data_NJ9 # _chem_comp.id NJ9 _chem_comp.name "3-(4-{[(5S)-3-(4-carbamimidoylphenyl)-2-oxo-1,3-oxazolidin-5-yl]methyl}piperazin-1-yl)propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H25 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-04 _chem_comp.pdbx_modified_date 2022-08-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 375.422 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NJ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UKP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NJ9 C4 C1 C 0 1 N N S 53.257 107.625 74.866 -0.141 0.487 0.443 C4 NJ9 1 NJ9 C5 C2 C 0 1 N N N 55.073 111.224 73.770 4.128 0.145 0.588 C5 NJ9 2 NJ9 C6 C3 C 0 1 N N N 53.304 111.676 72.106 4.139 -0.200 -1.808 C6 NJ9 3 NJ9 C7 C4 C 0 1 N N N 52.505 106.433 75.448 -1.550 1.107 0.369 C7 NJ9 4 NJ9 C8 C5 C 0 1 N N N 55.397 112.996 72.153 6.217 -0.264 -0.566 C8 NJ9 5 NJ9 C10 C6 C 0 1 Y N N 52.305 104.040 74.726 -3.836 -0.013 0.224 C10 NJ9 6 NJ9 C13 C7 C 0 1 Y N N 50.372 102.585 75.139 -5.936 -1.143 -0.037 C13 NJ9 7 NJ9 C15 C8 C 0 1 Y N N 51.196 101.446 75.026 -6.600 0.081 0.055 C15 NJ9 8 NJ9 C1 C9 C 0 1 N N N 52.373 108.665 74.148 0.697 0.918 -0.762 C1 NJ9 9 NJ9 C2 C10 C 0 1 N N N 52.380 110.758 72.929 2.787 0.509 -1.916 C2 NJ9 10 NJ9 C3 C11 C 0 1 N N N 54.057 110.371 74.545 2.775 0.854 0.480 C3 NJ9 11 NJ9 C12 C12 C 0 1 Y N N 53.124 102.894 74.619 -4.496 1.207 0.316 C12 NJ9 12 NJ9 C16 C13 C 0 1 N N N 50.640 100.101 75.185 -8.076 0.132 -0.035 C16 NJ9 13 NJ9 C11 C14 C 0 1 Y N N 50.925 103.869 74.992 -4.561 -1.187 0.048 C11 NJ9 14 NJ9 C14 C15 C 0 1 Y N N 52.572 101.612 74.768 -5.870 1.258 0.233 C14 NJ9 15 NJ9 C17 C16 C 0 1 N N N 54.790 113.745 70.957 7.045 0.490 0.476 C17 NJ9 16 NJ9 C18 C17 C 0 1 N N N 55.880 114.589 70.308 8.416 -0.128 0.572 C18 NJ9 17 NJ9 C9 C18 C 0 1 N N N 53.819 105.739 73.637 -1.702 -1.176 0.333 C9 NJ9 18 NJ9 N1 N1 N 0 1 N N N 53.198 109.718 73.555 2.034 0.315 -0.669 N1 NJ9 19 NJ9 N2 N2 N 0 1 N N N 54.395 112.250 72.938 4.881 0.338 -0.659 N2 NJ9 20 NJ9 N3 N3 N 0 1 N N N 52.877 105.339 74.579 -2.443 -0.060 0.304 N3 NJ9 21 NJ9 N4 N4 N 0 1 N N N 50.937 99.386 76.278 -8.731 1.341 0.056 N4 NJ9 22 NJ9 N5 N5 N 0 1 N N N 49.837 99.548 74.264 -8.757 -0.967 -0.200 N5 NJ9 23 NJ9 O1 O1 O 0 1 N N N 54.133 107.003 73.943 -0.386 -0.949 