data_NGC # _chem_comp.id NGC _chem_comp.name "N-glycolyl-alpha-neuraminic acid" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C11 H19 N O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;N-glycolylneuraminic acid; sialic acid; 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-07-25 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.269 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NGC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3DWP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 NGC "N-glycolylneuraminic acid" PDB ? 2 NGC "sialic acid" PDB ? 3 NGC "3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NGC O9 O8 O 0 1 N N N -41.457 -12.653 2.096 3.805 3.745 -0.103 O9 NGC 1 NGC C9 C8 C 0 1 N N N -40.567 -12.828 0.988 2.412 3.444 -0.215 C9 NGC 2 NGC C8 C7 C 0 1 N N R -39.311 -11.953 1.138 2.191 1.952 0.040 C8 NGC 3 NGC O8 O7 O 0 1 N N N -39.673 -10.579 1.343 2.537 1.643 1.391 O8 NGC 4 NGC C7 C6 C 0 1 N N R -38.400 -12.424 2.279 0.720 1.606 -0.202 C7 NGC 5 NGC O7 O6 O 0 1 N N N -37.657 -13.572 1.839 0.374 1.915 -1.554 O7 NGC 6 NGC C6 C5 C 0 1 N N R -37.421 -11.306 2.679 0.498 0.114 0.053 C6 NGC 7 NGC O6 O5 O 0 1 N N N -36.585 -11.103 1.502 1.402 -0.646 -0.752 O6 NGC 8 NGC C2 C1 C 0 1 N N R -35.619 -10.021 1.556 1.296 -2.060 -0.571 C2 NGC 9 NGC C1 C9 C 0 1 N N N -36.251 -8.606 1.462 1.557 -2.403 0.873 C1 NGC 10 NGC O1B O9B O 0 1 N N N -37.435 -8.514 1.067 0.714 -1.976 1.827 O1B NGC 11 NGC O1A O9A O 0 1 N N N -35.526 -7.642 1.767 2.524 -3.062 1.173 O1A NGC 12 NGC O2 O1 O 0 1 N Y N -34.788 -10.203 0.414 2.257 -2.719 -1.398 O2 NGC 13 NGC C3 C2 C 0 1 N N N -34.714 -10.144 2.809 -0.112 -2.519 -0.959 C3 NGC 14 NGC C4 C3 C 0 1 N N S -35.535 -10.358 4.089 -1.138 -1.763 -0.109 C4 NGC 15 NGC O4 O3 O 0 1 N N N -34.637 -10.593 5.176 -2.458 -2.132 -0.515 O4 NGC 16 NGC C5 C4 C 0 1 N N R -36.557 -11.515 3.952 -0.942 -0.258 -0.310 C5 NGC 17 NGC N5 N4 N 0 1 N N N -37.410 -11.590 5.168 -1.869 0.477 0.555 N5 NGC 18 NGC C10 C10 C 0 1 N N N -37.472 -12.652 5.991 -3.127 0.723 0.138 C10 NGC 19 NGC O10 O10 O 0 1 N N N -36.840 -13.704 5.856 -3.491 0.337 -0.952 O10 NGC 20 NGC C11 C11 C 0 1 N N N -38.415 -12.480 7.181 -4.081 1.478 1.027 C11 NGC 21 NGC O11 O11 O 0 1 N N N -38.778 -11.102 7.347 -5.342 1.611 0.368 O11 NGC 22 NGC HO9 HO8 H 0 1 N Y N -42.222 -13.203 1.978 4.019 4.676 -0.253 HO9 NGC 23 NGC H91 H8 H 0 1 N N N -40.262 -13.884 0.940 1.855 4.025 0.520 H91 NGC 24 NGC H92 H8A H 0 1 N N N -41.090 -12.544 0.063 2.065 3.697 -1.217 H92 NGC 25 NGC H8 H7 H 0 1 N N N -38.746 -12.050 0.199 2.816 1.371 -0.637 H8 NGC 26 NGC HO8 HO7 H 0 1 N Y N -38.886 -10.054 1.433 2.018 2.125 2.050 HO8 NGC 27 NGC H7 H6 H 0 1 N N N -39.018 -12.683 3.151 0.094 2.187 0.475 H7 NGC 28 NGC HO7 HO6 H 0 1 N Y N -37.090 -13.870 2.540 0.892 1.433 -2.212 HO7 NGC 29 NGC H6 H5 H 0 1 N N N -38.019 -10.432 2.978 0.676 -0.105 1.106 H6 NGC 30 NGC HO1B HO9B H 0 0 N N N -37.689 -7.599 1.038 0.923 -2.221 2.739 HO1B NGC 31 NGC HO2 HO1 H 0 1 N Y N -34.475 -9.359 0.112 3.174 -2.475 -1.208 HO2 NGC 32 NGC H31 H2 H 0 1 N N N -34.041 -11.004 2.674 -0.286 -2.308 -2.014 H31 NGC 33 NGC H32 H2A H 0 1 N N N -34.131 -9.217 2.915 -0.208 -3.590 -0.780 H32 NGC 34 NGC H4 H3 H 0 1 N N N -36.127 -9.451 4.279 -0.997 -2.014 0.942 H4 NGC 35 NGC HO4 HO3 H 0 1 N Y N -35.134 -10.727 5.975 -2.650 -3.075 -0.421 HO4 NGC 36 NGC H5 H4 H 0 