data_NDO # _chem_comp.id NDO _chem_comp.name "NICOTINAMIDE-(6-DEAMINO-6-HYDROXY-ADENINE)-DINUCLEOTIDE PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 N6 O18 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 744.390 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NDO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AI3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NDO PA AP P 0 1 N N S -89.819 -66.685 -5.551 0.056 0.670 0.319 PA NDO 1 NDO O1A AO1 O 0 1 N N N -88.648 -67.305 -6.411 -0.325 -0.055 1.552 O1A NDO 2 NDO O2A AO2 O 0 1 N N N -89.495 -66.683 -4.140 0.618 2.128 0.705 O2A NDO 3 NDO O5B AO5* O 0 1 N N N -91.047 -67.674 -5.601 -1.234 0.826 -0.632 O5B NDO 4 NDO C5B AC5* C 0 1 N N N -91.195 -68.706 -4.378 -2.249 1.460 0.149 C5B NDO 5 NDO C4B AC4* C 0 1 N N R -92.162 -69.707 -4.931 -3.508 1.639 -0.701 C4B NDO 6 NDO O4B AO4* O 0 1 N N N -92.728 -70.461 -3.792 -4.072 0.355 -1.015 O4B NDO 7 NDO C3B AC3* C 0 1 N N R -93.334 -69.053 -5.434 -4.568 2.426 0.094 C3B NDO 8 NDO O3B AO3* O 0 1 N N N -93.329 -68.283 -6.645 -4.910 3.639 -0.581 O3B NDO 9 NDO C2B AC2* C 0 1 N N R -94.503 -69.971 -5.317 -5.789 1.470 0.143 C2B NDO 10 NDO O2B AO2* O 0 1 N N N -94.132 -71.247 -6.138 -7.008 2.189 -0.055 O2B NDO 11 NDO C1B AC1* C 0 1 N N R -94.175 -70.449 -3.923 -5.506 0.521 -1.050 C1B NDO 12 NDO N9A AN9 N 0 1 Y N N -94.652 -69.733 -2.745 -6.180 -0.766 -0.860 N9A NDO 13 NDO C8A AC8 C 0 1 Y N N -93.997 -68.741 -2.031 -5.659 -1.866 -0.247 C8A NDO 14 NDO N7A AN7 N 0 1 Y N N -94.693 -68.300 -1.022 -6.529 -2.834 -0.254 N7A NDO 15 NDO C5A AC5 C 0 1 Y N N -95.863 -69.028 -1.060 -7.661 -2.418 -0.870 C5A NDO 16 NDO C6A AC6 C 0 1 Y N N -97.003 -69.013 -0.247 -8.899 -3.009 -1.165 C6A NDO 17 NDO O6A AO6 O 0 1 N N N -97.113 -68.203 0.789 -9.158 -4.289 -0.806 O6A NDO 18 NDO N1A AN1 N 0 1 Y N N -98.010 -69.868 -0.550 -9.810 -2.285 -1.803 N1A NDO 19 NDO C2A AC2 C 0 1 Y N N -97.896 -70.692 -1.604 -9.568 -1.036 -2.156 C2A NDO 20 NDO N3A AN3 N 0 1 Y N N -96.856 -70.770 -2.426 -8.422 -0.439 -1.902 N3A NDO 21 NDO C4A AC4 C 0 1 Y N N -95.860 -69.900 -2.096 -7.452 -1.083 -1.263 C4A NDO 22 NDO O3 O3 O 0 1 N N N -90.538 -65.429 -5.839 1.199 -0.157 -0.457 O3 NDO 23 NDO PN NP P 0 1 N N N -90.864 -64.425 -7.086 2.200 -0.733 0.664 PN NDO 24 NDO O1N NO1 O 0 1 N N N -92.285 -64.660 -7.463 1.586 -1.999 1.302 O1N NDO 25 NDO O2N NO2 O -1 1 N N N -89.861 -64.340 -8.186 2.421 0.338 1.755 O2N NDO 26 NDO O5D NO5* O 0 1 N N N -90.965 -62.744 -6.463 3.611 -1.105 -0.016 O5D NDO 27 NDO C5D NC5* C 0 1 N N N -91.306 -62.291 -5.324 4.489 -1.495 1.041 C5D NDO 28 NDO C4D NC4* C 0 1 N N R -90.258 -61.754 -4.304 5.855 -1.864 0.460 C4D NDO 29 NDO O4D NO4* O 0 1 N N N -90.152 -62.037 -3.056 6.494 -0.697 -0.103 O4D NDO 30 NDO C3D NC3* C 0 1 N N S -88.804 -62.217 -4.654 6.810 -2.335 1.579 C3D NDO 31 NDO O3D NO3* O 0 1 N N N -88.265 -61.261 -5.501 6.849 -3.763 1.636 O3D NDO 32 NDO C2D NC2* C 0 1 N N R -88.121 -62.125 -3.222 8.188 -1.771 1.161 C2D NDO 33 NDO O2D NO2* O 0 1 N N N -87.319 -60.778 -3.022 9.121 -2.833 0.950 O2D NDO 34 NDO C1D NC1* C 0 1 N N R -89.254 -62.096 -2.140 7.900 -1.023 -0.159 C1D NDO 35 NDO N1N NN1 N 1 1 Y N N -88.893 -62.958 -0.995 8.704 0.199 -0.239 N1N NDO 36 NDO C2N NC2 C 0 1 Y N N -89.360 -62.529 0.245 9.785 0.205 -0.991 C2N NDO 37 NDO C3N NC3 C 0 1 Y N N -89.035 -63.334 1.377 10.578 1.350 -1.084 C3N NDO 38 NDO C7N NC7 C 0 1 N N N -89.479 -62.961 2.716 11.795 1.355 -1.922 C7N NDO 39 NDO O7N NO7 O 0 1 N N N -90.092 -61.911 2.938 12.116 0.354 -2.534 O7N NDO 40 NDO N7N NN7 N 0 1 N N N -89.215 -63.766 3.736 12.549 2.468 -2.009 N7N NDO 41 NDO C4N NC4 C 0 1 Y N N -88.281 -64.486 1.194 10.197 2.496 -0.375 C4N NDO 42 NDO C5N NC5 C 0 1 Y N N -87.844 -64.880 -0.007 9.049 2.439 0.395 C5N NDO 43 NDO C6N NC6 C 0 1 Y N N -88.146 -64.124 -1.105 8.321 1.264 0.439 C6N NDO 44 NDO P2B AP2* P 0 1 N N N -95.310 -72.099 -6.797 -7.979 1.806 1.170 P2B NDO 45 NDO O1X AOP1 O 0 1 N N N -95.813 -71.239 -7.885 -8.127 0.335 1.241 O1X NDO 46 NDO O2X AOP2 O 0 1 N N N -94.642 -73.330 -7.258 -7.344 2.348 2.547 O2X NDO 47 NDO O3X AOP3 O 0 1 N N N -96.264 -72.299 -5.690 -9.423 2.481 0.942 O3X NDO 48 NDO HOA2 2HOA H 0 0 N N N -90.199 -66.310 -3.622 0.854 2.565 -0.124 HOA2 NDO 49 NDO H51A AH51 H 0 0 N N N -90.236 -69.133 -4.001 -2.480 0.840 1.016 H51A NDO 50 NDO H52A AH52 H 0 0 N N N -91.493 -68.247 -3.406 -1.894 2.435 0.483 H52A NDO 51 NDO H4B AH4* H 0 1 N N N -91.621 -70.306 -5.700 -3.263 2.171 -1.620 H4B NDO 52 NDO H3B AH3* H 0 1 N N N -93.395 -68.172 -4.752 -4.210 2.639 1.101 H3B NDO 53 NDO HO3A AHO3 H 0 0 N N N -94.105 -67.849 -6.978 -4.117 4.192 -0.581 HO3A NDO 54 NDO H2B AH2* H 0 1 N N N -95.503 -69.552 -5.574 -5.814 0.917 1.082 H2B NDO 55 NDO H1B AH1* H 0 1 N N N -94.723 -71.419 -3.891 -5.817 0.981 -1.988 H1B NDO 56 NDO H8A AH8 H 0 1 N N N -92.995 -68.332 -2.249 -4.669 -1.926 0.182 H8A NDO 57 NDO HO6A AHO6 H 0 0 N N N -97.886 -68.192 1.340 -9.545 -4.259 0.079 HO6A NDO 58 NDO H2A AH2 H 0 1 N N N -98.739 -71.371 -1.815 -10.338 -0.483 -2.674 H2A NDO 59 NDO H51N NH51 H 0 0 N N N -92.062 -61.488 -5.489 4.071 -2.357 1.562 H51N NDO 60 NDO H52N NH52 H 0 0 N N N -91.908 -63.077 -4.811 4.604 -0.668 1.742 H52N NDO 61 NDO H4D NH4* H 0 1 N N N -90.664 -60.721 -4.416 5.747 -2.640 -0.298 H4D NDO 62 NDO H3D NH3* H 0 1 N N N -88.698 -63.212 -5.144 6.503 -1.924 2.541 H3D NDO 63 NDO HO3N NHO3 H 0 0 N N N -87.382 -61.542 -5.713 7.458 -3.997 2.350 HO3N NDO 64 NDO H2D NH2* H 0 1 N N N -87.430 -62.995 -3.132 8.562 -1.080 1.916 H2D NDO 65 NDO HO2N NHO2 H 0 0 N N N -86.910 -60.723 -2.166 9.211 -3.297 1.793 HO2N NDO 66 NDO H1D NH1* H 0 1 N N N -89.593 -61.392 -1.344 8.106 -1.668 -1.013 H1D NDO 67 NDO H2N NH2 H 0 1 N N N -89.954 -61.603 0.326 10.067 -0.686 -1.531 H2N NDO 68 NDO H71N NH71 H 0 0 N N N -88.709 -64.632 3.552 13.348 2.472 -2.559 H71N NDO 69 NDO H72N NH72 H 0 0 N N N -89.525 -63.505 4.672 12.291 3.268 -1.524 H72N NDO 70 NDO H4N NH4 H 0 1 N N N -88.013 -65.125 2.052 10.784 3.400 -0.428 H4N NDO 71 NDO H5N NH5 H 0 1 N N N -87.249 -65.805 -0.089 8.725 3.303 0.956 H5N NDO 72 NDO H6N NH6 H 0 1 N N N -87.782 -64.458 -2.091 7.424 1.217 1.040 H6N NDO 73 NDO HOP2 2HOP H 0 0 N N N -95.343 -73.837 -7.650 -7.265 3.308 2.459 HOP2 NDO 74 NDO HOP3 3HOP H 0 0 N N N -96.965 -72.806 -6.082 -9.972 2.227 1.697 HOP3 NDO 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NDO PA O1A DOUB N N 1 NDO PA O2A SING N N 2 NDO PA O5B SING N N 3 NDO PA O3 SING N N 4 NDO O2A HOA2 SING N N 5 NDO O5B C5B SING N N 6 NDO C5B C4B SING N N 7 NDO C5B H51A SING N N 8 NDO C5B H52A SING N N 9 NDO C4B O4B SING N N 10 NDO C4B C3B SING N N 11 NDO C4B H4B SING N N 12 NDO O4B C1B SING N N 13 NDO C3B O3B SING N N 14 NDO C3B C2B SING N N 15 NDO C3B H3B SING N N 16 NDO O3B HO3A SING N N 17 NDO C2B O2B SING N N 18 NDO C2B C1B SING N N 19 NDO C2B H2B SING N N 20 NDO O2B P2B SING N N 21 NDO C1B N9A SING N N 22 NDO C1B H1B SING N N 23 NDO N9A C8A SING Y N 24 NDO N9A C4A SING Y N 25 NDO C8A N7A DOUB Y N 26 NDO C8A H8A SING N N 27 NDO N7A C5A SING Y N 28 NDO C5A C6A SING Y N 29 NDO C5A C4A DOUB Y N 30 NDO C6A O6A SING N N 31 NDO C6A N1A DOUB Y N 32 NDO O6A HO6A SING N N 33 NDO N1A C2A SING Y N 34 NDO C2A N3A DOUB Y N 35 NDO C2A H2A SING N N 36 NDO N3A C4A SING Y N 37 NDO O3 PN SING N N 38 NDO PN O1N DOUB N N 39 NDO PN O2N SING N N 40 NDO PN O5D SING N N 41 NDO O5D C5D SING N N 42 NDO C5D C4D SING N N 43 NDO C5D H51N SING N N 44 NDO C5D H52N SING N N 45 NDO C4D O4D SING N N 46 NDO C4D C3D SING N N 47 NDO C4D H4D SING N N 48 NDO O4D C1D SING N N 49 NDO C3D O3D SING N N 50 NDO C3D C2D SING N N 51 NDO C3D H3D SING N N 52 NDO O3D HO3N SING N N 53 NDO C2D O2D SING N N 54 NDO C2D C1D SING N N 55 NDO C2D H2D SING N N 56 NDO O2D HO2N SING N N 57 NDO C1D N1N SING N N 58 NDO C1D H1D SING N N 59 NDO N1N C2N SING Y N 60 NDO N1N C6N DOUB Y N 61 NDO C2N C3N DOUB Y N 62 NDO C2N H2N SING N N 63 NDO C3N C7N SING N N 64 NDO C3N C4N SING Y N 65 NDO C7N O7N DOUB N N 66 NDO C7N N7N SING N N 67 NDO N7N H71N SING N N 68 NDO N7N H72N SING N N 69 NDO C4N C5N DOUB Y N 70 NDO C4N H4N SING N N 71 NDO C5N C6N SING Y N 72 NDO C5N H5N SING N N 73 NDO C6N H6N SING N N 74 NDO P2B O1X DOUB N N 75 NDO P2B O2X SING N N 76 NDO P2B O3X SING N N 77 NDO O2X HOP2 SING N N 78 NDO O3X HOP3 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NDO SMILES_CANONICAL CACTVS 3.341 "NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(O)ncnc45)[C@@H](O)[C@H]2O" NDO SMILES CACTVS 3.341 "NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(O)ncnc45)[CH](O)[CH]2O" NDO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5O)OP(=O)(O)O)O)O)O)C(=O)N" NDO SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5O)OP(=O)(O)O)O)O)O)C(=O)N" NDO InChI InChI 1.03 ;InChI=1S/C21H27N6O18P3/c22-17(31)9-2-1-3-26(4-9)20-15(30)13(28)10(42-20)5-40-47(36,37)45-48(38,39)41-6-11-14(29)16(44-46(33,34)35)21(43-11)27-8-25-12-18(27)23-7-24-19(12)32/h1-4,7-8,10-11,13-16,20-21,28-30H,5-6H2,(H6-,22,23,24,31,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1 ; NDO InChIKey InChI 1.03 WKSUSMNNBQFESD-NNYOXOHSSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NDO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2R,3R,4R,5R)-3-hydroxy-5-(6-hydroxypurin-9-yl)-4-phosphonooxy-oxolan-2-yl]methoxy]phosphoryl] phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NDO "Create component" 1999-07-08 RCSB NDO "Modify descriptor" 2011-06-04 RCSB #