0.412 O1 NJ9 24 NJ9 O2 O2 O 0 1 N N N 54.302 105.107 72.692 -2.181 -2.292 0.292 O2 NJ9 25 NJ9 O3 O3 O 0 1 N N N 55.607 115.751 69.937 8.702 -1.075 -0.123 O3 NJ9 26 NJ9 O4 O4 O 0 1 N N N 56.993 114.034 70.211 9.320 0.373 1.428 O4 NJ9 27 NJ9 H1 H1 H 0 1 N N N 53.822 108.125 75.667 0.353 0.771 1.372 H1 NJ9 28 NJ9 H2 H2 H 0 1 N N N 55.667 110.568 73.116 4.691 0.563 1.422 H2 NJ9 29 NJ9 H3 H3 H 0 1 N N N 55.739 111.727 74.487 3.967 -0.920 0.755 H3 NJ9 30 NJ9 H4 H4 H 0 1 N N N 53.750 111.091 71.288 3.979 -1.269 -1.668 H4 NJ9 31 NJ9 H5 H5 H 0 1 N N N 52.706 112.498 71.686 4.711 -0.034 -2.720 H5 NJ9 32 NJ9 H6 H6 H 0 1 N N N 51.419 106.603 75.422 -1.756 1.697 1.262 H6 NJ9 33 NJ9 H7 H7 H 0 1 N N N 52.821 106.237 76.483 -1.653 1.720 -0.526 H7 NJ9 34 NJ9 H8 H8 H 0 1 N N N 56.147 112.285 71.777 6.711 -0.204 -1.536 H8 NJ9 35 NJ9 H9 H9 H 0 1 N N N 55.885 113.728 72.813 6.124 -1.309 -0.270 H9 NJ9 36 NJ9 H10 H10 H 0 1 N N N 49.317 102.471 75.338 -6.498 -2.054 -0.174 H10 NJ9 37 NJ9 H11 H11 H 0 1 N N N 51.680 109.114 74.875 0.212 0.586 -1.680 H11 NJ9 38 NJ9 H12 H12 H 0 1 N N N 51.799 108.165 73.354 0.788 2.004 -0.772 H12 NJ9 39 NJ9 H13 H13 H 0 1 N N N 51.869 111.346 73.706 2.947 1.574 -2.083 H13 NJ9 40 NJ9 H14 H14 H 0 1 N N N 51.633 110.295 72.268 2.223 0.091 -2.750 H14 NJ9 41 NJ9 H15 H15 H 0 1 N N N 53.453 111.011 75.205 2.203 0.687 1.392 H15 NJ9 42 NJ9 H16 H16 H 0 1 N N N 54.581 109.614 75.147 2.935 1.923 0.341 H16 NJ9 43 NJ9 H17 H17 H 0 1 N N N 54.180 103.005 74.422 -3.930 2.117 0.453 H17 NJ9 44 NJ9 H18 H18 H 0 1 N N N 50.289 104.737 75.083 -4.046 -2.133 -0.024 H18 NJ9 45 NJ9 H19 H19 H 0 1 N N N 53.208 100.743 74.684 -6.382 2.206 0.304 H19 NJ9 46 NJ9 H20 H20 H 0 1 N N N 53.974 114.396 71.303 7.138 1.535 0.180 H20 NJ9 47 NJ9 H21 H21 H 0 1 N N N 54.398 113.022 70.227 6.551 0.430 1.446 H21 NJ9 48 NJ9 H24 H24 H 0 1 N N N 51.536 99.771 76.980 -8.224 2.159 0.179 H24 NJ9 49 NJ9 H25 H25 H 0 1 N N N 50.560 98.467 76.392 -9.698 1.374 -0.002 H25 NJ9 50 NJ9 H26 H26 H 0 1 N N N 49.548 98.627 74.524 -9.724 -0.934 -0.259 H26 NJ9 51 NJ9 H27 H27 H 0 1 N N N 57.612 114.632 69.808 10.186 -0.057 1.454 H27 NJ9 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NJ9 O3 C18 DOUB N N 1 NJ9 O4 C18 SING N N 2 NJ9 C18 C17 SING N N 3 NJ9 C17 C8 SING N N 4 NJ9 C6 C2 SING N N 5 NJ9 