data_NDW # _chem_comp.id NDW _chem_comp.name alpha-NADPH _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 N7 O17 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[[(2~{R},3~{S},4~{R},5~{S})-5-(3-aminocarbonyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-25 _chem_comp.pdbx_modified_date 2022-01-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 745.421 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NDW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7T7Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NDW PA P1 P 0 1 N N N 46.638 37.109 114.092 -0.404 2.777 1.534 PA NDW 1 NDW O1A O1 O 0 1 N N N 47.039 38.360 113.403 -0.835 2.636 2.943 O1A NDW 2 NDW O2A O2 O 0 1 N N N 45.404 36.434 113.646 0.226 4.241 1.309 O2A NDW 3 NDW O5B O3 O 0 1 N N N 47.831 36.053 114.062 0.703 1.658 1.197 O5B NDW 4 NDW C5B C1 C 0 1 N N N 49.170 36.516 113.833 1.904 1.498 1.956 C5B NDW 5 NDW C4B C2 C 0 1 N N R 49.962 35.421 113.178 2.729 0.350 1.370 C4B NDW 6 NDW O4B O4 O 0 1 N N N 49.744 35.478 111.749 3.264 0.723 0.081 O4B NDW 7 NDW C3B C3 C 0 1 N N R 51.483 35.522 113.304 3.970 0.077 2.248 C3B NDW 8 NDW O3B O5 O 0 1 N N N 51.948 35.147 114.591 3.729 -1.026 3.125 O3B NDW 9 NDW C2B C4 C 0 1 N N R 51.886 34.604 112.164 5.080 -0.273 1.232 C2B NDW 10 NDW O2B O6 O 0 1 N N N 51.499 33.276 112.455 5.558 -1.601 1.450 O2B NDW 11 NDW C1B C5 C 0 1 N N R 50.923 35.086 111.089 4.378 -0.169 -0.141 C1B NDW 12 NDW N9A N1 N 0 1 Y N N 51.430 36.202 110.307 5.291 0.394 -1.139 N9A NDW 13 NDW C8A C6 C 0 1 Y N N 51.118 37.527 110.454 5.422 1.713 -1.459 C8A NDW 14 NDW N7A N2 N 0 1 Y N N 51.742 38.298 109.607 6.325 1.858 -2.385 N7A NDW 15 NDW C5A C7 C 0 1 Y N N 52.505 37.432 108.848 6.828 0.645 -2.718 C5A NDW 16 NDW C6A C8 C 0 1 Y N N 53.378 37.645 107.769 7.800 0.194 -3.626 C6A NDW 17 NDW N6A N3 N 0 1 N N N 53.639 38.843 107.263 8.478 1.086 -4.439 N6A NDW 18 NDW N1A N4 N 0 1 Y N N 53.971 36.559 107.225 8.056 -1.109 -3.686 N1A NDW 19 NDW C2A C9 C 0 1 Y N N 53.701 35.358 107.745 7.415 -1.967 -2.913 C2A NDW 20 NDW N3A N5 N 0 1 Y N N 52.898 35.039 108.752 6.496 -1.591 -2.049 N3A NDW 21 NDW C4A C10 C 0 1 Y N N 52.323 36.133 109.270 6.174 -0.308 -1.918 C4A NDW 22 NDW O3 O7 O 0 1 N N N 46.507 37.391 115.652 -1.674 2.584 0.563 O3 NDW 23 NDW PN P2 P 0 1 N N N 47.239 38.438 116.600 -3.186 3.138 0.576 PN NDW 24 NDW O1N O8 O 0 1 N N N 48.685 38.406 116.308 -3.704 3.126 1.962 O1N NDW 25 NDW O2N O9 O 0 1 N N N 46.544 39.737 116.507 -3.211 4.643 0.006 O2N NDW 26 NDW O5D O10 O 0 1 N N N 46.998 37.812 118.035 -4.109 2.198 -0.350 O5D NDW 27 NDW C5D C11 C 0 1 N N N 46.168 38.558 118.927 -5.524 2.365 -0.462 C5D NDW 28 NDW C4D C12 C 0 1 N N R 44.898 37.784 119.155 -6.088 1.312 -1.418 C4D NDW 29 NDW O4D O11 O 0 1 N N N 44.100 37.786 117.949 -5.953 0.004 -0.837 O4D NDW 30 NDW C3D C13 C 0 1 N N S 45.078 36.318 119.551 -7.591 1.560 -1.644 C3D NDW 31 NDW O3D O12 O 0 1 N N N 44.968 36.194 120.958 -7.870 1.706 -3.038 O3D NDW 32 NDW C2D C14 C 0 1 N N R 43.931 35.611 118.837 -8.275 0.289 -1.085 C2D NDW 33 NDW O2D O13 O 0 1 N N N 43.067 34.995 119.770 -8.567 -0.636 -2.134 O2D NDW 34 NDW C1D C15 C 0 1 N N S 43.299 36.641 117.904 -7.185 -0.275 -0.137 C1D NDW 35 NDW N1N N6 N 