data_NEX
#
_chem_comp.id NEX
_chem_comp.name "(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H56 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;(3S,5R,6R,3'S,5'R,6'S)-5',6'-EPOXY-6,7-DIDEHYDRO- 5,6,5',6'-TETRAHYDRO-BETA,BETA-CAROTENE-3,5,3'-TRIOL; 9'-CIS-NEOXANTHIN
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-12-22
_chem_comp.pdbx_modified_date 2020-05-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 600.870
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NEX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1RWT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NEX C1 C1 C 0 1 N N N 29.016 28.917 116.267 0.260 -1.326 -11.298 C1 NEX 1
NEX C2 C2 C 0 1 N N N 29.578 27.762 117.122 1.065 -1.365 -12.601 C2 NEX 2
NEX C3 C3 C 0 1 N N S 29.242 27.722 118.624 0.754 -0.116 -13.428 C3 NEX 3
NEX C4 C4 C 0 1 N N N 27.734 27.959 118.868 1.214 1.132 -12.674 C4 NEX 4
NEX C5 C5 C 0 1 N N R 27.068 29.135 118.129 0.410 1.265 -11.371 C5 NEX 5
NEX C6 C6 C 0 1 N N N 27.482 29.056 116.607 0.553 -0.021 -10.590 C6 NEX 6
NEX C7 C7 C 0 1 N N R 26.512 28.972 115.598 0.916 -0.007 -9.335 C7 NEX 7
NEX C8 C8 C 0 1 N N N 25.553 28.853 114.601 1.278 0.007 -8.079 C8 NEX 8
NEX C9 C9 C 0 1 N N N 25.056 27.584 114.031 0.353 0.091 -7.116 C9 NEX 9
NEX C10 C10 C 0 1 N N N 24.078 27.669 113.104 0.745 0.107 -5.757 C10 NEX 10
NEX C11 C11 C 0 1 N N N 23.182 26.629 112.698 -0.197 0.192 -4.776 C11 NEX 11
NEX C12 C12 C 0 1 N N N 22.213 26.863 111.789 0.191 0.208 -3.430 C12 NEX 12
NEX C13 C13 C 0 1 N N N 21.203 25.952 111.307 -0.765 0.187 -2.434 C13 NEX 13
NEX C14 C14 C 0 1 N N N 20.294 26.442 110.436 -0.379 0.096 -1.097 C14 NEX 14
NEX C15 C15 C 0 1 N N N 19.156 25.765 109.890 -1.340 0.076 -0.098 C15 NEX 15
NEX C16 C16 C 0 1 N N N 29.272 28.573 114.783 0.671 -2.498 -10.405 C16 NEX 16
NEX C17 C17 C 0 1 N N N 29.756 30.224 116.576 -1.234 -1.417 -11.609 C17 NEX 17
NEX C18 C18 C 0 1 N N N 25.545 29.049 118.346 0.959 2.429 -10.545 C18 NEX 18
NEX C19 C19 C 0 1 N N N 25.359 26.326 114.797 -1.107 0.168 -7.479 C19 NEX 19
NEX C20 C20 C 0 1 N N N 21.197 24.555 111.854 -2.227 0.264 -2.793 C20 NEX 20
NEX O3 O3 O 0 1 N N N 29.601 26.450 119.147 1.439 -0.192 -14.680 O3 NEX 21
NEX O4 O4 O 0 1 N N N 27.519 30.362 118.685 -0.966 1.497 -11.679 O4 NEX 22
NEX C21 C21 C 0 1 N N N 9.586 28.240 103.117 1.411 -1.097 10.209 C21 NEX 23
NEX C22 C22 C 0 1 N N N 8.988 28.782 101.800 2.177 -1.173 11.529 C22 NEX 24
NEX C23 C23 C 0 1 N N S 9.916 28.883 100.585 2.892 0.163 11.756 C23 NEX 25
NEX C24 C24 C 0 1 N N N 10.686 27.601 100.236 1.854 1.208 12.168 C24 NEX 26
