data_NJI # _chem_comp.id NJI _chem_comp.name "2-chloranyl-1-[7-[4-[(4-chlorophenyl)amino]oxan-4-yl]carbonyl-2,7-diazaspiro[3.5]nonan-2-yl]ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 Cl2 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-17 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.363 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NJI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AR5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NJI O1 O1 O 0 1 N N N N N N -21.608 -26.113 -2.002 5.363 1.360 0.605 O1 NJI 1 NJI C1 C1 C 0 1 N N N N N N -21.163 -25.312 -2.807 4.946 0.338 0.103 C1 NJI 2 NJI C2 C2 C 0 1 N N N N N N -21.659 -25.150 -4.203 5.673 -0.963 0.328 C2 NJI 3 NJI N1 N1 N 0 1 N N N N N N -20.231 -24.431 -2.502 3.830 0.364 -0.652 N1 NJI 4 NJI C3 C3 C 0 1 N N N N N N -19.420 -23.490 -3.290 3.081 -0.604 -1.469 C3 NJI 5 NJI C4 C4 C 0 1 N N N N N N -18.710 -23.147 -1.952 1.827 0.230 -1.206 C4 NJI 6 NJI C5 C5 C 0 1 N N N N N N -17.298 -23.684 -1.727 0.917 0.387 -2.421 C5 NJI 7 NJI C6 C6 C 0 1 N N N N N N -16.247 -22.727 -2.158 0.152 -0.923 -2.647 C6 NJI 8 NJI N2 N2 N 0 1 N N N N N N -16.528 -21.416 -1.567 -0.503 -1.310 -1.390 N2 NJI 9 NJI C7 C7 C 0 1 N N N N N N -15.594 -20.903 -0.765 -1.833 -1.525 -1.351 C7 NJI 10 NJI O2 O2 O 0 1 N N N N N N -14.557 -21.544 -0.581 -2.482 -1.500 -2.375 O2 NJI 11 NJI C8 C8 C 0 1 N N N N N N -15.768 -19.510 -0.161 -2.514 -1.795 -0.034 C8 NJI 12 NJI N3 N3 N 0 1 N N N N N N -17.040 -19.346 0.522 -2.010 -0.863 0.978 N3 NJI 13 NJI C9 C9 C 0 1 Y N N N N N -17.603 -20.267 1.399 -2.168 0.514 0.801 C9 NJI 14 NJI C10 C10 C 0 1 Y N N N N N -18.927 -20.040 1.802 -1.816 1.392 1.818 C10 NJI 15 NJI C11 C11 C 0 1 Y N N N N N -19.561 -20.933 2.646 -1.973 2.752 1.640 C11 NJI 16 NJI C12 C12 C 0 1 Y N N N N N -18.891 -22.075 3.028 -2.481 3.241 0.449 C12 NJI 17 NJI CL2 CL1 CL 0 0 N N N N N N -19.690 -23.209 4.067 -2.676 4.952 0.228 CL2 NJI 18 NJI C13 C13 C 0 1 Y N N N N N -17.598 -22.335 2.651 -2.832 2.369 -0.566 C13 NJI 19 NJI C14 C14 C 0 1 Y N N N N N -16.959 -21.434 1.821 -2.672 1.008 -0.396 C14 NJI 20 NJI C15 C15 C 0 1 N N N N N N -15.657 -18.480 -1.300 -2.226 -3.234 0.406 C15 NJI 21 NJI C16 C16 C 0 1 N N N N N N -15.546 -17.086 -0.740 -2.985 -3.524 1.703 C16 NJI 22 NJI O3 O3 O 0 1 N N N N N N -14.441 -16.968 0.163 -4.382 -3.306 1.495 O3 NJI 23 NJI C17 C17 C 0 1 N N N N N N -14.593 -17.854 1.270 -4.716 -1.966 1.128 C17 NJI 24 NJI C18 C18 C 0 1 N N N N N N -14.592 -19.285 0.808 -4.026 -1.611 -0.192 C18 NJI 25 NJI C19 C19 C 0 1 