0 1 N N N 41.880 37.021 118.179 -7.359 -1.719 0.047 N1N NDW 36 NDW C2N C16 C 0 1 N N N 41.038 37.274 117.143 -6.396 -2.583 -0.393 C2N NDW 37 NDW C3N C17 C 0 1 N N N 39.826 37.830 117.376 -6.356 -3.849 0.063 C3N NDW 38 NDW C7N C18 C 0 1 N N N 39.300 38.718 116.346 -5.355 -4.726 -0.415 C7N NDW 39 NDW O7N O14 O 0 1 N N N 39.891 38.804 115.272 -4.541 -4.334 -1.231 O7N NDW 40 NDW N7N N7 N 0 1 N N N 38.192 39.390 116.597 -5.303 -5.997 0.032 N7N NDW 41 NDW C4N C19 C 0 1 N N N 39.132 37.483 118.637 -7.353 -4.348 1.070 C4N NDW 42 NDW C5N C20 C 0 1 N N N 40.074 36.979 119.629 -8.536 -3.427 1.154 C5N NDW 43 NDW C6N C21 C 0 1 N N N 41.349 37.194 119.433 -8.498 -2.206 0.673 C6N NDW 44 NDW P2B P3 P 0 1 N N N 52.748 32.369 112.813 7.099 -1.936 1.777 P2B NDW 45 NDW O1X O15 O 0 1 N N N 53.278 32.764 114.153 7.497 -1.294 3.199 O1X NDW 46 NDW O2X O16 O 0 1 N N N 52.216 30.979 112.807 7.301 -3.532 1.832 O2X NDW 47 NDW O3X O17 O 0 1 N N N 53.727 32.609 111.725 7.963 -1.365 0.719 O3X NDW 48 NDW H1 H1 H 0 1 N N N 45.013 36.926 112.934 0.530 4.404 0.406 H1 NDW 49 NDW H2 H2 H 0 1 N N N 49.636 36.785 114.792 2.484 2.420 1.917 H2 NDW 50 NDW H3 H3 H 0 1 N N N 49.148 37.398 113.176 1.651 1.271 2.992 H3 NDW 51 NDW H4 H4 H 0 1 N N N 49.634 34.448 113.572 2.119 -0.549 1.284 H4 NDW 52 NDW H5 H5 H 0 1 N N N 51.794 36.550 113.066 4.237 0.966 2.819 H5 NDW 53 NDW H6 H6 H 0 1 N N N 51.647 35.778 115.234 3.001 -0.883 3.745 H6 NDW 54 NDW H7 H7 H 0 1 N N N 52.941 34.721 111.874 5.898 0.443 1.300 H7 NDW 55 NDW H8 H8 H 0 1 N N N 50.709 34.243 110.416 4.022 -1.148 -0.460 H8 NDW 56 NDW H9 H9 H 0 1 N N N 50.426 37.896 111.196 4.861 2.519 -1.009 H9 NDW 57 NDW H10 H10 H 0 1 N N N 54.281 38.751 106.502 8.283 2.034 -4.386 H10 NDW 58 NDW H11 H11 H 0 1 N N N 52.790 39.258 106.935 9.147 0.762 -5.062 H11 NDW 59 NDW H12 H12 H 0 1 N N N 54.210 34.527 107.278 7.653 -3.018 -2.994 H12 NDW 60 NDW H13 H13 H 0 1 N N N 47.164 40.411 116.257 -2.884 4.726 -0.901 H13 NDW 61 NDW H14 H14 H 0 1 N N N 46.690 38.705 119.884 -5.983 2.248 0.519 H14 NDW 62 NDW H15 H15 H 0 1 N N N 45.932 39.537 118.484 -5.742 3.361 -0.849 H15 NDW 63 NDW H16 H16 H 0 1 N N N 44.333 38.282 119.957 -5.558 1.353 -2.369 H16 NDW 64 NDW H17 H17 H 0 1 N N N 46.044 35.942 119.182 -7.919 2.444 -1.096 H17 NDW 65 NDW H18 H18 H 0 1 N N N 45.695 36.643 121.374 -8.803 1.865 -3.238 H18 NDW 66 NDW H19 H19 H 0 1 N N N 44.376 34.830 118.203 -9.178 0.544 -0.531 H19 NDW 67 NDW H20 H20 H 0 1 N N N 43.559 34.376 120.297 -9.176 -0.294 -2.802 H20 NDW 68 NDW H21 H21 H 0 1 N N N 43.338 36.223 116.887 -7.206 0.238 0.824 H21 NDW 69 NDW H23 H23 H 0 1 N N N 41.336 37.031 116.134 -5.662 -2.249 -1.112 H23 NDW 70 NDW H26 H26 H 0 1 N N N 37.806 39.995 115.901 -5.952 -6.309 0.682 H26 NDW 71 NDW H27 H27 H 0 1 N N N 37.739 39.294 117.483 -4.617 -6.598 -0.296 H27 NDW 72 NDW H28 H28 H 0 1 N N N 38.637 38.381 119.034 -7.692 -5.341 0.776 H28 NDW 73 NDW H29 H29 H 0 1 N N N 38.378 36.709 118.431 -6.875 -4.408 2.048 H29 NDW 74 NDW H30 H30 H 0 1 N N N 39.729 36.443 120.501 -9.442 -3.777 1.627 H30 NDW 75 NDW H32 H32 H 0 1 N N N 41.980 37.506 120.252 -9.368 -1.573 0.762 H32 NDW 76 NDW H34 H34 H 0 1 N N N 54.161 33.102 114.058 6.970 -1.623 3.940 H34 NDW 77 NDW H35 