NEX C25 C25 C 0 1 N N R 11.173 26.825 101.434 0.739 1.287 11.137 C25 NEX 27
NEX C26 C26 C 0 1 N N S 10.665 27.104 102.853 0.478 0.111 10.210 C26 NEX 28
NEX C27 C27 C 0 1 N N N 10.734 26.005 103.890 -0.953 -0.172 9.833 C27 NEX 29
NEX C28 C28 C 0 1 N N N 11.687 25.781 104.807 -1.339 -0.080 8.555 C28 NEX 30
NEX C29 C29 C 0 1 N N N 11.782 24.669 105.788 -2.704 -0.235 8.215 C29 NEX 31
NEX C30 C30 C 0 1 N N N 12.845 24.611 106.619 -3.082 -0.256 6.906 C30 NEX 32
NEX C31 C31 C 0 1 N N N 13.936 25.549 106.728 -2.119 -0.125 5.896 C31 NEX 33
NEX C32 C32 C 0 1 N N N 14.990 25.320 107.539 -2.502 -0.146 4.570 C32 NEX 34
NEX C33 C33 C 0 1 N N N 16.141 26.186 107.805 -1.535 -0.126 3.564 C33 NEX 35
NEX C34 C34 C 0 1 N N N 17.098 25.716 108.630 -1.918 -0.035 2.236 C34 NEX 36
NEX C35 C35 C 0 1 N N N 18.296 26.383 109.057 -0.955 -0.015 1.233 C35 NEX 37
NEX C36 C36 C 0 1 N N N 8.420 27.719 103.969 0.586 -2.374 10.028 C36 NEX 38
NEX C37 C37 C 0 1 N N N 10.251 29.405 103.858 2.404 -0.970 9.052 C37 NEX 39
NEX C38 C38 C 0 1 N N N 11.766 25.496 101.041 -0.488 2.081 11.588 C38 NEX 40
NEX C39 C39 C 0 1 N N N 10.702 23.644 105.791 -3.740 -0.376 9.300 C39 NEX 41
NEX C40 C40 C 0 1 N N N 16.173 27.534 107.148 -0.073 -0.203 3.923 C40 NEX 42
NEX O23 O23 O 0 1 N N N 9.194 29.329 99.445 3.866 0.020 12.792 O23 NEX 43
NEX O24 O24 O 0 1 N N N 11.948 27.591 102.379 1.052 1.345 9.752 O24 NEX 44
NEX H21 1H2 H 0 1 N N N 29.279 26.792 116.659 2.130 -1.392 -12.370 H21 NEX 45
NEX H22 2H2 H 0 1 N N N 30.685 27.727 116.999 0.793 -2.254 -13.170 H22 NEX 46
NEX H3 H3 H 0 1 N N N 29.813 28.532 119.133 -0.319 -0.057 -13.605 H3 NEX 47
NEX H41 1H4 H 0 1 N N N 27.173 27.020 118.647 2.276 1.046 -12.441 H41 NEX 48
NEX H42 2H4 H 0 1 N N N 27.549 28.060 119.963 1.049 2.013 -13.294 H42 NEX 49
NEX H8 H8 H 0 1 N N N 25.164 29.820 114.241 2.325 -0.047 -7.819 H8 NEX 50
NEX H10 H10 H 0 1 N N N 24.005 28.667 112.641 1.792 0.051 -5.496 H10 NEX 51
NEX H11 H11 H 0 1 N N N 23.240 25.604 113.102 -1.243 0.247 -5.036 H11 NEX 52
NEX H12 H12 H 0 1 N N N 22.250 27.895 111.403 1.239 0.236 -3.171 H12 NEX 53
NEX H14 H14 H 0 1 N N N 20.498 27.486 110.145 0.668 0.041 -0.841 H14 NEX 54
NEX H15 H15 H 0 1 N N N 18.929 24.711 110.123 -2.387 0.131 -0.355 H15 NEX 55
NEX H161 1H16 H 0 0 N N N 28.865 29.407 114.165 0.109 -2.459 -9.472 H161 NEX 56
NEX H162 2H16 H 0 0 N N N 30.344 28.357 114.567 0.459 -3.437 -10.917 H162 NEX 57
NEX H163 3H16 H 0 0 N N N 28.859 27.578 114.491 1.738 -2.435 -10.190 H163 NEX 58
NEX H171 1H17 H 0 0 N N N 29.349 31.058 115.958 -1.802 -1.373 -10.680 H171 NEX 59
