data_NH9 # _chem_comp.id NH9 _chem_comp.name "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl (3R)-4-({3-[(2-{[(1S)-1-{[(2R,3S,4S,5R,6R)-4,5-dihydroxy-6-{[(R)-hydroxy{[(R)-hydroxy{[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)oxolan-2-yl]methoxy}phosphoryl]oxy}phosphoryl]oxy}-2-methyloxan-3-yl]amino}ethyl]sulfanyl}ethyl)amino]-3-oxopropyl}amino)-3-hydroxy-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H65 N10 O30 P5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-10 _chem_comp.pdbx_modified_date 2022-03-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1340.916 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NH9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7TXS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NH9 O5P O1 O 0 1 N N N -5.509 -10.487 33.156 0.329 3.811 2.236 O5P NH9 1 NH9 C5P C1 C 0 1 N N N -6.693 -10.509 33.416 0.366 3.840 1.024 C5P NH9 2 NH9 C6P C2 C 0 1 N N N -7.170 -10.733 34.821 1.614 4.305 0.319 C6P NH9 3 NH9 C7P C3 C 0 1 N N N -6.253 -11.669 35.613 2.675 4.679 1.356 C7P NH9 4 NH9 N8P N1 N 0 1 N N N -6.842 -11.870 36.939 3.889 5.131 0.671 N8P NH9 5 NH9 C9P C4 C 0 1 N N N -6.430 -11.306 38.065 4.964 5.515 1.387 C9P NH9 6 NH9 O9P O2 O 0 1 N N N -5.431 -10.559 38.140 4.900 5.565 2.597 O9P NH9 7 NH9 CAP C5 C 0 1 N N R -7.166 -11.675 39.328 6.246 5.883 0.684 CAP NH9 8 NH9 OAP O3 O 0 1 N N N -7.382 -10.445 40.047 6.011 5.964 -0.723 OAP NH9 9 NH9 CBP C6 C 0 1 N N N -6.428 -12.785 40.150 7.305 4.815 0.965 CBP NH9 10 NH9 CDP C7 C 0 1 N N N -4.956 -12.492 40.424 7.671 4.837 2.450 CDP NH9 11 NH9 CEP C8 C 0 1 N N N -6.591 -14.116 39.419 6.750 3.437 0.597 CEP NH9 12 NH9 CCP C9 C 0 1 N N N -7.075 -12.987 41.526 8.552 5.102 0.127 CCP NH9 13 NH9 O6A O4 O 0 1 N N N -8.451 -13.166 41.335 9.542 4.105 0.388 O6A NH9 14 NH9 P2A P1 P 0 1 N N N -9.316 -13.817 42.570 10.986 4.095 -0.323 P2A NH9 15 NH9 O4A O5 O 0 1 N N N -8.637 -15.051 43.058 11.819 5.393 0.137 O4A NH9 16 NH9 O5A O6 O 0 1 N N N -10.734 -13.867 42.072 10.813 4.114 -1.792 O5A NH9 17 NH9 O3A O7 O 0 1 N N N -8.977 -12.820 43.796 11.786 2.765 0.106 O3A NH9 18 NH9 P1A P2 P 0 1 N N N -9.951 -11.700 44.368 13.094 2.015 -0.460 P1A NH9 19 NH9 O1A O8 O 0 1 N N N -10.415 -10.745 43.292 13.077 2.044 -1.940 O1A NH9 20 NH9 O2A O9 O 0 1 N N N -11.122 -12.350 45.102 14.415 2.761 