data_NFG # _chem_comp.id NFG _chem_comp.name "2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H13 F N2 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucoside; 2,4-dinitrophenyl 2-deoxy-2-fluoro-D-glucoside; 2,4-dinitrophenyl 2-deoxy-2-fluoro-glucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-07-07 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.238 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NFG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1E4I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 NFG "2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucoside" PDB ? 2 NFG "2,4-dinitrophenyl 2-deoxy-2-fluoro-D-glucoside" PDB ? 3 NFG "2,4-dinitrophenyl 2-deoxy-2-fluoro-glucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NFG C1 C1 C 0 1 N N S 17.530 42.426 36.363 -1.335 -0.535 -0.250 C1 NFG 1 NFG O1 O1 O 0 1 N N N 18.064 43.429 37.183 -0.244 -1.396 0.081 O1 NFG 2 NFG C2 C2 C 0 1 N N R 16.900 43.133 35.203 -2.636 -1.340 -0.243 C2 NFG 3 NFG F F F 0 1 N N N 15.879 44.008 35.665 -2.543 -2.389 -1.163 F NFG 4 NFG C3 C3 C 0 1 N N S 16.352 42.124 34.225 -3.797 -0.416 -0.631 C3 NFG 5 NFG O3 O3 O 0 1 N N N 15.923 42.819 33.046 -5.035 -1.115 -0.486 O3 NFG 6 NFG C4 C4 C 0 1 N N S 17.410 41.100 33.863 -3.780 0.806 0.294 C4 NFG 7 NFG O4 O4 O 0 1 N N N 16.793 40.076 33.081 -4.760 1.750 -0.142 O4 NFG 8 NFG C5 C5 C 0 1 N N R 18.024 40.481 35.106 -2.392 1.449 0.246 C5 NFG 9 NFG C6 C6 C 0 1 N N N 19.175 39.598 34.752 -2.376 2.691 1.139 C6 NFG 10 NFG O6 O6 O 0 1 N N N 19.770 38.990 35.894 -1.121 3.360 1.002 O6 NFG 11 NFG O5 O5 O 0 1 N N N 18.551 41.532 35.948 -1.414 0.520 0.707 O5 NFG 12 NFG C11 C11 C 0 1 Y N N 18.425 43.150 38.460 0.892 -0.661 -0.056 C11 NFG 13 NFG C12 C12 C 0 1 Y N N 19.000 44.185 39.206 2.127 -1.236 0.207 C12 NFG 14 NFG N1 N1 N 1 1 N N N 19.207 45.511 38.636 2.210 -2.652 0.631 N1 NFG 15 NFG O11 O11 O -1 1 N N N 19.319 45.639 37.428 3.295 -3.159 0.852 O11 NFG 16 NFG O12 O12 O 0 1 N N N 19.273 46.491 39.374 1.193 -3.310 0.759 O12 NFG 17 NFG C13 C13 C 0 1 Y N N 19.394 43.985 40.511 3.280 -0.489 0.061 C13 NFG 18 NFG C14 C14 C 0 1 Y N N 19.225 42.772 41.091 3.203 0.833 -0.335 C14 NFG 19 NFG N2 N2 N 1 1 N N N 19.586 42.420 42.437 4.439 1.633 -0.485 N2 NFG 20 NFG O21 O21 O -1 1 N N N 19.082 41.440 42.974 4.373 2.798 -0.834 O21 NFG 21 NFG O22 O22 O 0 1 N N N 20.416 43.101 43.025 5.524 1.126 -0.259 O22 NFG 22 NFG C15 C15 C 0 1 Y N N 18.656 41.737 40.373 1.973 1.410 -0.592 C15 NFG 23 NFG C16 C16 C 0 1 Y N N 18.258 41.925 39.066 0.817 0.666 -0.453 C16 NFG 24 NFG H1 H1 H 0 1 N N N 16.774 41.805 36.898 -1.175 -0.112 -1.242 H1 NFG 25 NFG H2 H2 H 0 1 N N N 17.669 43.745 34.677 -2.810 -1.744 0.755 H2 NFG 26 NFG H3 H3 H 0 1 N N N 15.493 41.585 34.689 -3.678 -0.094 -1.666 H3 NFG 27 NFG HO3 H3O1 H 0 1 N Y N 15.577 42.183 32.430 -4.995 -1.880 -1.075 HO3 NFG 28 NFG H4 H4 H 0 1 N N N 18.223 41.603 33.290 -4.003 0.494 1.315 H4 NFG 29 NFG HO4 H4O1 H 0 1 N Y N 17.455 39.434 32.854 -5.616 1.302 -0.103 HO4 NFG 30 NFG H5 H5 H 0 1 N N N 17.230 39.890 35.620 -2.163 1.738 -0.780 H5 NFG 31 NFG H61 H62 H 0 1 N N N 18.875 38.831 34.000 -3.180 3.364 0.841 H61 NFG 32 NFG H62 H61 H 0 1 N N N 19.934 40.151 34.151 -2.518 2.393 2.178 H62 NFG 33 NFG HO6 H6 H 0 1 N Y N 20.502 38.428 35.668 -1.152 4.135 1.580 HO6 NFG 34 NFG H13 H13 H 0 1 N N N 19.848 44.802 41.096 4.242 -0.937 0.261 H13 NFG 35 NFG H15 H15 H 0 1 N N N 18.518 40.751 40.847 1.915 2.443 -0.901 H15 NFG 36 NFG H16 H16 H 0 1 N N N 17.804 41.092 38.503 -0.143 1.117 -0.654 H16 NFG 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NFG C1 O1 SING N N 1 NFG C1 C2 SING N N 2 NFG C1 O5 SING N N 3 NFG C1 H1 SING N N 4 NFG O1 C11 SING N N 5 NFG C2 F SING N N 6 NFG C2 C3 SING N N 7 NFG C2 H2 SING N N 8 NFG C3 O3 SING N N 9 NFG C3 C4 SING N N 10 NFG C3 H3 SING N N 11 NFG O3 HO3 SING N N 12 NFG C4 O4 SING N N 13 NFG C4 C5 SING N N 14 NFG C4 H4 SING N N 15 NFG O4 HO4 SING N N 16 NFG C5 C6 SING N N 17 NFG C5 O5 SING N N 18 NFG C5 H5 SING N N 19 NFG C6 O6 SING N N 20 NFG C6 H61 SING N N 21 NFG C6 H62 SING N N 22 NFG O6 HO6 SING N N 23 NFG C11 C12 DOUB Y N 24 NFG C11 C16 SING Y N 25 NFG C12 N1 SING N N 26 NFG C12 C13 SING Y N 27 NFG N1 O11 SING N N 28 NFG N1 O12 DOUB N N 29 NFG C13 C14 DOUB Y N 30 NFG C13 H13 SING N N 31 NFG C14 N2 SING N N 32 NFG C14 C15 SING Y N 33 NFG N2 O21 SING N N 34 NFG N2 O22 DOUB N N 35 NFG C15 C16 DOUB Y N 36 NFG C15 H15 SING N N 37 NFG C16 H16 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NFG SMILES ACDLabs 10.04 "[O-][N+](=O)c2ccc(OC1OC(C(O)C(O)C1F)CO)c([N+]([O-])=O)c2" NFG SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@@H](Oc2ccc(cc2[N+]([O-])=O)[N+]([O-])=O)[C@H](F)[C@@H](O)[C@@H]1O" NFG SMILES CACTVS 3.341 "OC[CH]1O[CH](Oc2ccc(cc2[N+]([O-])=O)[N+]([O-])=O)[CH](F)[CH](O)[CH]1O" NFG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1[N+](=O)[O-])[N+](=O)[O-])O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)F" NFG SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1[N+](=O)[O-])[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O)F" NFG InChI InChI 1.03 "InChI=1S/C12H13FN2O9/c13-9-11(18)10(17)8(4-16)24-12(9)23-7-2-1-5(14(19)20)3-6(7)15(21)22/h1-3,8-12,16-18H,4H2/t8-,9-,10-,11-,12-/m1/s1" NFG InChIKey InChI 1.03 UFSBFVZQJZMIOU-LZQZFOIKSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NFG "SYSTEMATIC NAME" ACDLabs 10.04 "2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside" NFG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4S,5R,6S)-6-(2,4-dinitrophenoxy)-5-fluoro-2-(hydroxymethyl)oxane-3,4-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support NFG "CARBOHYDRATE ISOMER" D PDB ? NFG "CARBOHYDRATE RING" pyranose PDB ? NFG "CARBOHYDRATE ANOMER" beta PDB ? NFG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NFG "Create component" 2000-07-07 EBI NFG "Modify descriptor" 2011-06-04 RCSB NFG "Other modification" 2020-07-03 RCSB NFG "Modify name" 2020-07-17 RCSB NFG "Modify synonyms" 2020-07-17 RCSB NFG "Modify internal type" 2020-07-17 RCSB NFG "Modify linking type" 2020-07-17 RCSB NFG "Modify atom id" 2020-07-17 RCSB NFG "Modify component atom id" 2020-07-17 RCSB NFG "Modify leaving atom flag" 2020-07-17 RCSB ##