NEX H172 2H17 H 0 0 N N N 29.734 30.465 117.664 -1.523 -0.584 -12.251 H172 NEX 60
NEX H173 3H17 H 0 0 N N N 30.858 30.115 116.452 -1.443 -2.358 -12.119 H173 NEX 61
NEX H181 1H18 H 0 0 N N N 25.062 29.900 117.811 0.876 3.353 -11.117 H181 NEX 62
NEX H182 2H18 H 0 0 N N N 25.124 28.061 118.044 0.386 2.522 -9.622 H182 NEX 63
NEX H183 3H18 H 0 0 N N N 25.268 29.009 119.425 2.006 2.243 -10.306 H183 NEX 64
NEX H191 1H19 H 0 0 N N N 24.983 25.368 114.366 -1.213 0.143 -8.564 H191 NEX 65
NEX H192 2H19 H 0 0 N N N 26.458 26.251 114.969 -1.635 -0.679 -7.043 H192 NEX 66
NEX H193 3H19 H 0 0 N N N 24.992 26.431 115.844 -1.529 1.096 -7.094 H193 NEX 67
NEX H201 1H20 H 0 0 N N N 20.416 23.851 111.481 -2.337 0.239 -3.877 H201 NEX 68
NEX H202 2H20 H 0 0 N N N 22.203 24.098 111.702 -2.753 -0.583 -2.354 H202 NEX 69
NEX H203 3H20 H 0 0 N N N 21.149 24.598 112.967 -2.647 1.193 -2.406 H203 NEX 70
NEX HO3 HO3 H 0 1 N N N 29.393 26.425 120.073 1.217 0.611 -15.169 HO3 NEX 71
NEX HO4 HO4 H 0 1 N N N 27.108 31.087 118.229 -1.003 2.318 -12.190 HO4 NEX 72
NEX H221 1H22 H 0 0 N N N 8.090 28.178 101.528 2.912 -1.976 11.480 H221 NEX 73
NEX H222 2H22 H 0 0 N N N 8.522 29.777 101.990 1.481 -1.359 12.346 H222 NEX 74
NEX H23 H23 H 0 1 N N N 10.691 29.626 100.884 3.381 0.478 10.835 H23 NEX 75
NEX H241 1H24 H 0 0 N N N 10.074 26.947 99.571 2.337 2.181 12.252 H241 NEX 76
NEX H242 2H24 H 0 0 N N N 11.533 27.830 99.549 1.432 0.933 13.135 H242 NEX 77
NEX H27 H27 H 0 1 N N N 9.953 25.232 103.995 -1.667 -0.450 10.594 H27 NEX 78
NEX H28 H28 H 0 1 N N N 12.452 26.573 104.749 -0.608 0.113 7.783 H28 NEX 79
NEX H30 H30 H 0 1 N N N 12.819 23.718 107.266 -4.124 -0.375 6.646 H30 NEX 80
NEX H31 H31 H 0 1 N N N 13.966 26.493 106.159 -1.077 -0.006 6.155 H31 NEX 81
NEX H32 H32 H 0 1 N N N 14.902 24.335 108.028 -3.550 -0.179 4.311 H32 NEX 82
NEX H34 H34 H 0 1 N N N 16.881 24.695 108.987 -2.966 0.019 1.979 H34 NEX 83
NEX H35 H35 H 0 1 N N N 18.564 27.403 108.734 0.092 -0.070 1.490 H35 NEX 84
NEX H361 1H36 H 0 0 N N N 8.851 27.327 104.919 1.252 -3.237 10.014 H361 NEX 85
NEX H362 2H36 H 0 0 N N N 7.625 28.483 104.133 -0.118 -2.471 10.854 H362 NEX 86
NEX H363 3H36 H 0 0 N N N 7.791 26.969 103.434 0.039 -2.322 9.087 H363 NEX 87
NEX H371 1H37 H 0 0 N N N 10.682 29.013 104.808 3.063 -1.838 9.042 H371 NEX 88
NEX H372 2H37 H 0 0 N N N 11.003 29.938 103.232 1.859 -0.916 8.110 H372 NEX 89
NEX H373 3H37 H 0 0 N N N 9.556 30.261 104.022 2.997 -0.065 9.181 H373 NEX 90
NEX H381 1H38 H 0 0 N N N 12.126 24.922 101.926 -0.171 2.922 12.205 H381 NEX 91
NEX H382 2H38 H 0 0 N N N 11.048 24.895 100.434 -1.022 2.452 10.714 H382 NEX 92