C6 N2 SING N N 6 NJ9 C8 N2 SING N N 7 NJ9 O2 C9 DOUB N N 8 NJ9 C2 N1 SING N N 9 NJ9 N2 C5 SING N N 10 NJ9 N1 C1 SING N N 11 NJ9 N1 C3 SING N N 12 NJ9 C9 O1 SING N N 13 NJ9 C9 N3 SING N N 14 NJ9 C5 C3 SING N N 15 NJ9 O1 C4 SING N N 16 NJ9 C1 C4 SING N N 17 NJ9 N5 C16 DOUB N N 18 NJ9 N3 C10 SING N N 19 NJ9 N3 C7 SING N N 20 NJ9 C12 C10 DOUB Y N 21 NJ9 C12 C14 SING Y N 22 NJ9 C10 C11 SING Y N 23 NJ9 C14 C15 DOUB Y N 24 NJ9 C4 C7 SING N N 25 NJ9 C11 C13 DOUB Y N 26 NJ9 C15 C13 SING Y N 27 NJ9 C15 C16 SING N N 28 NJ9 C16 N4 SING N N 29 NJ9 C4 H1 SING N N 30 NJ9 C5 H2 SING N N 31 NJ9 C5 H3 SING N N 32 NJ9 C6 H4 SING N N 33 NJ9 C6 H5 SING N N 34 NJ9 C7 H6 SING N N 35 NJ9 C7 H7 SING N N 36 NJ9 C8 H8 SING N N 37 NJ9 C8 H9 SING N N 38 NJ9 C13 H10 SING N N 39 NJ9 C1 H11 SING N N 40 NJ9 C1 H12 SING N N 41 NJ9 C2 H13 SING N N 42 NJ9 C2 H14 SING N N 43 NJ9 C3 H15 SING N N 44 NJ9 C3 H16 SING N N 45 NJ9 C12 H17 SING N N 46 NJ9 C11 H18 SING N N 47 NJ9 C14 H19 SING N N 48 NJ9 C17 H20 SING N N 49 NJ9 C17 H21 SING N N 50 NJ9 N4 H24 SING N N 51 NJ9 N4 H25 SING N N 52 NJ9 N5 H26 SING N N 53 NJ9 O4 H27 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NJ9 SMILES ACDLabs 12.01 "N=C(N)c1ccc(cc1)N1CC(CN2CCN(CCC(=O)O)CC2)OC1=O" NJ9 InChI InChI 1.03 "InChI=1S/C18H25N5O4/c19-17(20)13-1-3-14(4-2-13)23-12-15(27-18(23)26)11-22-9-7-21(8-10-22)6-5-16(24)25/h1-4,15H,5-12H2,(H3,19,20)(H,24,25)/t15-/m0/s1" NJ9 InChIKey InChI 1.03 BILBLZKBVDSYSZ-HNNXBMFYSA-N NJ9 SMILES_CANONICAL CACTVS 3.385 "NC(=N)c1ccc(cc1)N2C[C@H](CN3CCN(CC3)CCC(O)=O)OC2=O" NJ9 SMILES CACTVS 3.385 "NC(=N)c1ccc(cc1)N2C[CH](CN3CCN(CC3)CCC(O)=O)OC2=O" NJ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\c1ccc(cc1)N2C[C@@H](OC2=O)CN3CCN(CC3)CCC(=O)O)/N" NJ9 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=N)N)N2CC(OC2=O)CN3CCN(CC3)CCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NJ9 "SYSTEMATIC NAME" ACDLabs 12.01 "3-(4-{[(5S)-3-(4-carbamimidoylphenyl)-2-oxo-1,3-oxazolidin-5-yl]methyl}piperazin-1-yl)propanoic acid" NJ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[4-[[(5~{S})-3-(4-carbamimidoylphenyl)-2-oxidanylidene-1,3-oxazolidin-5-yl]methyl]piperazin-1-yl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NJ9 "Create component" 2022-04-04 RCSB NJ9 "Initial release" 2022-08-17 RCSB #