0.076 O2A NH9 21 NH9 O5B O10 O 0 1 N N N -8.991 -10.911 45.379 13.097 0.486 0.046 O5B NH9 22 NH9 C5B C10 C 0 1 N N N -8.288 -11.551 46.477 14.073 -0.470 -0.373 C5B NH9 23 NH9 C4B C11 C 0 1 N N R -7.328 -10.590 47.144 13.785 -1.817 0.293 C4B NH9 24 NH9 C3B C12 C 0 1 N N S -7.985 -9.261 47.477 14.898 -2.833 -0.045 C3B NH9 25 NH9 O3B O11 O 0 1 N N N -7.385 -8.690 48.614 15.843 -2.916 1.024 O3B NH9 26 NH9 P3B P3 P 0 1 N N N -8.107 -8.698 50.090 17.405 -2.572 0.842 P3B NH9 27 NH9 O9A O12 O 0 1 N N N -9.463 -8.140 49.880 17.966 -3.392 -0.255 O9A NH9 28 NH9 O8A O13 O 0 1 N N N -8.154 -10.121 50.546 17.573 -1.011 0.486 O8A NH9 29 NH9 O7A O14 O 0 1 N N N -7.135 -7.836 50.815 18.189 -2.898 2.210 O7A NH9 30 NH9 C2B C13 C 0 1 N N R -7.614 -8.431 46.255 14.146 -4.173 -0.209 C2B NH9 31 NH9 O2B O15 O 0 1 N N N -7.612 -7.035 46.528 14.603 -5.124 0.754 O2B NH9 32 NH9 O4B O16 O 0 1 N N N -6.209 -10.309 46.244 12.578 -2.398 -0.247 O4B NH9 33 NH9 C1B C14 C 0 1 N N R -6.239 -8.929 45.869 12.668 -3.808 0.051 C1B NH9 34 NH9 N9A N2 N 0 1 Y N N -6.007 -8.912 44.400 11.790 -4.574 -0.837 N9A NH9 35 NH9 C4A C15 C 0 1 Y N N -5.268 -8.031 43.739 11.266 -5.817 -0.587 C4A NH9 36 NH9 N3A N3 N 0 1 Y N N -4.587 -6.942 44.143 11.344 -6.683 0.419 N3A NH9 37 NH9 C2A C16 C 0 1 Y N N -3.949 -6.252 43.174 10.706 -7.833 0.364 C2A NH9 38 NH9 C8A C17 C 0 1 Y N N -6.493 -9.819 43.547 11.339 -4.180 -2.062 C8A NH9 39 NH9 N7A N4 N 0 1 Y N N -6.097 -9.558 42.288 10.579 -5.104 -2.575 N7A NH9 40 NH9 C5A C18 C 0 1 Y N N -5.351 -8.423 42.396 10.493 -6.146 -1.713 C5A NH9 41 NH9 C6A C19 C 0 1 Y N N -4.639 -7.661 41.451 9.835 -7.387 -1.726 C6A NH9 42 NH9 N6A N5 N 0 1 N N N -4.656 -8.059 40.153 9.059 -7.766 -2.808 N6A NH9 43 NH9 N1A N6 N 0 1 Y N N -3.969 -6.596 41.885 9.967 -8.186 -0.673 N1A NH9 44 NH9 N4P N7 N 0 1 N N N -7.657 -10.382 32.482 -0.707 3.451 0.307 N4P NH9 45 NH9 C3P C20 C 0 1 N N N -7.312 -10.164 31.070 -1.919 2.993 0.992 C3P NH9 46 NH9 C2P C21 C 0 1 N N N -8.032 -11.246 30.276 -2.978 2.613 -0.044 C2P NH9 47 NH9 S1P S1 S 0 1 N N N -7.892 -11.003 28.518 -4.478 2.046 0.804 S1P NH9 48 NH9 C01 C22 C 0 1 N N S -9.646 -10.938 27.849 -5.597 1.649 -0.567 C01 NH9 49 NH9 C02 C23 C 0 1 N N N -9.670 -9.838 26.780 -5.241 0.273 -1.133 C02 NH9 50 NH9 N4A N8 N 0 1 N N N -10.149 -12.210 27.249 -6.983 1.634 -0.080 N4A NH9 51 NH9 