NEX H383 3H38 H 0 0 N N N 12.574 25.621 100.283 -1.146 1.433 12.168 H383 NEX 93
NEX H391 1H39 H 0 0 N N N 10.773 22.809 106.527 -3.267 -0.241 10.273 H391 NEX 94
NEX H392 2H39 H 0 0 N N N 9.716 24.152 105.909 -4.514 0.378 9.165 H392 NEX 95
NEX H393 3H39 H 0 0 N N N 10.599 23.218 104.765 -4.187 -1.369 9.249 H393 NEX 96
NEX H401 1H40 H 0 0 N N N 17.049 28.193 107.350 0.036 -0.181 5.007 H401 NEX 97
NEX H402 2H40 H 0 0 N N N 16.057 27.406 106.046 0.347 -1.130 3.534 H402 NEX 98
NEX H403 3H40 H 0 0 N N N 15.235 28.084 107.396 0.452 0.645 3.487 H403 NEX 99
NEX H1 H1 H 0 1 N N N 9.769 29.391 98.691 4.280 0.887 12.908 H1 NEX 100
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NEX C1 C2 SING N N 1
NEX C1 C6 SING N N 2
NEX C1 C16 SING N N 3
NEX C1 C17 SING N N 4
NEX C2 C3 SING N N 5
NEX C2 H21 SING N N 6
NEX C2 H22 SING N N 7
NEX C3 C4 SING N N 8
NEX C3 O3 SING N N 9
NEX C3 H3 SING N N 10
NEX C4 C5 SING N N 11
NEX C4 H41 SING N N 12
NEX C4 H42 SING N N 13
NEX C5 C6 SING N N 14
NEX C5 C18 SING N N 15
NEX C5 O4 SING N N 16
NEX C6 C7 DOUB N N 17
NEX C7 C8 DOUB N N 18
NEX C8 C9 SING N N 19
NEX C8 H8 SING N N 20
NEX C9 C10 DOUB N E 21
NEX C9 C19 SING N N 22
NEX C10 C11 SING N N 23
NEX C10 H10 SING N N 24
NEX C11 C12 DOUB N E 25
NEX C11 H11 SING N N 26
NEX C12 C13 SING N N 27
NEX C12 H12 SING N N 28
NEX C13 C14 DOUB N E 29
NEX C13 C20 SING N N 30
NEX C14 C15 SING N N 31
NEX C14 H14 SING N N 32
NEX C15 C35 DOUB N E 33
NEX C15 H15 SING N N 34
NEX C16 H161 SING N N 35
NEX C16 H162 SING N N 36
NEX C16 H163 SING N N 37
NEX C17 H171 SING N N 38
NEX C17 H172 SING N N 39
NEX C17 H173 SING N N 40
NEX C18 H181 SING N N 41
NEX C18 H182 SING N N 42
NEX C18 H183 SING N N 43
NEX C19 H191 SING N N 44
NEX C19 H192 SING N N 45
NEX C19 H193 SING N N 46
NEX C20 H201 SING N N 47
NEX C20 H202 SING N N 48
NEX C20 H203 SING N N 49
NEX O3 HO3 SING N N 50
NEX O4 HO4 SING N N 51
NEX C21 C22 SING N N 52
NEX C21 C26 SING N N 53
NEX C21 C36 SING N N 54
NEX C21 C37 SING N N 55
NEX C22 C23 SING N N 56
NEX C22 H221 SING N N 57
NEX C22 H222 SING N N 58
NEX C23 C24 SING N N 59
NEX C23 O23 SING N N 60
NEX C23 H23 SING N N 61
NEX C24 C25 SING N N 62
NEX C24 H241 SING N N 63
NEX C24 H242 SING N N 64
NEX C25 C26 SING N N 65
NEX C25 C38 SING N N 66
NEX C25 O24 SING N N 67
NEX C26 C27 SING N N 68
NEX C26 O24 SING N N 69
NEX C27 C28 DOUB N E 70
NEX C27 H27 SING N N 71
NEX C28 C29 SING N N 72
NEX C28 H28 SING N N 73
NEX C29 C30 DOUB N Z 74
NEX C29 C39 SING N N 75
NEX C30 C31 SING N N 76
NEX C30 H30 SING N N 77
NEX C31 C32 DOUB N E 78
