data_NJ3 # _chem_comp.id NJ3 _chem_comp.name "2-chloranyl-1-[3-[(2R,6S)-4-[(4-chlorophenyl)amino]-2,6-dimethyl-oxan-4-yl]carbonyl-3,9-diazaspiro[5.5]undecan-9-yl]ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H35 Cl2 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-17 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 496.470 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NJ3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8APS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NJ3 O2 O1 O 0 1 N N N -21.490 26.142 2.280 -6.343 -1.097 0.272 O2 NJ3 1 NJ3 C17 C1 C 0 1 N N N -21.248 25.263 3.097 -5.688 -0.076 0.259 C17 NJ3 2 NJ3 C18 C2 C 0 1 N N N -21.611 25.417 4.529 -6.378 1.262 0.315 C18 NJ3 3 NJ3 N3 N1 N 0 1 N N N -20.650 24.122 2.754 -4.343 -0.139 0.199 N3 NJ3 4 NJ3 C16 C3 C 0 1 N N N -19.979 23.199 3.689 -3.655 -1.437 0.149 C16 NJ3 5 NJ3 C15 C4 C 0 1 N N N -18.469 23.166 3.359 -2.718 -1.451 -1.062 C15 NJ3 6 NJ3 C19 C5 C 0 1 N N N -20.583 23.719 1.359 -3.536 1.089 0.176 C19 NJ3 7 NJ3 C20 C6 C 0 1 N N N -19.102 23.829 1.039 -2.600 1.041 -1.036 C20 NJ3 8 NJ3 C14 C7 C 0 1 N N N -18.226 22.882 1.878 -1.778 -0.245 -0.990 C14 NJ3 9 NJ3 C13 C8 C 0 1 N N N -18.522 21.433 1.510 -0.820 -0.279 -2.183 C13 NJ3 10 NJ3 C12 C9 C 0 1 N N N -17.430 20.442 1.892 0.095 0.948 -2.134 C12 NJ3 11 NJ3 C21 C10 C 0 1 N N N -16.769 23.217 1.527 -0.977 -0.292 0.312 C21 NJ3 12 NJ3 C22 C11 C 0 1 N N N -15.738 22.185 1.988 -0.063 0.935 0.390 C22 NJ3 13 NJ3 N2 N2 N 0 1 N N N -16.130 20.919 1.385 0.762 0.988 -0.825 N2 NJ3 14 NJ3 C11 C12 C 0 1 N N N -15.342 20.334 0.457 2.105 1.072 -0.741 C11 NJ3 15 NJ3 O1 O2 O 0 1 N N N -14.306 20.913 0.127 2.778 1.057 -1.749 O1 NJ3 16 NJ3 C4 C13 C 0 1 N N N -15.699 18.994 -0.222 2.769 1.185 0.607 C4 NJ3 17 NJ3 C3 C14 C 0 1 N N N -15.594 17.888 0.834 2.450 2.551 1.223 C3 NJ3 18 NJ3 C23 C15 C 0 1 N N N -14.709 18.695 -1.340 4.286 1.054 0.443 C23 NJ3 19 NJ3 C24 C16 C 0 1 N N S -13.309 18.271 -0.878 4.802 2.212 -0.415 C24 NJ3 20 NJ3 C25 C17 C 0 1 N N N -12.490 17.760 -2.065 6.324 2.121 -0.534 C25 NJ3 21 NJ3 O3 O3 O 0 1 N N N -13.416 17.216 0.075 4.445 3.453 0.198 O3 NJ3 22 NJ3 C2 C18 C 0 1 N N R -14.154 17.590 1.234 3.036 3.652 0.335 C2 NJ3 23 NJ3 C1 C19 C 0 1 N N N -14.066 16.482 2.286 2.774 5.017 0.974 C1 NJ3 24 NJ3 N1 N3 N 0 1 N N N -17.069 19.001 -0.766 2.276 0.124 1.488 N1 NJ3 25 NJ3 C5 C20 C 0 1 Y N N -17.602 20.005 -1.540 2.358 -1.212 1.086 C5 NJ3 26 NJ3 C10 C21 C 0 1 Y N N -16.910 21.171 -1.931 1.872 -2.218 1.911 C10 NJ3 27 NJ3 C9 C22 C 0 1 Y N N -17.555 22.152 -2.696 1.955 -3.538 1.511 C9 NJ3 28 NJ3 C8 C23 C 0 1 Y N N -18.869 21.986 -3.045 2.521 -3.858 0.289 C8 NJ3 29 NJ3 CL2 CL2 CL 0 0 N N N -19.663 23.262 -3.970 2.623 -5.517 -0.210 CL2 NJ3 30 NJ3 C7 C24 C 0 1 Y N N -19.591 20.864 -2.680 3.006 -2.857 -0.535 C7 NJ3 31 NJ3 C6 C25 C 0 1 Y N N -18.946 19.883 -1.912 2.920 -1.536 -0.142 C6 NJ3 32 NJ3 H1 H1 H 0 1 N N N -22.095 26.393 4.682 -6.046 1.805 1.200 H1 NJ3 33 NJ3 H2 H2 H 0 1 N N N -22.304 24.614 4.820 -6.131 1.837 -0.577 H2 NJ3 34 NJ3 CL1 CL1 CL 0 0 N Y N -20.702 25.358 5.146 -8.163 1.015 0.397 CL1 NJ3 35 NJ3 H4 H4 H 0 1 N N N -20.124 23.549 4.722 -3.076 -1.579 1.061 H4 NJ3 36 NJ3 H5 H5 H 0 1 N N N -20.403 22.190 3.581 -4.390 -2.236 0.054 H5 NJ3 37 NJ3 H6 H6 H 0 1 N N N -17.989 22.378 3.958 -2.131 -2.370 -1.057 H6 NJ3 38 NJ3 H7 H7 H 0 1 N N N -18.026 24.140 3.614 -3.306 -1.401 -1.979 H7 NJ3 39 NJ3 H8 H8 H 0 1 N N N -21.175 24.394 0.724 -4.193 1.956 0.096 H8 NJ3 40 NJ3 H9 H9 H 0 1 N N N -20.939 22.687 1.229 -2.950 1.157 1.092 H9 NJ3 41 NJ3 H10 H10 H 0 1 N N N -18.956 23.589 -0.025 -3.189 1.065 -1.952 H10 NJ3 42 NJ3 H11 H11 H 0 1 N N N -18.780 24.863 1.229 -1.929 1.900 -1.011 H11 NJ3 43 NJ3 H12 H12 H 0 1 N N N -19.450 21.133 2.019 -0.216 -1.185 -2.139 H12 NJ3 44 NJ3 H13 H13 H 0 1 N N N -18.667 21.379 0.421 -1.393 -0.268 -3.111 H13 NJ3 45 NJ3 H14 H14 H 0 1 N N N -17.657 19.460 1.452 0.844 0.878 -2.923 H14 NJ3 46 NJ3 H15 H15 H 0 1 N N N -17.385 20.351 2.987 -0.498 1.852 -2.272 H15 NJ3 47 NJ3 H16 H16 H 0 1 N N N -16.694 23.309 0.433 -1.661 -0.290 1.161 H16 NJ3 48 NJ3 H17 H17 H 0 1 N N N -16.519 24.181 1.994 -0.371 -1.198 0.334 H17 NJ3 49 NJ3 H18 H18 H 0 1 N N N -15.745 22.103 3.085 -0.669 1.838 0.460 H18 NJ3 50 NJ3 H19 H19 H 0 1 N N N -14.732 22.473 1.649 0.580 0.857 1.267 H19 NJ3 51 NJ3 H20 H20 H 0 1 N N N -16.150 18.203 1.730 1.370 2.676 1.292 H20 NJ3 52 NJ3 H21 H21 H 0 1 N N N -16.043 16.970 0.428 2.889 2.614 2.218 H21 NJ3 53 NJ3 H22 H22 H 0 1 N N N -14.605 19.602 -1.953 4.763 1.086 1.423 H22 NJ3 54 NJ3 H23 H23 H 0 1 N N N -15.125 17.883 -1.954 4.519 0.107 -0.045 H23 NJ3 55 NJ3 H24 H24 H 0 1 N N N -12.799 19.140 -0.436 4.355 2.156 -1.408 H24 NJ3 56 NJ3 H25 H25 H 0 1 N N N -11.490 17.460 -1.719 6.596 1.174 -1.000 H25 NJ3 57 NJ3 H26 H26 H 0 1 N N N -12.997 16.894 -2.515 6.691 2.946 -1.145 H26 NJ3 58 NJ3 H27 H27 H 0 1 N N N -12.394 18.559 -2.815 6.770 2.178 0.459 H27 NJ3 59 NJ3 H28 H28 H 0 1 N N N -13.722 18.505 1.665 2.567 3.614 -0.648 H28 NJ3 60 NJ3 H29 H29 H 0 1 N N N -14.638 16.777 3.178 3.244 5.055 1.957 H29 NJ3 61 NJ3 H30 H30 H 0 1 N N N -14.483 15.551 1.874 3.191 5.801 0.342 H30 NJ3 62 NJ3 H31 H31 H 0 1 N N N -13.013 16.321 2.562 1.699 5.169 1.079 H31 NJ3 63 NJ3 H32 H32 H 0 1 N N N -17.672 18.927 0.028 1.892 0.348 2.350 H32 NJ3 64 NJ3 H33 H33 H 0 1 N N N -15.879 21.308 -1.639 1.431 -1.969 2.865 H33 NJ3 65 NJ3 H34 H34 H 0 1 N N N -17.018 23.035 -3.009 1.578 -4.320 2.152 H34 NJ3 66 NJ3 H35 H35 H 0 1 N N N -20.622 20.746 -2.978 3.447 -3.110 -1.487 H35 NJ3 67 NJ3 H36 H36 H 0 1 N N N -19.501 19.011 -1.600 3.298 -0.755 -0.786 H36 NJ3 