data_NDJ # _chem_comp.id NDJ _chem_comp.name "(2R,3S,4R,5S)-N-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1-carbothioamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H22 N2 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-07-26 _chem_comp.pdbx_modified_date 2014-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.368 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NDJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WF2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NDJ O2 O2 O 0 1 N N N -2.707 -21.231 4.254 -2.276 3.170 0.644 O2 NDJ 1 NDJ C2 C2 C 0 1 N N S -3.595 -21.165 5.388 -1.947 1.874 0.138 C2 NDJ 2 NDJ C3 C3 C 0 1 N N R -2.764 -21.113 6.695 -3.193 0.985 0.163 C3 NDJ 3 NDJ O3 O3 O 0 1 N N N -2.089 -19.860 6.835 -4.222 1.586 -0.627 O3 NDJ 4 NDJ C1 C1 C 0 1 N N N -4.553 -22.390 5.320 -0.859 1.244 1.013 C1 NDJ 5 NDJ N5 N5 N 0 1 N N N -5.391 -22.312 6.509 -0.626 -0.134 0.560 N5 NDJ 6 NDJ C5 C5 C 0 1 N N R -4.524 -22.628 7.703 -1.772 -1.048 0.460 C5 NDJ 7 NDJ C6 C6 C 0 1 N N N -5.267 -22.816 9.024 -1.325 -2.362 -0.182 C6 NDJ 8 NDJ O6 O6 O 0 1 N N N -4.410 -23.015 10.198 -0.696 -3.184 0.803 O6 NDJ 9 NDJ C4 C4 C 0 1 N N S -3.658 -21.359 7.884 -2.850 -0.392 -0.409 C4 NDJ 10 NDJ O4 O4 O 0 1 N N N -4.560 -20.230 8.072 -2.363 -0.247 -1.745 O4 NDJ 11 NDJ C7 C7 C 0 1 N N N -6.710 -21.842 6.441 0.615 -0.552 0.242 C7 NDJ 12 NDJ N8 N8 N 0 1 N N N -7.172 -20.994 7.412 1.628 0.335 0.172 N8 NDJ 13 NDJ S7 S7 S 0 1 N N N -7.738 -22.198 5.224 0.906 -2.209 -0.072 S7 NDJ 14 NDJ C9 C9 C 0 1 N N N -8.540 -20.473 7.518 2.998 -0.133 -0.047 C9 NDJ 15 NDJ C10 C10 C 0 1 N N N -9.292 -21.081 8.710 3.947 1.066 -0.086 C10 NDJ 16 NDJ C11 C11 C 0 1 N N N -10.693 -20.497 8.905 5.379 0.577 -0.315 C11 NDJ 17 NDJ C12 C12 C 0 1 N N N -11.367 -21.015 10.169 6.328 1.776 -0.354 C12 NDJ 18 NDJ H1 H1 H 0 1 N N N -2.111 -20.491 4.274 -1.531 3.787 0.657 H1 NDJ 19 NDJ H2 H2 H 0 1 N N N -4.203 -20.250 5.330 -1.585 1.964 -0.886 H2 NDJ 20 NDJ H3 H3 H 0 1 N N N -2.020 -21.922 6.651 -3.541 0.876 1.190 H3 NDJ 21 NDJ H4 H4 H 0 1 N N N -1.589 -19.858 7.643 -4.491 2.463 -0.321 H4 NDJ 22 NDJ H5 H5 H 0 1 N N N -5.172 -22.341 4.412 0.062 1.820 0.921 H5 NDJ 23 NDJ H6 H6 H 0 1 N N N -3.976 -23.327 5.320 -1.185 1.237 2.053 H6 NDJ 24 NDJ H7 H7 H 0 1 N N N -3.882 -23.498 7.497 -2.173 -1.242 1.455 H7 NDJ 25 NDJ H8 H8 H 0 1 N N N -5.882 -21.921 9.199 -2.193 -2.882 -0.588 H8 NDJ 26 NDJ H9 H9 H 0 1 N N N -5.920 -23.696 8.926 -0.619 -2.153 -0.985 H9 NDJ 27 NDJ H10 H10 H 0 1 N N N -4.951 -23.123 10.971 -0.388 -4.037 0.467 H10 NDJ 28 NDJ H11 H11 H 0 1 N N N -3.034 -21.488 8.781 -3.744 -1.017 -0.413 H11 NDJ 29 NDJ H12 H12 H 0 1 N N N -5.119 -20.393 8.822 -2.995 0.164 -2.351 H12 NDJ 30 NDJ H13 H13 H 0 1 N N N -6.519 -20.704 8.111 1.449 1.284 0.267 H13 NDJ 31 NDJ H14 H14 H 0 1 N N N -8.496 -19.381 7.644 3.288 -0.800 0.765 H14 NDJ 32 NDJ H15 H15 H 0 1 N N N -9.085 -20.714 6.593 3.052 -0.670 -0.995 H15 NDJ 33 NDJ H16 H16 H 0 1 N N N -9.385 -22.165 8.548 3.657 1.733 -0.898 H16 NDJ 34 NDJ H17 H17 H 0 1 N N N -8.707 -20.896 9.623 3.894 1.602 0.862 H17 NDJ 35 NDJ H18 H18 H 0 1 N N N -10.613 -19.402 8.971 5.669 -0.090 0.497 H18 NDJ 36 NDJ H19 H19 H 0 1 N N N -11.313 -20.768 8.038 5.432 0.041 -1.262 H19 NDJ 37 NDJ H20 H20 H 0 1 N N N -12.367 -20.567 10.262 6.038 2.443 -1.165 H20 NDJ 38 NDJ H21 H21 H 0 1 N N N -11.460 -22.110 10.113 6.274 2.312 0.594 H21 NDJ 39 NDJ H22 H22 H 0 1 N N N -10.760 -20.743 11.046 7.347 1.428 -0.517 H22 NDJ 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NDJ O2 C2 SING N N 1 NDJ S7 C7 DOUB N N 2 NDJ C1 C2 SING N N 3 NDJ C1 N5 SING N N 4 NDJ C2 C3 SING N N 5 NDJ C7 N5 SING N N 6 NDJ C7 N8 SING N N 7 NDJ N5 C5 SING N N 8 NDJ C3 O3 SING N N 9 NDJ C3 C4 SING N N 10 NDJ N8 C9 SING N N 11 NDJ C9 C10 SING N N 12 NDJ C5 C4 SING N N 13 NDJ C5 C6 SING N N 14 NDJ C4 O4 SING N N 15 NDJ C10 C11 SING N N 16 NDJ C11 C12 SING N N 17 NDJ C6 O6 SING N N 18 NDJ O2 H1 SING N N 19 NDJ C2 H2 SING N N 20 NDJ C3 H3 SING N N 21 NDJ O3 H4 SING N N 22 NDJ C1 H5 SING N N 23 NDJ C1 H6 SING N N 24 NDJ C5 H7 SING N N 25 NDJ C6 H8 SING N N 26 NDJ C6 H9 SING N N 27 NDJ O6 H10 SING N N 28 NDJ C4 H11 SING N N 29 NDJ O4 H12 SING N N 30 NDJ N8 H13 SING N N 31 NDJ C9 H14 SING N N 32 NDJ C9 H15 SING N N 33 NDJ C10 H16 SING N N 34 NDJ C10 H17 SING N N 35 NDJ C11 H18 SING N N 36 NDJ C11 H19 SING N N 37 NDJ C12 H20 SING N N 38 NDJ C12 H21 SING N N 39 NDJ C12 H22 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NDJ SMILES ACDLabs 12.01 "S=C(NCCCC)N1C(C(O)C(O)C(O)C1)CO" NDJ InChI InChI 1.03 "InChI=1S/C11H22N2O4S/c1-2-3-4-12-11(18)13-5-8(15)10(17)9(16)7(13)6-14/h7-10,14-17H,2-6H2,1H3,(H,12,18)/t7-,8+,9+,10-/m1/s1" NDJ InChIKey InChI 1.03 VCRXDLDGTLMSHK-XFWSIPNHSA-N NDJ SMILES_CANONICAL CACTVS 3.385 "CCCCNC(=S)N1C[C@H](O)[C@@H](O)[C@@H](O)[C@H]1CO" NDJ SMILES CACTVS 3.385 "CCCCNC(=S)N1C[CH](O)[CH](O)[CH](O)[CH]1CO" NDJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCNC(=S)N1C[C@@H]([C@H]([C@H]([C@H]1CO)O)O)O" NDJ SMILES "OpenEye OEToolkits" 1.7.6 "CCCCNC(=S)N1CC(C(C(C1CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NDJ "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3S,4R,5S)-N-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1-carbothioamide" NDJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4R,5S)-N-butyl-2-(hydroxymethyl)-3,4,5-tris(oxidanyl)piperidine-1-carbothioamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NDJ "Create component" 2013-07-26 PDBJ NDJ "Initial release" 2014-04-16 RCSB #