data_NGS # _chem_comp.id NGS _chem_comp.name 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H15 N O9 S" _chem_comp.mon_nstd_parent_comp_id NAG _chem_comp.pdbx_synonyms ;2-(acetylamino)-2-deoxy-6-O-sulfo-beta-D-glucopyranose; N-ACETYL-D-GLUCOSAMINE-6-SULFATE; N-acetyl-6-O-sulfo-beta-D-glucosamine; 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucose; 2-acetamido-2-deoxy-6-O-sulfo-D-glucose; 2-acetamido-2-deoxy-6-O-sulfo-glucose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.271 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NGS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KES _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 NGS "2-(acetylamino)-2-deoxy-6-O-sulfo-beta-D-glucopyranose" PDB ? 2 NGS N-ACETYL-D-GLUCOSAMINE-6-SULFATE PDB ? 3 NGS N-acetyl-6-O-sulfo-beta-D-glucosamine PDB ? 4 NGS 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucose PDB ? 5 NGS 2-acetamido-2-deoxy-6-O-sulfo-D-glucose PDB ? 6 NGS 2-acetamido-2-deoxy-6-O-sulfo-glucose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NGS C1 C1 C 0 1 N N R 0.862 0.315 6.723 1.488 0.902 -0.507 C1 NGS 1 NGS C2 C2 C 0 1 N N R 0.013 -0.888 7.115 2.389 -0.174 0.105 C2 NGS 2 NGS C3 C3 C 0 1 N N R -0.864 -0.553 8.312 1.833 -1.556 -0.251 C3 NGS 3 NGS C4 C4 C 0 1 N N S -0.016 0.000 9.450 0.387 -1.657 0.245 C4 NGS 4 NGS C5 C5 C 0 1 N N R 0.849 1.151 8.950 -0.436 -0.523 -0.372 C5 NGS 5 NGS C6 C6 C 0 1 N N N 1.799 1.670 10.008 -1.867 -0.581 0.165 C6 NGS 6 NGS O1 O1 O 0 1 N Y N 1.737 -0.075 5.717 1.969 2.195 -0.132 O1 NGS 7 NGS O3 O3 O 0 1 N N N -1.548 -1.729 8.748 2.625 -2.566 0.378 O3 NGS 8 NGS O5 O5 O 0 1 N N N 1.654 0.720 7.841 0.153 0.733 -0.028 O5 NGS 9 NGS O6 O6 O 0 1 N N N 2.581 2.764 9.528 -2.664 0.403 -0.497 O6 NGS 10 NGS N2 N N 0 1 N N N -0.812 -1.302 5.959 3.746 -0.039 -0.429 N2 NGS 11 NGS C7 C C 0 1 N N N -0.629 -2.562 5.426 4.611 0.824 0.139 C7 NGS 12 NGS O7 O O 0 1 N N N 0.183 -3.364 5.858 4.267 1.489 1.092 O7 NGS 13 NGS C8 CH3 C 0 1 N N N -1.535 -2.850 4.253 6.008 0.962 -0.412 C8 NGS 14 NGS S S S 0 1 N N N 4.038 2.920 10.170 -4.115 0.436 -0.038 S NGS 15 NGS O7A O7 O 0 1 N N N 4.814 1.724 9.905 -4.501 -0.916 0.168 O7A NGS 16 NGS O8 O8 O 0 1 N N N 3.918 3.109 11.603 -4.140 1.103 1.329 O8 NGS 17 NGS O9 O9 O 0 1 N N N 4.704 4.067 9.585 -4.797 1.312 -0.925 O9 NGS 18 NGS O4 O4 O 0 1 N N N -0.850 0.481 10.502 -0.165 -2.915 -0.145 O4 NGS 19 NGS H1 H1 H 0 1 N N N 0.208 1.136 6.394 1.500 0.811 -1.593 H1 NGS 20 NGS H2 H2 H 0 1 N N N 0.671 -1.721 7.402 2.410 -0.058 1.189 H2 NGS 21 NGS H3 H3 H 0 1 N N N -1.598 0.210 8.014 1.858 -1.692 -1.332 H3 NGS 22 NGS H4 H4 H 0 1 N N N 0.623 -0.812 9.826 0.368 -1.571 1.332 H4 NGS 23 NGS H5 H5 H 0 1 N N N 0.151 1.952 8.663 -0.450 -0.633 -1.457 H5 NGS 24 NGS H61 H6 H 0 1 N N N 1.211 2.010 10.874 -2.285 -1.571 -0.018 H61 NGS 25 NGS H62 H6A H 0 1 N N N 2.483 0.854 10.285 -1.861 -0.382 1.237 H62 NGS 26 NGS HO3 HO3 H 0 1 N Y N -1.700 -2.301 8.005 2.329 -3.469 0.195 HO3 NGS 27 NGS HN2 HN H 0 1 N N N -1.491 -0.679 5.570 4.022 -0.571 -1.192 HN2 NGS 28 NGS H81 HH3 H 0 1 N N N -2.576 -2.920 4.602 6.132 0.290 -1.261 H81 NGS 29 NGS H82 HH3A H 0 1 N N N -1.449 -2.038 3.516 6.170 1.990 -0.735 H82 NGS 30 NGS H83 HH3B H 0 1 N N N -1.240 -3.802 3.787 6.730 0.706 0.363 H83 NGS 31 NGS HO4 HO4 H 0 1 N Y N -0.334 0.588 11.292 -1.081 -3.047 0.137 HO4 NGS 32 NGS HO1 H14 H 0 1 N Y N 1.261 -0.164 4.900 1.445 2.927 -0.486 HO1 NGS 33 NGS H15 H15 H 0 1 N N N 3.892 2.263 12.033 -5.024 1.175 1.715 H15 NGS 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NGS C1 C2 SING N N 1 NGS C1 O1 SING N N 2 NGS C1 O5 SING N N 3 NGS C1 H1 SING N N 4 NGS C2 C3 SING N