N N N N N N -17.817 -20.843 -1.990 0.312 -1.461 -0.178 C19 NJI 26 NJI C20 C20 C 0 1 N N N N N N -18.910 -21.703 -1.495 1.079 -0.155 0.067 C20 NJI 27 NJI C21 C21 C 0 1 N N N N N N -19.698 -24.052 -1.202 2.822 1.372 -1.016 C21 NJI 28 NJI H1 H1 H 0 1 N N N N N N -22.726 -24.882 -4.186 4.978 -1.702 0.729 H1 NJI 29 NJI H2 H2 H 0 1 N N N N N N -21.089 -24.355 -4.706 6.079 -1.321 -0.618 H2 NJI 30 NJI CL1 CL2 CL 0 0 N Y N N N N -21.530 -26.072 -4.731 7.018 -0.705 1.500 CL1 NJI 31 NJI H4 H4 H 0 1 N N N N N N -18.776 -23.956 -4.051 3.384 -0.615 -2.516 H4 NJI 32 NJI H5 H5 H 0 1 N N N N N N -19.982 -22.660 -3.743 3.039 -1.602 -1.031 H5 NJI 33 NJI H6 H6 H 0 1 N N N N N N -17.181 -24.617 -2.298 0.209 1.196 -2.244 H6 NJI 34 NJI H7 H7 H 0 1 N N N N N N -17.167 -23.892 -0.655 1.520 0.614 -3.300 H7 NJI 35 NJI H8 H8 H 0 1 N N N N N N -15.263 -23.082 -1.818 -0.601 -0.777 -3.422 H8 NJI 36 NJI H9 H9 H 0 1 N N N N N N -16.249 -22.646 -3.255 0.848 -1.705 -2.953 H9 NJI 37 NJI H10 H10 H 0 1 N N N N N N -16.953 -18.499 1.046 -1.567 -1.202 1.772 H10 NJI 38 NJI H11 H11 H 0 1 N N N N N N -19.453 -19.164 1.452 -1.420 1.011 2.748 H11 NJI 39 NJI H12 H12 H 0 1 N N N N N N -20.563 -20.739 2.999 -1.700 3.435 2.430 H12 NJI 40 NJI H13 H13 H 0 1 N N N N N N -17.091 -23.224 2.995 -3.229 2.753 -1.495 H13 NJI 41 NJI H14 H14 H 0 1 N N N N N N -15.949 -21.634 1.494 -2.942 0.328 -1.190 H14 NJI 42 NJI H15 H15 H 0 1 N N N N N N -16.552 -18.545 -1.936 -2.555 -3.924 -0.371 H15 NJI 43 NJI H16 H16 H 0 1 N N N N N N -14.763 -18.701 -1.902 -1.156 -3.356 0.575 H16 NJI 44 NJI H17 H17 H 0 1 N N N N N N -15.406 -16.378 -1.570 -2.819 -4.560 1.998 H17 NJI 45 NJI H18 H18 H 0 1 N N N N N N -16.474 -16.842 -0.202 -2.628 -2.860 2.490 H18 NJI 46 NJI H19 H19 H 0 1 N N N N N N -13.761 -17.701 1.973 -5.796 -1.880 1.009 H19 NJI 47 NJI H20 H20 H 0 1 N N N N N N -15.545 -17.639 1.777 -4.381 -1.282 1.908 H20 NJI 48 NJI H21 H21 H 0 1 N N N N N N -14.699 -19.951 1.677 -4.242 -0.575 -0.450 H21 NJI 49 NJI H22 H22 H 0 1 N N N N N N -13.645 -19.504 0.293 -4.392 -2.268 -0.981 H22 NJI 50 NJI H23 H23 H 0 1 N N N N N N -17.926 -19.831 -1.572 -0.335 -1.669 0.674 H23 NJI 51 NJI H24 H24 H 0 1 N N N N N N -17.856 -20.793 -3.088 1.018 -2.280 -0.312 H24 NJI 52 NJI H25 H25 H 0 1 N N N N N N -18.925 -21.671 -0.396 1.791 -0.298 0.879 H25 NJI 53 NJI H26 H26 H 0 1 N N N N N N -19.868 -21.330 -1.886 0.377 0.636 0.330 H26 NJI 54 NJI H27 H27 H 0 1 N N N N N N -20.407 -23.519 -0.552 2.561 2.042 -0.196 H27 NJI 55 NJI H28 H28 H 0 1 N N N N N N -19.232 -24.874 -0.639 3.053 