data_NIA # _chem_comp.id NIA _chem_comp.name "((2R,3S,4R,5R)-5-(5-AMINO-4-NITRO-1H-IMIDAZOL-1-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL)METHYL DIHYDROGEN PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H13 N4 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-NITRO-5-AMINOIMIDAZOLE RIBONUCLEOTIDE; NITRO AIR" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-09-07 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.184 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NIA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2ATE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NIA O8 O8 O 0 1 N N N 16.277 -12.941 -9.181 4.300 -1.878 1.195 O8 NIA 1 NIA P P P 0 1 N N N 15.601 -11.667 -9.589 4.652 -0.993 -0.103 P NIA 2 NIA O6 O6 O 0 1 N N N 14.590 -11.160 -8.616 5.543 0.123 0.286 O6 NIA 3 NIA O7 O7 O 0 1 N N N 16.536 -10.585 -10.075 5.394 -1.915 -1.196 O7 NIA 4 NIA "O5'" "O5'" O 0 1 N N N 14.781 -12.140 -10.905 3.294 -0.401 -0.734 "O5'" NIA 5 NIA "C5'" "C5'" C 0 1 N N N 14.044 -11.149 -11.593 2.747 0.496 0.234 "C5'" NIA 6 NIA "C4'" "C4'" C 0 1 N N R 13.348 -11.780 -12.767 1.447 1.097 -0.305 "C4'" NIA 7 NIA "C3'" "C3'" C 0 1 N N S 12.538 -13.077 -12.506 0.859 2.108 0.704 "C3'" NIA 8 NIA "O3'" "O3'" O 0 1 N N N 11.150 -12.861 -12.819 1.209 3.444 0.336 "O3'" NIA 9 NIA "C2'" "C2'" C 0 1 N N R 13.214 -14.092 -13.440 -0.670 1.899 0.599 "C2'" NIA 10 NIA "O2'" "O2'" O 0 1 N N N 12.306 -15.067 -14.060 -1.311 3.100 0.166 "O2'" NIA 11 NIA "O4'" "O4'" O 0 1 N N N 14.405 -12.071 -13.715 0.436 0.074 -0.435 "O4'" NIA 12 NIA "C1'" "C1'" C 0 1 N N R 13.973 -13.175 -14.462 -0.822 0.784 -0.459 "C1'" NIA 13 NIA N1 N1 N 0 1 Y N N 14.874 -14.073 -15.154 -1.921 -0.115 -0.098 N1 NIA 14 NIA C5 C5 C 0 1 Y N N 14.777 -14.288 -16.484 -3.245 0.053 -0.408 C5 NIA 15 NIA N6 N6 N 0 1 N N N 13.915 -13.641 -17.316 -3.805 1.111 -1.125 N6 NIA 16 NIA C4 C4 C 0 1 Y N N 15.589 -15.360 -16.772 -3.907 -1.003 0.122 C4 NIA 17 NIA N7 N7 N 1 1 N N N 15.774 -15.971 -17.958 -5.365 -1.246 0.039 N7 NIA 18 NIA O72 O72 O 0 1 N N N 14.989 -15.749 -18.913 -6.083 -0.451 -0.540 O72 NIA 19 NIA O71 O71 O -1 1 N N N 16.485 -17.004 -17.967 -5.847 -2.241 0.550 O71 NIA 20 NIA N3 N3 N 0 1 Y N N 16.244 -15.741 -15.652 -3.009 -1.796 0.729 N3 NIA 21 NIA C2 C2 C 0 1 Y N N 15.760 -14.958 -14.663 -1.820 -1.275 0.607 C2 NIA 22 NIA HO8 HO8 H 0 1 N N N 16.420 -13.484 -9.948 3.720 -2.592 0.898 HO8 NIA 23 NIA HO7 HO7 H 0 1 N N N 16.732 -9.991 -9.360 6.200 -2.249 -0.779 HO7 NIA 24 NIA "H5'1" "1H5'" H 0 0 N N N 14.724 -10.360 -11.946 3.461 1.295 0.434 "H5'1" NIA 25 NIA "H5'2" "2H5'" H 0 0 N N N 13.298 -10.707 -10.916 2.540 -0.046 1.157 "H5'2" NIA 26 NIA "H4'" "H4'" H 0 1 N N N 12.578 -11.071 -13.106 1.623 1.580 -1.267 "H4'" NIA 27 NIA "H3'" "H3'" H 0 1 N N N 12.540 -13.419 -11.461 1.208 1.887 