C4G C24 C 0 1 N N S -10.169 -13.300 28.232 -7.696 2.852 -0.485 C4G NH9 52 NH9 C3G C25 C 0 1 N N S -11.581 -13.509 28.775 -8.345 2.634 -1.855 C3G NH9 53 NH9 O3G O17 O 0 1 N N N -12.018 -12.275 29.399 -7.330 2.407 -2.835 O3G NH9 54 NH9 C2G C26 C 0 1 N N R -11.548 -14.693 29.736 -9.150 3.882 -2.231 C2G NH9 55 NH9 O2G O18 O 0 1 N N N -12.853 -14.938 30.295 -9.819 3.662 -3.475 O2G NH9 56 NH9 C5G C27 C 0 1 N N R -9.642 -14.604 27.614 -8.785 3.173 0.542 C5G NH9 57 NH9 C6G C28 C 0 1 N N N -8.172 -14.561 27.200 -8.139 3.452 1.901 C6G NH9 58 NH9 O5G O19 O 0 1 N N N -9.667 -15.652 28.595 -9.515 4.325 0.116 O5G NH9 59 NH9 C1G C29 C 0 1 N N R -10.957 -15.941 29.119 -10.183 4.163 -1.137 C1G NH9 60 NH9 O1G O20 O 0 1 N N N -11.793 -16.329 28.043 -11.097 3.067 -1.051 O1G NH9 61 NH9 P2 P4 P 0 1 N N N -11.930 -17.879 27.666 -12.630 3.238 -0.590 P2 NH9 62 NH9 O4P O21 O 0 1 N N N -12.498 -17.917 26.287 -12.676 3.904 0.730 O4P NH9 63 NH9 O3P O22 O 0 1 N N N -10.697 -18.604 27.919 -13.419 4.132 -1.671 O3P NH9 64 NH9 OPP O23 O 0 1 N N N -13.003 -18.429 28.716 -13.323 1.788 -0.484 OPP NH9 65 NH9 P P5 P 0 1 N N N -14.558 -18.726 28.544 -14.679 1.244 0.190 P NH9 66 NH9 O1P O24 O 0 1 N N N -15.289 -17.537 27.979 -15.794 2.161 -0.135 O1P NH9 67 NH9 O2P O25 O 0 1 N N N -15.027 -19.244 29.856 -14.493 1.171 1.788 O2P NH9 68 NH9 O5 O26 O 0 1 N N N -14.653 -19.829 27.426 -15.009 -0.226 -0.379 O5 NH9 69 NH9 C5 C30 C 0 1 N N N -13.883 -21.038 27.521 -16.205 -0.937 -0.051 C5 NH9 70 NH9 C4 C31 C 0 1 N N R -14.679 -22.042 26.703 -16.201 -2.294 -0.757 C4 NH9 71 NH9 C3 C32 C 0 1 N N S -16.040 -22.407 27.342 -17.539 -3.028 -0.519 C3 NH9 72 NH9 O3 O27 O 0 1 N N N -17.092 -22.259 26.384 -18.411 -2.856 -1.638 O3 NH9 73 NH9 C2 C33 C 0 1 N N N -15.799 -23.845 27.745 -17.133 -4.512 -0.373 C2 NH9 74 NH9 C1 C34 C 0 1 N N R -14.764 -24.362 26.787 -15.597 -4.498 -0.540 C1 NH9 75 NH9 O4 O28 O 0 1 N N N -13.911 -23.231 26.505 -15.198 -3.158 -0.179 O4 NH9 76 NH9 N11 N9 N 0 1 N N N -13.899 -25.421 27.340 -14.978 -5.474 0.360 N11 NH9 77 NH9 C21 C35 C 0 1 N N N -13.938 -26.690 26.750 -15.071 -5.306 1.692 C21 NH9 78 NH9 O21 O29 O 0 1 N N N -14.690 -26.940 25.795 -15.670 -4.345 2.134 O21 NH9 79 NH9 N31 N10 N 0 1 N N N -13.221 -27.671 27.327 -14.513 -6.188 2.542 N31 NH9 80 NH9 C41 C36 C 0 1 N N N -12.425 -27.414 28.377 -13.846 -7.260 2.068 C41 NH9 81 NH9 O41 O30 O 0 1 N N N -11.792 -28.448 28.780 -13.340 -8.058 2.836 O41 NH9 82 NH9 C51 C37 C 0 1 N N N -12.352 -26.159 28.952 -13.739 -7.448 0.669 C51 NH9 83 NH9 C52 C38 C 0 1 N N N -11.479 -25.866 30.137 -12.999 -8.637 0.113 C52 NH9 84 NH9 C61 C39 C 0 1 N N N -13.106 -25.149 28.383 -14.314 -6.551 -0.161 C61 NH9 85 NH9 H1 H1 H 0 1 N N N -7.213 -9.763 35.337 1.993 3.504 -0.315 H1 NH9 86 NH9 H2 H2 H 0 1 N N N -8.177 -11.174 34.785 1.382 5.175 -0.294 H2 NH9 87 NH9 H3 H3 H 0 1 N N N -6.167 -12.635 35.093 2.297 5.481 1.990 H3 NH9 88 NH9 H4 H4 H 0 1 N N N -5.255 -11.217 35.713 2.907 3.809 1.969 H4 NH9 89 NH9 H5 H5 H 0 1 N N N -7.625 -12.488 37.000 3.918 5.155 -0.299 H5 NH9 90 NH9 H6 H6 H 0 1 N N N -8.144 -12.086 39.037 6.597 6.847 1.050 H6 NH9 91 NH9 H7 H7 H 0 1 N N N -6.771 -9.786 39.739 5.696 5.139 -1.117 H7 NH9 92 NH9 H8 H8 H 0 1 N N N -4.519 -13.319 41.003 6.801 4.558 3.043 H8 NH9 93 NH9 H9 H9 H 0 1 N N N -4.419 -12.389 39.470 8.480 4.129 2.635 H9 NH9 94 NH9 H10 H10 H 0 1 N N N -4.869 -11.557 40.997 7.995 5.840 2.729 H10 NH9 95 NH9 H11 H11 H 0 1 N N N -6.078 -14.910 39.982 6.489 3.421 -0.461 H11 NH9 96 NH9 H12 H12 H 0 1 N N N -7.660 -14.359 39.334 7.504 2.676 0.796 H12 NH9 97 NH9 H13 H13 H 0 1 N N N -6.152 -14.038 38.413 5.861 3.232 1.194 H13 NH9 98 NH9 H14 H14 H 0 1 N N N -6.647 -13.876 42.013 8.291 5.086 -0.931 H14 NH9 99 NH9 H15 H15 H 0 1 N N N -6.897 -12.103 42.156 8.948 6.083 0.389 H15 NH9 100 NH9 H16 H16 H 0 1 N N N -9.232 -15.788 42.991 11.971 5.446 1.090 H16 NH9 101 NH9 H17 H17 H 0 1 N N N -11.940 -12.029 44.741 14.492 2.780 1.040 H17 NH9 102 NH9 H18 H18 H 0 1 N N N -9.022 -11.899 47.219 14.029 -0.584 -1.456 H18 NH9 103 NH9 H19 H19 H 0 1 N N N -7.723 -12.411 46.089 15.066 -0.126 -0.083 H19 NH9 104 NH9 H20 H20 H 0 1 N N N -6.952 -11.045 48.072 13.698 -1.695 1.373 H20 NH9 105 NH9 H21 H21 H 0 1 N N N -9.076 -9.367 47.571 15.397 -2.557 -0.974 H21 NH9 106 NH9 H22 H22 H 0 1 N N N -9.059 -10.402 50.616 17.226 -0.414 1.163 H22 NH9 107 NH9 H23 H23 H 0 1 N N N -7.551 -7.014 51.047 19.138 -2.715 2.173 H23 NH9 108 NH9 H24 H24 H 0 1 N N N -8.319 -8.659 45.442 14.274 -4.562 -1.219 H24 NH9 109 NH9 H25 H25 H 0 1 N N N -8.489 -6.757 46.766 14.165 -5.984 0.697 H25 NH9 110 NH9 H26 H26 H 0 1 N N N -5.463 -8.351 46.392 12.409 -3.993 1.093 H26 NH9 111 NH9 H27 H27 H 0 1 N N N -3.391 -5.372 43.458 10.790 -8.514 1.198 H27 NH9 112 NH9 H28 H28 H 0 1 N N N -7.120 -10.651 43.831 11.576 -3.239 -2.536 H28 NH9 113 NH9 H29 H29 H 0 1 N N N -4.099 -7.435 39.605 8.604 -8.623 -2.803 H29 NH9 114 NH9 H30 H30 H 0 1 N N N -4.285 -8.985 40.084 8.969 -7.174 -3.572 H30 NH9 115 NH9 H31 H31 H 0 1 N N N -8.618 -10.437 32.753 -0.678 3.474 -0.662 H31 NH9 116 NH9 H32 H32 H 0 1 N N N -6.225 -10.248 30.927 -1.683 2.124 1.606 H32 NH9 117 NH9 H33 H33 H 0 1 N N N -7.648 -9.168 30.746 -2.302 3.792 1.627 H33 NH9 118 NH9 H34 H34 H 0 1 N N N -9.097 -11.236 30.550 -3.214 3.483 -0.658 H34 NH9 119 NH9 H35 H35 H 0 1 N N N -7.596 -12.223 30.534 -2.595 1.814 -0.679 H35 NH9 120 NH9 H36 H36 H 0 1 N N N -10.281 -10.642 28.697 -5.495 2.401 -1.349 H36 NH9 121 NH9 H37 H37 H 0 1 N N N -9.301 -8.897 27.213 -5.343 -0.480 -0.351 H37 NH9 122 NH9 H38 H38 H 0 1 N N N -9.026 -10.131 25.938 -5.913 0.034 -1.958 H38 NH9 123 NH9 H39 H39 H 0 1 N N N -10.701 -9.697 26.422 -4.212 0.284 -1.495 H39 NH9 124 NH9 H40 H40 H 0 1 N N N -11.078 -12.063 26.908 -7.469 0.808 -0.397 H40 NH9 125 NH9 H42 H42 H 0 1 N N N -9.514 -13.033 29.074 -6.993 3.684 -0.544 H42 NH9 126 NH9 H43 H43 H 0 1 N N N -12.248 -13.756 27.935 -9.009 1.770 -1.811 H43 NH9 127 NH9 H44 H44 H 0 1 N N N -12.896 -12.387 29.743 -7.671 2.260 -3.728 H44 NH9 128 NH9 H45 H45 H 0 1 N N N -10.883 -14.405 30.563 -8.477 4.734 -2.326 H45 NH9 129 NH9 H46 H46 H 0 1 N N N -12.810 -15.678 30.889 -10.349 4.413 -3.774 H46 NH9 130 NH9 H47 H47 H 0 1 N N N -10.260 -14.870 26.744 -9.464 2.324 0.629 H47 NH9 131 NH9 H48 H48 H 0 1 N N N -7.883 -15.531 26.770 -7.524 4.349 1.833 H48 NH9 132 NH9 H49 H49 H 0 1 N N N -8.025 -13.770 26.450 -8.917 3.601 2.649 H49 NH9 133 NH9 H50 H50 H 0 1 N N N -7.549 -14.350 28.082 -7.516 2.604 2.187 H50 NH9 134 NH9 H51 H51 H 0 1 N N N -10.901 -16.735 29.878 -10.730 5.074 -1.378 H51 NH9 135 NH9 H52 H52 H 0 1 N N N -10.408 -19.027 27.119 -13.429 3.755 -2.562 H52 NH9 136 NH9 H53 H53 H 0 1 N N N -15.758 -18.720 30.161 -13.777 0.587 2.074 H53 NH9 137 NH9 H54 H54 H 0 1 N N N -13.797 -21.366 28.567 -16.254 -1.088 1.027 H54 NH9 138 NH9 H55 H55 H 0 1 N N N -12.878 -20.896 27.097 -17.071 -0.360 -0.377 H55 NH9 139 NH9 H56 H56 H 0 1 N N N -14.887 -21.586 25.724 -16.023 -2.165 -1.825 H56 NH9 140 NH9 H57 H57 H 0 1 N N N -16.214 -21.785 28.232 -18.014 -2.670 0.395 H57 NH9 141 NH9 H58 H58 H 0 1 N N N -17.922 -22.486 26.787 -19.266 -3.296 -1.542 H58 NH9 142 NH9 H59 H59 H 0 1 N N N -16.727 -24.429 27.660 -17.406 -4.887 0.613 H59 NH9 143 NH9 H60 H60 H 0 1 N N N -15.426 -23.897 28.779 -17.598 -5.114 -1.153 H60 NH9 144 NH9 H61 H61 H 0 1 N N N -15.253 -24.715 25.867 -15.326 -4.711 -1.574 H61 NH9 145 NH9 H62 H62 H 0 1 N N N -13.282 -28.603 26.970 -14.590 -6.052 3.499 H62 NH9 146 NH9 H63 H63 H 0 1 N N N -11.584 -24.808 30.418 -12.614 -9.242 0.934 H63 NH9 147 NH9 H64 H64 H 0 1 N N N -11.783 -26.501 30.982 -13.678 -9.238 -0.493 H64 NH9 148 NH9 H65 H65 H 0 1 N N N -10.430 -26.075 29.880 -12.170 -8.293 -0.505 H65 NH9 149 NH9 H66 H66 H 0 1 N N N -13.055 -24.145 28.779 -14.247 -6.681 -1.231 H66 NH9 150 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NH9 O21 C21 DOUB N N 1 NH9 O4P P2 DOUB N N 2 NH9 O3 C3 SING N N 3 NH9 O4 C4 SING N N 4 NH9 O4 C1 SING N N 5 NH9 C4 C3 SING N N 6 NH9 C4 C5 SING N N 7 NH9 C21 N31 SING N N 8 NH9 C21 N11 SING N N 9 NH9 C02 C01 SING N N 10 NH9 C1 N11 SING N N 11 NH9 C1 C2 SING N N 12 NH9 C6G C5G SING N N 13 NH9 N4A C01 SING N N 14 NH9 N4A C4G SING N N 15 NH9 N31 C41 SING N N 16 NH9 N11 C61 SING N N 17 NH9 C3 C2 SING N N 18 NH9 O5 C5 SING N N 19 NH9 O5 P SING N N 20 NH9 C5G C4G SING N N 21 NH9 C5G O5G SING N N 22 NH9 P2 O3P SING N N 23 NH9 P2 O1G SING N N 24 NH9 P2 OPP SING N N 25 NH9 C01 S1P SING N N 26 NH9 O1P P DOUB N N 27 NH9 O1G C1G SING N N 28 NH9 C4G C3G SING N N 29 NH9 C41 O41 DOUB N N 30 NH9 C41 C51 SING N N 31 NH9 C61 C51 DOUB N N 32 NH9 S1P C2P SING N N 33 NH9 P OPP SING N N 34 NH9 P O2P SING N N 35 NH9 O5G C1G SING N N 36 NH9 C3G O3G SING N N 37 NH9 C3G C2G SING N N 38 NH9 C51 C52 SING N N 39 NH9 C1G C2G SING N N 40 NH9 C2G O2G SING N N 41 NH9 C2P C3P SING N N 42 NH9 C3P N4P SING N N 43 NH9 N4P C5P SING N N 44 NH9 O5P C5P DOUB N N 45 NH9 C5P C6P SING N N 46 NH9 C6P C7P SING N N 47 NH9 C7P N8P SING N N 48 NH9 N8P C9P SING N N 49 NH9 C9P O9P DOUB N N 50 NH9 C9P CAP SING N N 51 NH9 CAP OAP SING N N 52 NH9 CAP CBP SING N N 53 NH9 CEP CBP SING N N 54 NH9 CBP CDP SING N N 55 NH9 CBP CCP SING N N 56 NH9 N6A C6A SING N N 57 NH9 O6A CCP SING N N 58 NH9 O6A P2A SING N N 59 NH9 C6A N1A DOUB Y N 60 NH9 C6A C5A SING Y N 61 NH9 N1A C2A SING Y N 62 NH9 O5A P2A DOUB N N 63 NH9 N7A C5A SING Y N 64 