data_NIY # _chem_comp.id NIY _chem_comp.name META-NITRO-TYROSINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H10 N2 O5" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-10-24 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 226.186 _chem_comp.one_letter_code Y _chem_comp.three_letter_code NIY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NIY N N N 0 1 N N N Y Y N 39.080 60.758 -5.504 -0.649 0.058 2.601 N NIY 1 NIY CA CA C 0 1 N N S Y N N 38.591 61.203 -6.805 0.778 0.254 2.550 CA NIY 2 NIY C C C 0 1 N N N Y N Y 39.355 60.518 -7.931 1.133 1.494 1.741 C NIY 3 NIY O O O 0 1 N N N Y N Y 38.769 60.118 -8.938 0.492 1.857 0.760 O NIY 4 NIY CB CB C 0 1 N N N N N N 38.739 62.730 -6.920 1.484 -0.975 1.962 CB NIY 5 NIY CG CG C 0 1 Y N N N N N 38.246 63.311 -8.228 2.940 -1.060 2.353 CG NIY 6 NIY CD1 CD1 C 0 1 Y N N N N N 37.169 62.747 -8.907 3.895 -0.457 1.549 CD1 NIY 7 NIY CD2 CD2 C 0 1 Y N N N N N 38.856 64.438 -8.781 3.294 -1.738 3.508 CD2 NIY 8 NIY CE1 CE1 C 0 1 Y N N N N N 36.710 63.287 -10.102 5.240 -0.535 1.911 CE1 NIY 9 NIY CE2 CE2 C 0 1 Y N N N N N 38.402 64.988 -9.979 4.639 -1.816 3.870 CE2 NIY 10 NIY CZ CZ C 0 1 Y N N N N N 37.328 64.406 -10.634 5.612 -1.215 3.071 CZ NIY 11 NIY OH OH O 0 1 N N N N N N 36.870 64.940 -11.815 6.920 -1.305 3.445 OH NIY 12 NIY NN NN N 1 1 N N N N N N 35.591 62.677 -10.790 6.218 0.083 1.084 NN NIY 13 NIY O1 O1 O -1 1 N N N N N N 35.130 61.597 -10.389 5.844 0.685 0.050 O1 NIY 14 NIY O2 O2 O 0 1 N N N N N N 35.092 63.234 -11.778 7.425 0.010 1.415 O2 NIY 15 NIY OXT OXT O 0 1 N Y N Y N Y ? ? ? 2.212 2.177 2.192 OXT NIY 16 NIY H H H 0 1 N N N Y Y N 38.838 61.434 -4.808 -1.168 0.442 3.373 H NIY 17 NIY H2 HN2 H 0 1 N Y N Y Y N 40.074 60.656 -5.538 -1.071 -0.620 1.989 H2 NIY 18 NIY HA HA H 0 1 N N N Y N N 37.529 60.932 -6.893 1.097 0.444 3.581 HA NIY 19 NIY HB2 1HB H 0 1 N N N N N N 39.816 62.948 -6.863 0.988 -1.897 2.295 HB2 NIY 20 NIY HB3 2HB H 0 1 N N N N N N 38.156 63.187 -6.107 1.393 -0.976 0.868 HB3 NIY 21 NIY HD1 HD1 H 0 1 N N N N N N 36.682 61.874 -8.497 3.599 0.072 0.646 HD1 NIY 22 NIY HD2 HD2 H 0 1 N N N N N N 39.694 64.892 -8.272 2.544 -2.209 4.137 HD2 NIY 23 NIY HE2 HE2 H 0 1 N N N N N N 38.884 65.861 -10.394 4.922 -2.346 4.775 HE2 NIY 24 NIY HH HH H 0 1 N N N N N N 35.929 65.063 -11.764 7.238 -2.213 3.331 HH NIY 25 NIY HXT HXT H 0 1 N Y N Y N Y 0.476 -0.427 -0.702 2.437 2.979 1.675 HXT NIY 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NIY N CA SING N N 1 NIY N H SING N N 2 NIY N H2 SING N N 3 NIY CA C SING N N 4 NIY CA CB SING N N 5 NIY CA HA SING N N 6 NIY C O DOUB N N 7 NIY C OXT SING N N 8 NIY CB CG SING N N 9 NIY CB HB2 SING N N 10 NIY CB HB3 SING N N 11 NIY CG CD1 DOUB Y N 12 NIY CG CD2 SING Y N 13 NIY CD1 CE1 SING Y N 14 NIY CD1 HD1 SING N N 15 NIY CD2 CE2 DOUB Y N 16 NIY CD2 HD2 SING N N 17 NIY CE1 CZ DOUB Y N 18 NIY CE1 NN SING N N 19 NIY CE2 CZ SING Y N 20 NIY CE2 HE2 SING N N 21 NIY CZ OH SING N N 22 NIY OH HH SING N N 23 NIY NN O1 SING N N 24 NIY NN O2 DOUB N N 25 NIY OXT HXT SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NIY SMILES ACDLabs 10.04 "O=[N+]([O-])c1cc(ccc1O)CC(C(=O)O)N" NIY SMILES_CANONICAL CACTVS 3.341 "N[C@@H](Cc1ccc(O)c(c1)[N+]([O-])=O)C(O)=O" NIY SMILES CACTVS 3.341 "N[CH](Cc1ccc(O)c(c1)[N+]([O-])=O)C(O)=O" NIY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1C[C@@H](C(=O)O)N)[N+](=O)[O-])O" NIY SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1CC(C(=O)O)N)[N+](=O)[O-])O" NIY InChI InChI 1.03 "InChI=1S/C9H10N2O5/c10-6(9(13)14)3-5-1-2-8(12)7(4-5)11(15)16/h1-2,4,6,12H,3,10H2,(H,13,14)/t6-/m0/s1" NIY InChIKey InChI 1.03 FBTSQILOGYXGMD-LURJTMIESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NIY "SYSTEMATIC NAME" ACDLabs 10.04 3-nitro-L-tyrosine NIY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-(4-hydroxy-3-nitro-phenyl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NIY "Create component" 2001-10-24 RCSB NIY "Modify descriptor" 2011-06-04 RCSB NIY "Modify backbone" 2023-11-03 PDBE NIY "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id NIY _pdbx_chem_comp_pcm.modified_residue_id TYR _pdbx_chem_comp_pcm.type Nitration _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0434 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession PTM-0213 #