N 5 NGS C2 N2 SING N N 6 NGS C2 H2 SING N N 7 NGS C3 C4 SING N N 8 NGS C3 O3 SING N N 9 NGS C3 H3 SING N N 10 NGS C4 C5 SING N N 11 NGS C4 O4 SING N N 12 NGS C4 H4 SING N N 13 NGS C5 C6 SING N N 14 NGS C5 O5 SING N N 15 NGS C5 H5 SING N N 16 NGS C6 O6 SING N N 17 NGS C6 H61 SING N N 18 NGS C6 H62 SING N N 19 NGS O3 HO3 SING N N 20 NGS O6 S SING N N 21 NGS N2 C7 SING N N 22 NGS N2 HN2 SING N N 23 NGS C7 O7 DOUB N N 24 NGS C7 C8 SING N N 25 NGS C8 H81 SING N N 26 NGS C8 H82 SING N N 27 NGS C8 H83 SING N N 28 NGS S O7A DOUB N N 29 NGS S O8 SING N N 30 NGS S O9 DOUB N N 31 NGS O4 HO4 SING N N 32 NGS O1 HO1 SING N N 33 NGS O8 H15 SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NGS SMILES ACDLabs 10.04 "O=S(=O)(O)OCC1OC(O)C(NC(=O)C)C(O)C1O" NGS SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@H]1[C@H](O)O[C@H](CO[S](O)(=O)=O)[C@@H](O)[C@@H]1O" NGS SMILES CACTVS 3.341 "CC(=O)N[CH]1[CH](O)O[CH](CO[S](O)(=O)=O)[CH](O)[CH]1O" NGS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)COS(=O)(=O)O)O)O" NGS SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1C(C(C(OC1O)COS(=O)(=O)O)O)O" NGS InChI InChI 1.03 "InChI=1S/C8H15NO9S/c1-3(10)9-5-7(12)6(11)4(18-8(5)13)2-17-19(14,15)16/h4-8,11-13H,2H2,1H3,(H,9,10)(H,14,15,16)/t4-,5-,6-,7-,8-/m1/s1" NGS InChIKey InChI 1.03 WJFVEEAIYIOATH-FMDGEEDCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NGS "SYSTEMATIC NAME" ACDLabs 10.04 "2-(acetylamino)-2-deoxy-6-O-sulfo-beta-D-glucopyranose" NGS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R,6R)-5-acetamido-3,4,6-trihydroxy-oxan-2-yl]methyl hydrogen sulfate" NGS "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGlcpNAc[6S]b NGS "COMMON NAME" GMML 1.0 N-acetyl-6-sulfo-b-D-glucopyranose NGS "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-GlcpNAc6SO3 # _pdbx_chem_comp_related.comp_id NGS _pdbx_chem_comp_related.related_comp_id NAG _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 NGS C7 NAG C7 "Carbohydrate core" 2 NGS C1 NAG C1 "Carbohydrate core" 3 NGS C2 NAG C2 "Carbohydrate core" 4 NGS C3 NAG C3 "Carbohydrate core" 5 NGS C4 NAG C4 "Carbohydrate core" 6 NGS C5 NAG C5 "Carbohydrate core" 7 NGS C6 NAG C6 "Carbohydrate core" 8 NGS C8 NAG C8 "Carbohydrate core" 9 NGS N2 NAG N2 "Carbohydrate core" 10 NGS O7 NAG O7 "Carbohydrate core" 11 NGS O1 NAG O1 "Carbohydrate core" 12 NGS O3 NAG O3 "Carbohydrate core" 13 NGS O4 NAG O4 "Carbohydrate core" 14 NGS O5 NAG O5 "Carbohydrate core" 15 NGS O6 NAG O6 "Carbohydrate core" 16 NGS H1 NAG H1 "Carbohydrate core" 17 NGS HO1 NAG HO1 "Carbohydrate core" 18 NGS H2 NAG H2 "Carbohydrate core" 19 NGS H3 NAG H3 "Carbohydrate core" 20 NGS H4 NAG H4 "Carbohydrate core" 21 NGS H5 NAG H5 "Carbohydrate core" 22 NGS H61 NAG H61 "Carbohydrate core" 23 NGS H62 NAG H62 "Carbohydrate core" 24 NGS H81 NAG H81 "Carbohydrate core" 25 NGS H82 NAG H82 "Carbohydrate core" 26 NGS H83 NAG H83 "Carbohydrate core" 27 NGS HN2 NAG HN2 "Carbohydrate core" 28 NGS HO3 NAG HO3 "Carbohydrate core" 29 NGS HO4 NAG HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support NGS "CARBOHYDRATE ISOMER" D PDB ? NGS "CARBOHYDRATE RING" pyranose PDB ? NGS "CARBOHYDRATE ANOMER" beta PDB ? NGS "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NGS "Create component" 1999-07-08 RCSB NGS "Modify descriptor" 2011-06-04 RCSB NGS "Other modification" 2020-07-03 RCSB NGS "Modify parent residue" 2020-07-17 RCSB NGS "Modify name" 2020-07-17 RCSB NGS "Modify synonyms" 2020-07-17 RCSB NGS "Modify linking type" 2020-07-17 RCSB NGS "Modify atom id" 2020-07-17 RCSB NGS "Modify component atom id" 2020-07-17 RCSB NGS "Modify leaving atom flag" 2020-07-17 RCSB ##