1 N N N -36.017 -12.468 3.853 -1.133 -0.001 -1.352 H5 NGC 37 NGC HN5 HN4 H 0 1 N N N -37.976 -10.796 5.389 -1.578 0.785 1.427 HN5 NGC 38 NGC H111 H11 H 0 0 N N N -39.325 -13.072 7.006 -4.215 0.933 1.962 H111 NGC 39 NGC H112 H11A H 0 0 N N N -37.910 -12.830 8.093 -3.675 2.467 1.238 H112 NGC 40 NGC HO11 HO11 H 0 0 N N N -39.363 -11.016 8.090 -6.007 2.088 0.884 HO11 NGC 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NGC O9 C9 SING N N 1 NGC C9 C8 SING N N 2 NGC C8 O8 SING N N 3 NGC C8 C7 SING N N 4 NGC C7 O7 SING N N 5 NGC C7 C6 SING N N 6 NGC C6 O6 SING N N 7 NGC C6 C5 SING N N 8 NGC O6 C2 SING N N 9 NGC C2 C1 SING N N 10 NGC C2 O2 SING N N 11 NGC C2 C3 SING N N 12 NGC C1 O1B SING N N 13 NGC C1 O1A DOUB N N 14 NGC C3 C4 SING N N 15 NGC C4 O4 SING N N 16 NGC C4 C5 SING N N 17 NGC C5 N5 SING N N 18 NGC N5 C10 SING N N 19 NGC C10 O10 DOUB N N 20 NGC C10 C11 SING N N 21 NGC C11 O11 SING N N 22 NGC O9 HO9 SING N N 23 NGC C9 H91 SING N N 24 NGC C9 H92 SING N N 25 NGC C8 H8 SING N N 26 NGC O8 HO8 SING N N 27 NGC C7 H7 SING N N 28 NGC O7 HO7 SING N N 29 NGC C6 H6 SING N N 30 NGC O1B HO1B SING N N 31 NGC O2 HO2 SING N N 32 NGC C3 H31 SING N N 33 NGC C3 H32 SING N N 34 NGC C4 H4 SING N N 35 NGC O4 HO4 SING N N 36 NGC C5 H5 SING N N 37 NGC N5 HN5 SING N N 38 NGC C11 H111 SING N N 39 NGC C11 H112 SING N N 40 NGC O11 HO11 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NGC SMILES ACDLabs 12.01 "O=C(O)C1(O)OC(C(NC(=O)CO)C(O)C1)C(O)C(O)CO" NGC InChI InChI 1.03 "InChI=1S/C11H19NO10/c13-2-5(16)8(18)9-7(12-6(17)3-14)4(15)1-11(21,22-9)10(19)20/h4-5,7-9,13-16,18,21H,1-3H2,(H,12,17)(H,19,20)/t4-,5+,7+,8+,9+,11+/m0/s1" NGC InChIKey InChI 1.03 FDJKUWYYUZCUJX-VTERZIIISA-N NGC SMILES_CANONICAL CACTVS 3.370 "OC[C@@H](O)[C@@H](O)[C@@H]1O[C@](O)(C[C@H](O)[C@H]1NC(=O)CO)C(O)=O" NGC SMILES CACTVS 3.370 "OC[CH](O)[CH](O)[CH]1O[C](O)(C[CH](O)[CH]1NC(=O)CO)C(O)=O" NGC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1[C@@H]([C@H]([C@@H](O[C@]1(C(=O)O)O)[C@@H]([C@@H](CO)O)O)NC(=O)CO)O" NGC SMILES "OpenEye OEToolkits" 1.7.2 "C1C(C(C(OC1(C(=O)O)O)C(C(CO)O)O)NC(=O)CO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NGC "SYSTEMATIC NAME" ACDLabs 12.01 "3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid" NGC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 ;(2R,4S,5R,6R)-2,4-bis(oxidanyl)-5-(2-oxidanylethanoylamino)-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid ; NGC "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DNeup5Gca NGC "COMMON NAME" GMML 1.0 "N-glycolyl-a-D-neuraminic acid" NGC "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Neup5Gc NGC "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Neu5Gc # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support NGC "CARBOHYDRATE ISOMER" D PDB ? NGC "CARBOHYDRATE RING" pyranose PDB ? NGC "CARBOHYDRATE ANOMER" alpha PDB ? NGC "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NGC "Create component" 2008-07-25 PDBJ NGC "Modify descriptor" 2011-06-04 RCSB NGC "Modify synonyms" 2011-06-23 RCSB NGC "Modify leaving atom flag" 2011-06-23 RCSB NGC "Other modification" 2019-08-12 RCSB NGC "Other modification" 2019-12-19 RCSB NGC "Other modification" 2020-07-03 RCSB NGC "Modify name" 2020-07-17 RCSB NGC "Modify synonyms" 2020-07-17 RCSB NGC "Modify atom id" 2020-07-17 RCSB NGC "Modify component atom id" 2020-07-17 RCSB ##