data_NGK # _chem_comp.id NGK _chem_comp.name 2-acetamido-2-deoxy-4-O-sulfo-alpha-D-galactopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H15 N O9 S" _chem_comp.mon_nstd_parent_comp_id A2G _chem_comp.pdbx_synonyms ;2-(ACETYLAMINO)-2-DEOXY-4-O-SULFO-ALPHA-D-GALACTOPYRANOSE; N-acetyl-4-O-sulfo-alpha-D-galactosamine; 2-acetamido-2-deoxy-4-O-sulfo-alpha-D-galactose; 2-acetamido-2-deoxy-4-O-sulfo-D-galactose; 2-acetamido-2-deoxy-4-O-sulfo-galactose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-04-15 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.271 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NGK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1OFL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 NGK "2-(ACETYLAMINO)-2-DEOXY-4-O-SULFO-ALPHA-D-GALACTOPYRANOSE" PDB ? 2 NGK N-acetyl-4-O-sulfo-alpha-D-galactosamine PDB ? 3 NGK 2-acetamido-2-deoxy-4-O-sulfo-alpha-D-galactose PDB ? 4 NGK 2-acetamido-2-deoxy-4-O-sulfo-D-galactose PDB ? 5 NGK 2-acetamido-2-deoxy-4-O-sulfo-galactose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NGK C1 C1 C 0 1 N N S 34.568 9.556 25.708 1.480 0.238 1.557 C1 NGK 1 NGK C2 C2 C 0 1 N N R 35.425 8.896 26.792 -0.032 0.011 1.607 C2 NGK 2 NGK C3 C3 C 0 1 N N R 34.711 9.011 28.144 -0.415 -1.045 0.565 C3 NGK 3 NGK C4 C4 C 0 1 N N R 34.463 10.494 28.420 0.137 -0.612 -0.797 C4 NGK 4 NGK C5 C5 C 0 1 N N R 33.620 11.148 27.322 1.637 -0.339 -0.665 C5 NGK 5 NGK C6 C6 C 0 1 N N N 33.417 12.668 27.524 2.201 0.062 -2.029 C6 NGK 6 NGK C7 C7 C 0 1 N N N 36.947 6.971 26.601 -0.747 0.435 3.897 C7 NGK 7 NGK C8 C8 C 0 1 N N N 37.130 5.597 26.020 -1.140 -0.044 5.271 C8 NGK 8 NGK N2 N N 0 1 N N N 35.738 7.516 26.416 -0.414 -0.454 2.942 N2 NGK 9 NGK O1 O1 O 0 1 N Y N 33.327 8.899 25.627 2.154 -0.994 1.819 O1 NGK 10 NGK O3 O3 O 0 1 N N N 35.548 8.562 29.188 -1.837 -1.160 0.491 O3 NGK 11 NGK O4 O4 O 0 1 N N N 35.757 11.077 28.363 -0.529 0.575 -1.228 O4 NGK 12 NGK O5 O5 O 0 1 N N N 34.275 10.903 26.061 1.855 0.717 0.267 O5 NGK 13 NGK O6 O6 O 0 1 N N N 32.433 12.805 28.535 3.603 0.311 -1.910 O6 NGK 14 NGK O7 O7 O 0 1 N N N 37.871 7.548 27.178 -0.731 1.623 3.652 O7 NGK 15 NGK S S S 0 1 N N N 36.390 12.028 29.530 -1.200 0.246 -2.554 S NGK 16 NGK O1S O1S O 0 1 N N N 35.640 13.243 29.702 -1.788 1.460 -3.001 O1S NGK 17 NGK O2S O2S O 0 1 N N N 37.884 12.286 29.123 -2.362 -0.690 -2.257 O2S NGK 18 NGK O3S O3S O 0 1 N N N 36.394 11.151 30.693 -0.257 -0.527 -3.283 O3S NGK 19 NGK H1 H1 H 0 1 N N N 35.091 9.518 24.724 1.762 0.972 2.312 H1 NGK 20 NGK H2 H2 H 0 1 N N N 36.385 9.459 26.861 -0.548 0.945 1.386 H2 NGK 21 NGK H3 H3 H 0 1 N N N 33.751 8.444 28.134 0.015 -2.006 0.846 H3 NGK 22 NGK H4 H4 H 0 1 N N N 34.000 10.643 29.423 -0.025 -1.407 -1.525 H4 NGK 23 NGK H5 H5 H 0 1 N N N 32.619 10.656 27.303 2.140 -1.240 -0.316 H5 NGK 24 NGK H61 H6C1 H 0 1 N N N 33.165 13.210 26.583 2.035 -0.744 -2.743 H61 NGK 25 NGK H62 H6C2 H 0 1 N N N 34.362 13.216 27.748 1.700 0.965 -2.378 H62 NGK 26 NGK H81 H8C1 H 0 1 N N N 38.137 5.143 26.174 -1.374 0.812 5.902 H81 NGK 27 NGK H82 H8C2 H 0 1 N N N 36.876 5.604 24.934 -2.016 -0.688 5.194 H82 NGK 28 NGK H83 H8C3 H 0 1 N N N 36.339 4.911 26.403 -0.315 -0.604 5.710 H83 NGK 29 NGK HN2 H H 0 1 N N N 35.004 6.946 25.996 -0.427 -1.404 3.139 HN2 NGK 30 NGK HO1 HA H 0 1 N Y N 32.795 9.308 24.955 3.102 -0.808 1.778 HO1 NGK 31 NGK HO3 HB H 0 1 N Y N 35.106 8.633 30.026 -2.142 -1.433 1.367 HO3 NGK 32 NGK HO6 H6 H 0 1 N Y N 32.308 13.739 28.659 3.919 0.561 -2.789 HO6 NGK 33 NGK H2S H2S H 0 1 N N N 38.252 12.839 29.801 -2.781 -0.893 -3.104 H2S NGK 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NGK C1 C2 SING N N 1 NGK C1 O1 SING N N 2 NGK C1 O5 SING N N 3 NGK C1 H1 SING N N 4 