NH9 N7A C8A DOUB Y N 65 NH9 C5A C4A DOUB Y N 66 NH9 P2A O4A SING N N 67 NH9 P2A O3A SING N N 68 NH9 C2A N3A DOUB Y N 69 NH9 O1A P1A DOUB N N 70 NH9 C8A N9A SING Y N 71 NH9 C4A N3A SING Y N 72 NH9 C4A N9A SING Y N 73 NH9 O3A P1A SING N N 74 NH9 P1A O2A SING N N 75 NH9 P1A O5B SING N N 76 NH9 N9A C1B SING N N 77 NH9 O5B C5B SING N N 78 NH9 C1B O4B SING N N 79 NH9 C1B C2B SING N N 80 NH9 O4B C4B SING N N 81 NH9 C2B O2B SING N N 82 NH9 C2B C3B SING N N 83 NH9 C5B C4B SING N N 84 NH9 C4B C3B SING N N 85 NH9 C3B O3B SING N N 86 NH9 O3B P3B SING N N 87 NH9 O9A P3B DOUB N N 88 NH9 P3B O8A SING N N 89 NH9 P3B O7A SING N N 90 NH9 C6P H1 SING N N 91 NH9 C6P H2 SING N N 92 NH9 C7P H3 SING N N 93 NH9 C7P H4 SING N N 94 NH9 N8P H5 SING N N 95 NH9 CAP H6 SING N N 96 NH9 OAP H7 SING N N 97 NH9 CDP H8 SING N N 98 NH9 CDP H9 SING N N 99 NH9 CDP H10 SING N N 100 NH9 CEP H11 SING N N 101 NH9 CEP H12 SING N N 102 NH9 CEP H13 SING N N 103 NH9 CCP H14 SING N N 104 NH9 CCP H15 SING N N 105 NH9 O4A H16 SING N N 106 NH9 O2A H17 SING N N 107 NH9 C5B H18 SING N N 108 NH9 C5B H19 SING N N 109 NH9 C4B H20 SING N N 110 NH9 C3B H21 SING N N 111 NH9 O8A H22 SING N N 112 NH9 O7A H23 SING N N 113 NH9 C2B H24 SING N N 114 NH9 O2B H25 SING N N 115 NH9 C1B H26 SING N N 116 NH9 C2A H27 SING N N 117 NH9 C8A H28 SING N N 118 NH9 N6A H29 SING N N 119 NH9 N6A H30 SING N N 120 NH9 N4P H31 SING N N 121 NH9 C3P H32 SING N N 122 NH9 C3P H33 SING N N 123 NH9 C2P H34 SING N N 124 NH9 C2P H35 SING N N 125 NH9 C01 H36 SING N N 126 NH9 C02 H37 SING N N 127 NH9 C02 H38 SING N N 128 NH9 C02 H39 SING N N 129 NH9 N4A H40 SING N N 130 NH9 C4G H42 SING N N 131 NH9 C3G H43 SING N N 132 NH9 O3G H44 SING N N 133 NH9 C2G H45 SING N N 134 NH9 O2G H46 SING N N 135 NH9 C5G H47 SING N N 136 NH9 C6G H48 SING N N 137 NH9 C6G H49 SING N N 138 NH9 C6G H50 SING N N 139 NH9 C1G H51 SING N N 140 NH9 O3P H52 SING N N 141 NH9 O2P H53 SING N N 142 NH9 C5 H54 SING N N 143 NH9 C5 H55 SING N N 144 NH9 C4 H56 SING N N 145 NH9 C3 H57 SING N N 146 NH9 O3 H58 SING N N 147 NH9 C2 H59 SING N N 148 NH9 C2 H60 SING N N 149 NH9 C1 H61 SING N N 150 NH9 N31 H62 SING N N 151 NH9 C52 H63 SING N N 152 NH9 C52 H64 SING N N 153 NH9 C52 H65 SING N N 154 NH9 C61 H66 SING N N 155 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NH9 SMILES ACDLabs 12.01 "O=P(O)(O)OC1C(O)C(OC1COP(=O)(O)OP(=O)(O)OCC(C)(C)C(O)C(=O)NCCC(=O)NCCSC(C)NC1C(C)OC(OP(=O)(O)OP(=O)(O)OCC2OC(CC2O)N2C=C(C)C(=O)NC2=O)C(O)C1O)n1cnc2c(N)ncnc21" NH9 InChI InChI 1.03 "InChI=1S/C39H65N10O30P5S/c1-17-11-48(38(58)47-34(17)56)24-10-20(50)21(74-24)12-70-82(64,65)79-84(68,69)77-37-28(53)27(52)25(18(2)73-37)46-19(3)85-9-8-41-23(51)6-7-42-35(57)31(55)39(4,5)14-72-83(66,67)78-81(62,63)71-13-22-30(76-80(59,60)61)29(54)36(75-22)49-16-45-26-32(40)43-15-44-33(26)49/h11,15-16,18-22,24-25,27-31,36-37,46,50,52-55H,6-10,12-14H2,1-5H3,(H,41,51)(H,42,57)(H,62,63)(H,64,65)(H,66,67)(H,68,69)(H2,40,43,44)(H,47,56,58)(H2,59,60,61)/t18-,19+,20+,21-,22-,24-,25-,27+,28-,29-,30-,31+,36-,37-/m1/s1" NH9 InChIKey InChI 1.03 CAIUZPLIIIAOAA-MGECECIFSA-N NH9 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](N[C@@H]1[C@@H](C)O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@H]1O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O[P](O)(O)=O)n5cnc6c(N)ncnc56" NH9 SMILES CACTVS 3.385 "C[CH](N[CH]1[CH](C)O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH]1O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O[P](O)(O)=O)n5cnc6c(N)ncnc56" NH9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)O)N[C@H](C)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)OP(=O)(O)O)O" NH9 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)O)O)NC(C)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)OP(=O)(O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NH9 "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl (3R)-4-({3-[(2-{[(1S)-1-{[(2R,3S,4S,5R,6R)-4,5-dihydroxy-6-{[(R)-hydroxy{[(R)-hydroxy{[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)oxolan-2-yl]methoxy}phosphoryl]oxy}phosphoryl]oxy}-2-methyloxan-3-yl]amino}ethyl]sulfanyl}ethyl)amino]-3-oxopropyl}amino)-3-hydroxy-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate (non-preferred name)" NH9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{R})-2,2-dimethyl-4-[[3-[2-[(1~{S})-1-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-methyl-6-[[[(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-4,5-bis(oxidanyl)oxan-3-yl]amino]ethyl]sulfanylethylamino]-3-oxidanylidene-propyl]amino]-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NH9 "Create component" 2022-02-10 RCSB NH9 "Initial release" 2022-03-09 RCSB ##