NEX C31 H31 SING N N 79
NEX C32 C33 SING N N 80
NEX C32 H32 SING N N 81
NEX C33 C34 DOUB N E 82
NEX C33 C40 SING N N 83
NEX C34 C35 SING N N 84
NEX C34 H34 SING N N 85
NEX C35 H35 SING N N 86
NEX C36 H361 SING N N 87
NEX C36 H362 SING N N 88
NEX C36 H363 SING N N 89
NEX C37 H371 SING N N 90
NEX C37 H372 SING N N 91
NEX C37 H373 SING N N 92
NEX C38 H381 SING N N 93
NEX C38 H382 SING N N 94
NEX C38 H383 SING N N 95
NEX C39 H391 SING N N 96
NEX C39 H392 SING N N 97
NEX C39 H393 SING N N 98
NEX C40 H401 SING N N 99
NEX C40 H402 SING N N 100
NEX C40 H403 SING N N 101
NEX O23 H1 SING N N 102
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NEX SMILES ACDLabs 10.04 "OC3CC(\C(=C=C/C(=C/C=C/C(=C/C=C/C=C(/C=C/C=C(\C=C\C12OC2(C)CC(O)CC1(C)C)C)C)C)C)C(O)(C)C3)(C)C"
NEX SMILES_CANONICAL CACTVS 3.341 "CC(=C/C=C/C=C(C)/C=C/C=C(C)/[CH]=[C@@]=[C]1C(C)(C)C[C@H](O)C[C@@]1(C)O)\C=C\C=C(C)/C=C/[C@@]23O[C@]2(C)C[C@@H](O)CC3(C)C"
NEX SMILES CACTVS 3.341 "CC(=CC=CC=C(C)C=CC=C(C)[CH]=[C]=[C]1C(C)(C)C[CH](O)C[C]1(C)O)C=CC=C(C)C=C[C]23O[C]2(C)C[CH](O)CC3(C)C"
NEX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C\C(=C/C=C/C=C(\C)/C=C/C=C(C)C=C=C1C(C[C@@H](C[C@@]1(C)O)O)(C)C)\C=C\C=C(\C)/C=C/[C@]23C(C[C@@H](C[C@]2(O3)C)O)(C)C"
NEX SMILES "OpenEye OEToolkits" 1.5.0 "CC(=CC=CC=C(C)C=CC=C(C)C=C=C1C(CC(CC1(C)O)O)(C)C)C=CC=C(C)C=CC23C(CC(CC2(O3)C)O)(C)C"
NEX InChI InChI 1.03 "InChI=1S/C40H56O4/c1-29(17-13-19-31(3)21-22-35-36(5,6)25-33(41)27-38(35,9)43)15-11-12-16-30(2)18-14-20-32(4)23-24-40-37(7,8)26-34(42)28-39(40,10)44-40/h11-21,23-24,33-34,41-43H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,24-23+,29-15+,30-16+,31-19+,32-20-/t22-,33-,34-,38+,39+,40-/m0/s1"
NEX InChIKey InChI 1.03 PGYAYSRVSAJXTE-OQASCVKESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NEX "SYSTEMATIC NAME" ACDLabs 10.04 "(3S,3'S,5R,5'R,6R,6'S,8R,9'cis)-6,7-didehydro-5,5',6,6'-tetrahydro-5',6'-epoxy-beta,beta-carotene-3,3',5-triol"
NEX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1R,3S)-6-[(5E,7E,9E,11E,13E,15Z,17E)-18-[(1R,3S,6S)-3-hydroxy-1,5,5-trimethyl-7-oxabicyclo[4.1.0]heptan-6-yl]-3,7,12,16-tetramethyl-octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]-1,5,5-trimethyl-cyclohexane-1,3-diol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NEX "Create component" 2003-12-22 RCSB
NEX "Modify descriptor" 2011-06-04 RCSB
NEX "Modify synonyms" 2020-05-27 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 NEX
;(3S,5R,6R,3'S,5'R,6'S)-5',6'-EPOXY-6,7-DIDEHYDRO- 5,6,5',6'-TETRAHYDRO-BETA,BETA-CAROTENE-3,5,3'-TRIOL
;
? ?
2 NEX "9'-CIS-NEOXANTHIN" ? ?
#