NGK C2 C3 SING N N 5 NGK C2 N2 SING N N 6 NGK C2 H2 SING N N 7 NGK C3 C4 SING N N 8 NGK C3 O3 SING N N 9 NGK C3 H3 SING N N 10 NGK C4 C5 SING N N 11 NGK C4 O4 SING N N 12 NGK C4 H4 SING N N 13 NGK C5 C6 SING N N 14 NGK C5 O5 SING N N 15 NGK C5 H5 SING N N 16 NGK C6 O6 SING N N 17 NGK C6 H61 SING N N 18 NGK C6 H62 SING N N 19 NGK C7 C8 SING N N 20 NGK C7 N2 SING N N 21 NGK C7 O7 DOUB N N 22 NGK C8 H81 SING N N 23 NGK C8 H82 SING N N 24 NGK C8 H83 SING N N 25 NGK N2 HN2 SING N N 26 NGK O1 HO1 SING N N 27 NGK O3 HO3 SING N N 28 NGK O4 S SING N N 29 NGK O6 HO6 SING N N 30 NGK S O1S DOUB N N 31 NGK S O2S SING N N 32 NGK S O3S DOUB N N 33 NGK O2S H2S SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NGK SMILES ACDLabs 10.04 "O=S(=O)(O)OC1C(OC(O)C(NC(=O)C)C1O)CO" NGK SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@H]1[C@@H](O)O[C@H](CO)[C@H](O[S](O)(=O)=O)[C@@H]1O" NGK SMILES CACTVS 3.341 "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O[S](O)(=O)=O)[CH]1O" NGK SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1O)CO)OS(=O)(=O)O)O" NGK SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1C(C(C(OC1O)CO)OS(=O)(=O)O)O" NGK InChI InChI 1.03 "InChI=1S/C8H15NO9S/c1-3(11)9-5-6(12)7(18-19(14,15)16)4(2-10)17-8(5)13/h4-8,10,12-13H,2H2,1H3,(H,9,11)(H,14,15,16)/t4-,5-,6-,7+,8+/m1/s1" NGK InChIKey InChI 1.03 WHCJUIFHMJFEFZ-YQXRAVKXSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NGK "SYSTEMATIC NAME" ACDLabs 10.04 "2-(acetylamino)-2-deoxy-4-O-sulfo-alpha-D-galactopyranose" NGK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R,6S)-5-acetamido-4,6-dihydroxy-2-(hydroxymethyl)oxan-3-yl] hydrogen sulfate" NGK "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGalpNAc[4S]a NGK "COMMON NAME" GMML 1.0 N-acetyl-4-sulfo-a-D-galactopyranose NGK "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-GalpNAc4SO3 # _pdbx_chem_comp_related.comp_id NGK _pdbx_chem_comp_related.related_comp_id A2G _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 NGK C1 A2G C1 "Carbohydrate core" 2 NGK C2 A2G C2 "Carbohydrate core" 3 NGK C3 A2G C3 "Carbohydrate core" 4 NGK C4 A2G C4 "Carbohydrate core" 5 NGK C5 A2G C5 "Carbohydrate core" 6 NGK C6 A2G C6 "Carbohydrate core" 7 NGK C7 A2G C7 "Carbohydrate core" 8 NGK C8 A2G C8 "Carbohydrate core" 9 NGK N2 A2G N2 "Carbohydrate core" 10 NGK O1 A2G O1 "Carbohydrate core" 11 NGK O3 A2G O3 "Carbohydrate core" 12 NGK O4 A2G O4 "Carbohydrate core" 13 NGK O5 A2G O5 "Carbohydrate core" 14 NGK O6 A2G O6 "Carbohydrate core" 15 NGK O7 A2G O7 "Carbohydrate core" 16 NGK HN2 A2G HN2 "Carbohydrate core" 17 NGK H1 A2G H1 "Carbohydrate core" 18 NGK H2 A2G H2 "Carbohydrate core" 19 NGK H3 A2G H3 "Carbohydrate core" 20 NGK H4 A2G H4 "Carbohydrate core" 21 NGK H5 A2G H5 "Carbohydrate core" 22 NGK HO6 A2G HO6 "Carbohydrate core" 23 NGK H61 A2G H61 "Carbohydrate core" 24 NGK H62 A2G H62 "Carbohydrate core" 25 NGK H81 A2G H81 "Carbohydrate core" 26 NGK H82 A2G H82 "Carbohydrate core" 27 NGK H83 A2G H83 "Carbohydrate core" 28 NGK HO1 A2G HO1 "Carbohydrate core" 29 NGK HO3 A2G HO3 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support NGK "CARBOHYDRATE ISOMER" D PDB ? NGK "CARBOHYDRATE RING" pyranose PDB ? NGK "CARBOHYDRATE ANOMER" alpha PDB ? NGK "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NGK "Create component" 2003-04-15 EBI NGK "Modify descriptor" 2011-06-04 RCSB NGK "Other modification" 2020-07-03 RCSB NGK "Modify parent residue" 2020-07-17 RCSB NGK "Modify name" 2020-07-17 RCSB NGK "Modify synonyms" 2020-07-17 RCSB NGK "Modify linking type" 2020-07-17 RCSB NGK "Modify atom id" 2020-07-17 RCSB NGK "Modify component atom id" 2020-07-17 RCSB NGK "Modify leaving atom flag" 2020-07-17 RCSB ##