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NJ3 CL2 C8 SING N N 1 NJ3 C8 C9 DOUB Y N 2 NJ3 C8 C7 SING Y N 3 NJ3 C9 C10 SING Y N 4 NJ3 C7 C6 DOUB Y N 5 NJ3 C25 C24 SING N N 6 NJ3 C10 C5 DOUB Y N 7 NJ3 C6 C5 SING Y N 8 NJ3 C5 N1 SING N N 9 NJ3 C23 C24 SING N N 10 NJ3 C23 C4 SING N N 11 NJ3 C24 O3 SING N N 12 NJ3 N1 C4 SING N N 13 NJ3 C4 C11 SING N N 14 NJ3 C4 C3 SING N N 15 NJ3 O3 C2 SING N N 16 NJ3 O1 C11 DOUB N N 17 NJ3 C11 N2 SING N N 18 NJ3 C3 C2 SING N N 19 NJ3 C20 C19 SING N N 20 NJ3 C20 C14 SING N N 21 NJ3 C2 C1 SING N N 22 NJ3 C19 N3 SING N N 23 NJ3 N2 C12 SING N N 24 NJ3 N2 C22 SING N N 25 NJ3 C13 C14 SING N N 26 NJ3 C13 C12 SING N N 27 NJ3 C21 C14 SING N N 28 NJ3 C21 C22 SING N N 29 NJ3 C14 C15 SING N N 30 NJ3 O2 C17 DOUB N N 31 NJ3 N3 C17 SING N N 32 NJ3 N3 C16 SING N N 33 NJ3 C17 C18 SING N N 34 NJ3 C15 C16 SING N N 35 NJ3 C18 H1 SING N N 36 NJ3 C18 H2 SING N N 37 NJ3 C18 CL1 SING N N 38 NJ3 C16 H4 SING N N 39 NJ3 C16 H5 SING N N 40 NJ3 C15 H6 SING N N 41 NJ3 C15 H7 SING N N 42 NJ3 C19 H8 SING N N 43 NJ3 C19 H9 SING N N 44 NJ3 C20 H10 SING N N 45 NJ3 C20 H11 SING N N 46 NJ3 C13 H12 SING N N 47 NJ3 C13 H13 SING N N 48 NJ3 C12 H14 SING N N 49 NJ3 C12 H15 SING N N 50 NJ3 C21 H16 SING N N 51 NJ3 C21 H17 SING N N 52 NJ3 C22 H18 SING N N 53 NJ3 C22 H19 SING N N 54 NJ3 C3 H20 SING N N 55 NJ3 C3 H21 SING N N 56 NJ3 C23 H22 SING N N 57 NJ3 C23 H23 SING N N 58 NJ3 C24 H24 SING N N 59 NJ3 C25 H25 SING N N 60 NJ3 C25 H26 SING N N 61 NJ3 C25 H27 SING N N 62 NJ3 C2 H28 SING N N 63 NJ3 C1 H29 SING N N 64 NJ3 C1 H30 SING N N 65 NJ3 C1 H31 SING N N 66 NJ3 N1 H32 SING N N 67 NJ3 C10 H33 SING N N 68 NJ3 C9 H34 SING N N 69 NJ3 C7 H35 SING N N 70 NJ3 C6 H36 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NJ3 InChI InChI 1.06 "InChI=1S/C25H35Cl2N3O3/c1-18-15-25(16-19(2)33-18,28-21-5-3-20(27)4-6-21)23(32)30-13-9-24(10-14-30)7-11-29(12-8-24)22(31)17-26/h3-6,18-19,28H,7-17H2,1-2H3/t18-,19+,25+" NJ3 InChIKey InChI 1.06 JLJRLKQYLPGKGI-XMZFGDCGSA-N NJ3 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CC(C[C@@H](C)O1)(Nc2ccc(Cl)cc2)C(=O)N3CCC4(CCN(CC4)C(=O)CCl)CC3" NJ3 SMILES CACTVS 3.385 "C[CH]1CC(C[CH](C)O1)(Nc2ccc(Cl)cc2)C(=O)N3CCC4(CCN(CC4)C(=O)CCl)CC3" NJ3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CC(C[C@@H](O1)C)(C(=O)N2CCC3(CCN(CC3)C(=O)CCl)CC2)Nc4ccc(cc4)Cl" NJ3 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC(CC(O1)C)(C(=O)N2CCC3(CCN(CC3)C(=O)CCl)CC2)Nc4ccc(cc4)Cl" # _pdbx_chem_comp_identifier.comp_id NJ3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-chloranyl-1-[3-[(2~{R},6~{S})-4-[(4-chlorophenyl)amino]-2,6-dimethyl-oxan-4-yl]carbonyl-3,9-diazaspiro[5.5]undecan-9-yl]ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NJ3 "Create component" 2022-08-17 PDBE NJ3 "Initial release" 2023-09-20 RCSB NJ3 "Modify descriptor" 2023-09-23 RCSB #