component atom id" 2020-07-17 RCSB NDG "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 NDG THR O-Glycosylation Carbohydrate "Amino-acid side chain" "Any position" C1 OG1 ? ? 2 NDG TYR O-Glycosylation Carbohydrate "Amino-acid side chain" "Any position" C1 OH ? ? 3 NDG ASN None Carbohydrate "Amino-acid side chain" "Any position" C1 ND2 ? ? #