1.713 "H3'" NIA 28 NIA H1 H1 H 0 1 N N N 10.647 -12.813 -12.014 0.816 4.028 1.000 H1 NIA 29 NIA "H2'" "H2'" H 0 1 N N N 13.886 -14.772 -12.896 -1.077 1.573 1.557 "H2'" NIA 30 NIA H2 H2 H 0 1 N N N 12.110 -14.797 -14.949 -1.129 3.772 0.837 H2 NIA 31 NIA "H1'" "H1'" H 0 1 N N N 13.447 -12.684 -15.294 -0.995 1.217 -1.444 "H1'" NIA 32 NIA HN61 1HN6 H 0 0 N N N 14.311 -12.764 -17.589 -3.238 1.824 -1.459 HN61 NIA 33 NIA HN62 2HN6 H 0 0 N N N 13.049 -13.482 -16.842 -4.760 1.132 -1.294 HN62 NIA 34 NIA H3 H3 H 0 1 N N N 16.045 -15.032 -13.624 -0.906 -1.695 1.001 H3 NIA 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NIA O8 P SING N N 1 NIA O8 HO8 SING N N 2 NIA P O6 DOUB N N 3 NIA P O7 SING N N 4 NIA P "O5'" SING N N 5 NIA O7 HO7 SING N N 6 NIA "O5'" "C5'" SING N N 7 NIA "C5'" "C4'" SING N N 8 NIA "C5'" "H5'1" SING N N 9 NIA "C5'" "H5'2" SING N N 10 NIA "C4'" "C3'" SING N N 11 NIA "C4'" "O4'" SING N N 12 NIA "C4'" "H4'" SING N N 13 NIA "C3'" "O3'" SING N N 14 NIA "C3'" "C2'" SING N N 15 NIA "C3'" "H3'" SING N N 16 NIA "O3'" H1 SING N N 17 NIA "C2'" "O2'" SING N N 18 NIA "C2'" "C1'" SING N N 19 NIA "C2'" "H2'" SING N N 20 NIA "O2'" H2 SING N N 21 NIA "O4'" "C1'" SING N N 22 NIA "C1'" N1 SING N N 23 NIA "C1'" "H1'" SING N N 24 NIA N1 C5 SING Y N 25 NIA N1 C2 SING Y N 26 NIA C5 N6 SING N N 27 NIA C5 C4 DOUB Y N 28 NIA N6 HN61 SING N N 29 NIA N6 HN62 SING N N 30 NIA C4 N7 SING N N 31 NIA C4 N3 SING Y N 32 NIA N7 O72 DOUB N N 33 NIA N7 O71 SING N N 34 NIA N3 C2 DOUB Y N 35 NIA C2 H3 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NIA SMILES ACDLabs 10.04 "[O-][N+](=O)c1ncn(c1N)C2OC(C(O)C2O)COP(=O)(O)O" NIA SMILES_CANONICAL CACTVS 3.341 "Nc1n(cnc1[N+]([O-])=O)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" NIA SMILES CACTVS 3.341 "Nc1n(cnc1[N+]([O-])=O)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" NIA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c(n1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)[N+](=O)[O-]" NIA SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c(n1C2C(C(C(O2)COP(=O)(O)O)O)O)N)[N+](=O)[O-]" NIA InChI InChI 1.03 "InChI=1S/C8H13N4O9P/c9-6-7(12(15)16)10-2-11(6)8-5(14)4(13)3(21-8)1-20-22(17,18)19/h2-5,8,13-14H,1,9H2,(H2,17,18,19)/t3-,4-,5-,8-/m1/s1" NIA InChIKey InChI 1.03 YVRCVGZPIYHJLU-AFCXAGJDSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NIA "SYSTEMATIC NAME" ACDLabs 10.04 "4-nitro-1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-imidazol-5-amine" NIA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(5-amino-4-nitro-imidazol-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NIA "Create component" 2005-09-07 RCSB NIA "Modify descriptor" 2011-06-04 RCSB NIA "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 NIA "4-NITRO-5-AMINOIMIDAZOLE RIBONUCLEOTIDE" ? ? 2 NIA "NITRO AIR" ? ? ##