1.905 -1.939 H28 NJI 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NJI C2 C1 SING N N 1 NJI C3 N1 SING N N 2 NJI C3 C4 SING N N 3 NJI C1 N1 SING N N 4 NJI C1 O1 DOUB N N 5 NJI N1 C21 SING N N 6 NJI C6 C5 SING N N 7 NJI C6 N2 SING N N 8 NJI C19 N2 SING N N 9 NJI C19 C20 SING N N 10 NJI C4 C5 SING N N 11 NJI C4 C20 SING N N 12 NJI C4 C21 SING N N 13 NJI N2 C7 SING N N 14 NJI C15 C16 SING N N 15 NJI C15 C8 SING N N 16 NJI C7 O2 DOUB N N 17 NJI C7 C8 SING N N 18 NJI C16 O3 SING N N 19 NJI C8 N3 SING N N 20 NJI C8 C18 SING N N 21 NJI O3 C17 SING N N 22 NJI N3 C9 SING N N 23 NJI C18 C17 SING N N 24 NJI C9 C10 DOUB Y N 25 NJI C9 C14 SING Y N 26 NJI C10 C11 SING Y N 27 NJI C14 C13 DOUB Y N 28 NJI C11 C12 DOUB Y N 29 NJI C13 C12 SING Y N 30 NJI C12 CL2 SING N N 31 NJI C2 H1 SING N N 32 NJI C2 H2 SING N N 33 NJI C2 CL1 SING N N 34 NJI C3 H4 SING N N 35 NJI C3 H5 SING N N 36 NJI C5 H6 SING N N 37 NJI C5 H7 SING N N 38 NJI C6 H8 SING N N 39 NJI C6 H9 SING N N 40 NJI N3 H10 SING N N 41 NJI C10 H11 SING N N 42 NJI C11 H12 SING N N 43 NJI C13 H13 SING N N 44 NJI C14 H14 SING N N 45 NJI C15 H15 SING N N 46 NJI C15 H16 SING N N 47 NJI C16 H17 SING N N 48 NJI C16 H18 SING N N 49 NJI C17 H19 SING N N 50 NJI C17 H20 SING N N 51 NJI C18 H21 SING N N 52 NJI C18 H22 SING N N 53 NJI C19 H23 SING N N 54 NJI C19 H24 SING N N 55 NJI C20 H25 SING N N 56 NJI C20 H26 SING N N 57 NJI C21 H27 SING N N 58 NJI C21 H28 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NJI InChI InChI 1.06 "InChI=1S/C21H27Cl2N3O3/c22-13-18(27)26-14-20(15-26)5-9-25(10-6-20)19(28)21(7-11-29-12-8-21)24-17-3-1-16(23)2-4-17/h1-4,24H,5-15H2" NJI InChIKey InChI 1.06 IPRLKWXVJOVXSN-UHFFFAOYSA-N NJI SMILES_CANONICAL CACTVS 3.385 "ClCC(=O)N1CC2(CCN(CC2)C(=O)C3(CCOCC3)Nc4ccc(Cl)cc4)C1" NJI SMILES CACTVS 3.385 "ClCC(=O)N1CC2(CCN(CC2)C(=O)C3(CCOCC3)Nc4ccc(Cl)cc4)C1" NJI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1NC2(CCOCC2)C(=O)N3CCC4(CC3)CN(C4)C(=O)CCl)Cl" NJI SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1NC2(CCOCC2)C(=O)N3CCC4(CC3)CN(C4)C(=O)CCl)Cl" # _pdbx_chem_comp_identifier.comp_id NJI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-chloranyl-1-[7-[4-[(4-chlorophenyl)amino]oxan-4-yl]carbonyl-2,7-diazaspiro[3.5]nonan-2-yl]ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NJI "Create component" 2022-08-17 PDBE NJI "Initial release" 2023-09-20 RCSB NJI "Modify descriptor" 2023-09-23 RCSB NJI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id NJI _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #