data_NFD # _chem_comp.id NFD _chem_comp.name "Nicotinamide 2-fluoro-adenine dinucleotide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H26 F N7 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 2-fluoro-NAD+ _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-14 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 681.416 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NFD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3I9J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NFD PA AP P 0 1 N N N 1.511 2.012 19.371 0.693 2.895 1.168 AP NFD 1 NFD PN NP P 0 1 N N N 0.547 4.667 20.238 -1.989 3.285 -0.032 NP NFD 2 NFD N1A AN1 N 0 1 Y N N 9.248 5.651 22.001 9.243 -2.434 -2.096 AN1 NFD 3 NFD O1A AO1 O 0 1 N N N 0.943 1.036 18.342 0.212 3.242 2.524 AO1 NFD 4 NFD NN1 NN1 N 1 1 Y N N 3.221 8.245 17.334 -6.780 -1.438 -0.036 NN1 NFD 5 NFD O1N NO1 O 0 1 N N N -0.938 5.171 20.343 -2.562 3.779 1.315 NO1 NFD 6 NFD C2A AC2 C 0 1 Y N N 8.439 4.564 22.099 8.682 -2.994 -1.037 AC2 NFD 7 NFD F2A AF2 F 0 1 N N N 8.006 4.151 23.298 9.175 -4.167 -0.583 AF2 NFD 8 NFD O2A AO2 O 0 1 N N N 1.759 1.658 20.779 1.522 4.133 0.559 AO2 NFD 9 NFD C2N NC2 C 0 1 Y N N 4.009 7.922 16.282 -7.101 -2.690 -0.287 NC2 NFD 10 NFD O2N NO2 O -1 1 N N N 1.500 4.687 21.446 -1.803 4.487 -0.984 NO2 NFD 11 NFD O3 O3 O 0 1 N N N 0.381 3.248 19.408 -0.567 2.573 0.219 O3 NFD 12 NFD N3A AN3 N 0 1 Y N N 8.039 3.878 21.006 7.660 -2.449 -0.408 AN3 NFD 13 NFD C3N NC3 C 0 1 Y N N 5.323 7.423 16.494 -7.624 -3.503 0.719 NC3 NFD 14 NFD C4A AC4 C 0 1 Y N N 8.440 4.242 19.758 7.146 -1.295 -0.823 AC4 NFD 15 NFD C4N NC4 C 0 1 Y N N 5.792 7.241 17.780 -7.801 -2.966 1.999 NC4 NFD 16 NFD C5A AC5 C 0 1 Y N N 9.274 5.355 19.629 7.707 -0.662 -1.944 AC5 NFD 17 NFD C5N NC5 C 0 1 Y N N 4.951 7.566 18.848 -7.448 -1.644 2.211 NC5 NFD 18 NFD C6A AC6 C 0 1 Y N N 9.671 6.067 20.781 8.796 -1.281 -2.582 AC6 NFD 19 NFD N6A AN6 N 0 1 N N N 10.478 7.154 20.716 9.389 -0.703 -3.691 AN6 NFD 20 NFD C6N NC6 C 0 1 Y N N 3.669 8.065 18.596 -6.936 -0.904 1.160 NC6 NFD 21 NFD N7A AN7 N 0 1 Y N N 9.519 5.484 18.295 7.006 0.479 -2.151 AN7 NFD 22 NFD C7N NC7 C 0 1 N N N 6.264 7.025 15.355 -7.986 -4.909 0.437 NC7 NFD 23 NFD NN7 NN7 N 0 1 N N N 5.982 7.438 14.103 -8.490 -5.684 1.418 NN7 NFD 24 NFD O7N NO7 O 0 1 N N N 7.357 6.252 15.538 -7.828 -5.365 -0.678 NO7 NFD 25 NFD C8A AC8 C 0 1 Y N N 8.857 4.500 17.624 6.073 0.584 -1.250 AC8 NFD 26 NFD N9A AN9 N 0 1 Y N N 8.186 3.740 18.519 6.118 -0.487 -0.407 AN9 NFD 27 NFD "C1'A" AC1* C 0 0 N N R 7.366 2.517 18.219 5.231 -0.731 0.733 AC1* NFD 28 NFD "C1'N" NC1* C 0 0 N N R 1.835 8.742 17.212 -6.227 -0.615 -1.116 NC1* NFD 29 NFD "C2'A" AC2* C 0 0 N N R 7.598 1.645 19.447 5.874 -0.213 2.045 AC2* NFD 30 NFD "O2'A" AO2* O 0 0 N N N 8.406 0.496 19.123 6.726 -1.204 2.622 AO2* NFD 31 NFD "C2'N" NC2* C 0 0 N N R 1.193 8.232 15.950 -7.302 0.353 -1.658 NC2* NFD 32 NFD "O2'N" NO2* O 0 0 N N N 0.769 9.456 15.369 -7.893 -0.170 -2.849 NO2* NFD 33 NFD "C3'A" AC3* C 0 0 N N S 6.217 1.282 19.959 4.634 0.037 2.937 AC3* NFD 34 NFD "O3'A" AO3* O 0 0 N N N 6.171 -0.150 20.061 4.417 -1.070 3.814 AO3* NFD 35 NFD "C3'N" NC3* C 0 0 N N S -0.046 7.381 16.384 -6.518 1.649 -1.966 NC3* NFD 36 NFD "O3'N" NO3* O 0 0 N N N -1.286 8.108 16.442 -6.601 1.965 -3.357 NO3* NFD 37 NFD "C4'A" AC4* C 0 0 N N R 5.200 1.922 18.985 3.469 0.169 1.937 AC4* NFD 38 NFD "O4'A" AO4* O 0 0 N N N 5.946 2.706 18.046 4.025 0.054 0.616 AO4* NFD 39 NFD "C4'N" NC4* C 0 0 N N R 0.208 7.052 17.844 -5.063 1.310 -1.574 NC4* NFD 40 NFD "O4'N" NO4* O 0 0 N N N 0.972 8.213 18.249 -5.180 0.241 -0.610 NO4* NFD 41 NFD "C5'A" AC5* C 0 0 N N N 4.146 2.820 19.669 2.794 1.532 2.100 AC5* NFD 42 NFD "O5'A" AO5* O 0 0 N N N 2.922 2.768 18.916 1.646 1.600 1.252 AO5* NFD 43 NFD "C5'N" NC5* C 0 0 N N N 0.993 5.756 17.862 -4.385 2.526 -0.941 NC5* NFD 44 NFD "O5'N" NO5* O 0 0 N N N 1.475 5.456 19.160 -3.009 2.229 -0.693 NO5* NFD 45 NFD HAO2 HAO2 H 0 0 N N N 1.513 0.752 20.926 1.868 3.975 -0.330 HAO2 NFD 46 NFD HC2 HC2 H 0 1 N N N 3.637 8.044 15.275 -6.959 -3.091 -1.280 HC2 NFD 47 NFD HC4 HC4 H 0 1 N N N 6.786 6.856 17.956 -8.204 -3.566 2.802 HC4 NFD 48 NFD HC5 HC5 H 0 1 N N N 5.290 7.432 19.865 -7.571 -1.196 3.185 HC5 NFD 49 NFD HAN6 HAN6 H 0 0 N N N 10.646 7.501 21.639 9.054 0.139 -4.036 HAN6 NFD 50 NFD HANA HANA H 0 0 N N N 11.347 6.899 20.293 10.139 -1.140 -4.122 HANA NFD 51 NFD HC6 HC6 H 0 1 N N N 3.024 8.311 19.427 -6.659 0.127 1.322 HC6 NFD 52 NFD HNN7 HNN7 H 0 0 N N N 6.575 7.171 13.343 -8.616 -5.320 2.308 HNN7 NFD 53 NFD HNNA HNNA H 0 0 N N N 5.180 8.011 13.934 -8.727 -6.607 1.233 HNNA NFD 54 NFD HC8 HC8 H 0 1 N N N 8.867 4.352 16.554 5.367 1.398 -1.180 HC8 NFD 55 NFD "HC1'" HC1* H 0 0 N N N 7.680 2.108 17.247 4.995 -1.792 0.814 HC1* NFD 56 NFD HC1A HC1A H 0 0 N N N 1.923 9.838 17.255 -5.846 -1.248 -1.917 HC1A NFD 57 NFD "HC2'" HC2* H 0 0 N N N 8.165 2.169 20.230 6.421 0.714 1.871 HC2* NFD 58 NFD "HO2'" HO2* H 0 0 N N N 8.536 -0.030 19.903 7.151 -0.927 3.445 HO2* NFD 59 NFD HC2A HC2A H 0 0 N N N 1.817 7.615 15.286 -8.065 0.539 -0.902 HC2A NFD 60 NFD HO2A HO2A H 0 0 N N N 0.335 9.281 14.542 -8.575 0.398 -3.232 HO2A NFD 61 NFD "HC3'" HC3* H 0 0 N N N 5.970 1.666 20.960 4.754 0.958 3.509 HC3* NFD 62 NFD "HO3'" HO3* H 0 0 N N N 5.317 -0.418 20.380 5.147 -1.235 4.427 HO3* NFD 63 NFD HC3A HC3A H 0 0 N N N -0.143 6.554 15.665 -6.895 2.476 -1.364 HC3A NFD 64 NFD HO3A HO3A H 0 0 N N N -1.984 7.523 16.712 -7.502 2.128 -3.671 HO3A NFD 65 NFD "HC4'" HC4* H 0 0 N N N 4.635 1.107 18.509 2.743 -0.627 2.106 HC4* NFD 66 NFD HC4A HC4A H 0 0 N N N -0.657 6.891 18.504 -4.503 0.975 -2.447 HC4A NFD 67 NFD "HC5'" HC5* H 0 0 N N N 3.964 2.461 20.693 2.487 1.663 3.138 HC5* NFD 68 NFD HC5A HC5A H 0 0 N N N 4.513 3.856 19.706 3.495 2.320 1.826 HC5A NFD 69 NFD HC5B HC5B H 0 0 N N N 0.335 4.939 17.531 -4.456 3.376 -1.620 HC5B NFD 70 NFD HC5C HC5C H 0 0 N N N 1.850 5.852 17.180 -4.879 2.770 -0.001 HC5C NFD 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NFD O1A PA DOUB N N 1 NFD "O5'A" PA SING N N 2 NFD PA O3 SING N N 3 NFD PA O2A SING N N 4 NFD "O5'N" PN SING N N 5 NFD O3 PN SING N N 6 NFD PN O1N DOUB N N 7 NFD PN O2N SING N N 8 NFD C6A N1A DOUB Y N 9 NFD N1A C2A SING Y N 10 NFD C2N NN1 DOUB Y N 11 NFD "C1'N" NN1 SING N N 12 NFD NN1 C6N SING Y N 13 NFD N3A C2A DOUB Y N 14 NFD C2A F2A SING N N 15 NFD O2A HAO2 SING N N 16 NFD C2N C3N SING Y N 17 NFD C2N HC2 SING N N 18 NFD C4A N3A SING Y N 19 NFD C7N C3N SING N N 20 NFD C3N C4N DOUB Y N 21 NFD N9A C4A SING Y N 22 NFD C5A C4A DOUB Y N 23 NFD C4N C5N SING Y N 24 NFD C4N HC4 SING N N 25 NFD N7A C5A SING Y N 26 NFD C5A C6A SING Y N 27 NFD C6N C5N DOUB Y N 28 NFD C5N HC5 SING N N 29 NFD N6A C6A SING N N 30 NFD N6A HAN6 SING N N 31 NFD N6A HANA SING N N 32 NFD C6N HC6 SING N N 33 NFD C8A N7A DOUB Y N 34 NFD NN7 C7N SING N N 35 NFD C7N O7N DOUB N N 36 NFD NN7 HNN7 SING N N 37 NFD NN7 HNNA SING N N 38 NFD C8A N9A SING Y N 39 NFD C8A HC8 SING N N 40 NFD "C1'A" N9A SING N N 41 NFD "O4'A" "C1'A" SING N N 42 NFD "C1'A" "C2'A" SING N N 43 NFD "C1'A" "HC1'" SING N N 44 NFD "C2'N" "C1'N" SING N N 45 NFD "C1'N" "O4'N" SING N N 46 NFD "C1'N" HC1A SING N N 47 NFD "O2'A" "C2'A" SING N N 48 NFD "C2'A" "C3'A" SING N N 49 NFD "C2'A" "HC2'" SING N N 50 NFD "O2'A" "HO2'" SING N N 51 NFD "O2'N" "C2'N" SING N N 52 NFD "C2'N" "C3'N" SING N N 53 NFD "C2'N" HC2A SING N N 54 NFD "O2'N" HO2A SING N N 55 NFD "C4'A" "C3'A" SING N N 56 NFD "C3'A" "O3'A" SING N N 57 NFD "C3'A" "HC3'" SING N N 58 NFD "O3'A" "HO3'" SING N N 59 NFD "C3'N" "O3'N" SING N N 60 NFD "C3'N" "C4'N" SING N N 61 NFD "C3'N" HC3A SING N N 62 NFD "O3'N" HO3A SING N N 63 NFD "O4'A" "C4'A" SING N N 64 NFD "C4'A" "C5'A" SING N N 65 NFD "C4'A" "HC4'" SING N N 66 NFD "C4'N" "C5'N" SING N N 67 NFD "C4'N" "O4'N" SING N N 68 NFD "C4'N" HC4A SING N N 69 NFD "O5'A" "C5'A" SING N N 70 NFD "C5'A" "HC5'" SING N N 71 NFD "C5'A" HC5A SING N N 72 NFD "C5'N" "O5'N" SING N N 73 NFD "C5'N" HC5B SING N N 74 NFD "C5'N" HC5C SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NFD SMILES_CANONICAL CACTVS 3.352 "NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)nc(F)nc45)[C@@H](O)[C@H]2O" NFD SMILES CACTVS 3.352 "NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)nc(F)nc45)[CH](O)[CH]2O" NFD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4nc(nc5N)F)O)O)O)O)C(=O)N" NFD SMILES "OpenEye OEToolkits" 1.7.0 "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4nc(nc5N)F)O)O)O)O)C(=O)N" NFD InChI InChI 1.03 "InChI=1S/C21H26FN7O14P2/c22-21-26-16(23)11-18(27-21)29(7-25-11)20-15(33)13(31)10(42-20)6-40-45(37,38)43-44(35,36)39-5-9-12(30)14(32)19(41-9)28-3-1-2-8(4-28)17(24)34/h1-4,7,9-10,12-15,19-20,30-33H,5-6H2,(H5-,23,24,26,27,34,35,36,37,38)/t9-,10-,12-,13-,14-,15-,19-,20-/m1/s1" NFD InChIKey InChI 1.03 JDJGJQAJEVFTBI-NAJQWHGHSA-N # _pdbx_chem_comp_identifier.comp_id NFD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "[(2R,3S,4R,5R)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3S,4R,5R)-5-(6-azanyl-2-fluoro-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NFD "Create component" 2009-07-14 PDBJ NFD "Modify aromatic_flag" 2011-06-04 RCSB NFD "Modify descriptor" 2011-06-04 RCSB NFD "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NFD _pdbx_chem_comp_synonyms.name 2-fluoro-NAD+ _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##