H35 H 0 1 N N N 52.610 30.492 112.093 8.208 -3.807 2.025 H35 NDW 78 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NDW N1A C2A DOUB Y N 1 NDW N1A C6A SING Y N 2 NDW N6A C6A SING N N 3 NDW C2A N3A SING Y N 4 NDW C6A C5A DOUB Y N 5 NDW N3A C4A DOUB Y N 6 NDW C5A C4A SING Y N 7 NDW C5A N7A SING Y N 8 NDW C4A N9A SING Y N 9 NDW N7A C8A DOUB Y N 10 NDW N9A C8A SING Y N 11 NDW N9A C1B SING N N 12 NDW C1B O4B SING N N 13 NDW C1B C2B SING N N 14 NDW O3X P2B DOUB N N 15 NDW O4B C4B SING N N 16 NDW C2B O2B SING N N 17 NDW C2B C3B SING N N 18 NDW O2B P2B SING N N 19 NDW O2X P2B SING N N 20 NDW P2B O1X SING N N 21 NDW C4B C3B SING N N 22 NDW C4B C5B SING N N 23 NDW C3B O3B SING N N 24 NDW O1A PA DOUB N N 25 NDW O2A PA SING N N 26 NDW C5B O5B SING N N 27 NDW O5B PA SING N N 28 NDW PA O3 SING N N 29 NDW O7N C7N DOUB N N 30 NDW O3 PN SING N N 31 NDW O1N PN DOUB N N 32 NDW C7N N7N SING N N 33 NDW C7N C3N SING N N 34 NDW O2N PN SING N N 35 NDW PN O5D SING N N 36 NDW C2N C3N DOUB N N 37 NDW C2N N1N SING N N 38 NDW C3N C4N SING N N 39 NDW C1D O4D SING N N 40 NDW C1D N1N SING N N 41 NDW C1D C2D SING N N 42 NDW O4D C4D SING N N 43 NDW O5D C5D SING N N 44 NDW N1N C6N SING N N 45 NDW C4N C5N SING N N 46 NDW C2D C3D SING N N 47 NDW C2D O2D SING N N 48 NDW C5D C4D SING N N 49 NDW C4D C3D SING N N 50 NDW C6N C5N DOUB N N 51 NDW C3D O3D SING N N 52 NDW O2A H1 SING N N 53 NDW C5B H2 SING N N 54 NDW C5B H3 SING N N 55 NDW C4B H4 SING N N 56 NDW C3B H5 SING N N 57 NDW O3B H6 SING N N 58 NDW C2B H7 SING N N 59 NDW C1B H8 SING N N 60 NDW C8A H9 SING N N 61 NDW N6A H10 SING N N 62 NDW N6A H11 SING N N 63 NDW C2A H12 SING N N 64 NDW O2N H13 SING N N 65 NDW C5D H14 SING N N 66 NDW C5D H15 SING N N 67 NDW C4D H16 SING N N 68 NDW C3D H17 SING N N 69 NDW O3D H18 SING N N 70 NDW C2D H19 SING N N 71 NDW O2D H20 SING N N 72 NDW C1D H21 SING N N 73 NDW C2N H23 SING N N 74 NDW N7N H26 SING N N 75 NDW N7N H27 SING N N 76 NDW C4N H28 SING N N 77 NDW C4N H29 SING N N 78 NDW C5N H30 SING N N 79 NDW C6N H32 SING N N 80 NDW O1X H34 SING N N 81 NDW O2X H35 SING N N 82 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NDW InChI InChI 1.03 "InChI=1S/C21H30N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1,3-4,7-8,10-11,13-16,20-21,29-31H,2,5-6H2,(H2,23,32)(H,36,37)(H,38,39)(H2,22,24,25)(H2,33,34,35)/t10-,11-,13-,14-,15-,16-,20+,21-/m1/s1" NDW InChIKey InChI 1.03 ACFIXJIJDZMPPO-OPDHFMQKSA-N NDW SMILES_CANONICAL CACTVS 3.385 "NC(=O)C1=CN(C=CC1)[C@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" NDW SMILES CACTVS 3.385 "NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" NDW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@H](O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N" NDW SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N" # _pdbx_chem_comp_identifier.comp_id NDW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{S})-5-(3-aminocarbonyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NDW _pdbx_chem_comp_synonyms.name "[[(2~{R},3~{S},4~{R},5~{S})-5-(3-aminocarbonyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NDW "Create component" 2022-01-25 RCSB NDW "Modify synonyms" 2022-01-25 RCSB NDW "Initial release" 2022-02-02 RCSB ##