data_NM6 # _chem_comp.id NM6 _chem_comp.name "2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucopyranose" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C11 H20 N2 O7" _chem_comp.mon_nstd_parent_comp_id NAG _chem_comp.pdbx_synonyms ;(2R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-2-(hydroxymethyl)-3,6-bis(oxidanyl)oxan-4-yl]oxypropanamide; N-acetyl-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-beta-D-glucosamine; 2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucose; 2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-D-glucose; 2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-glucose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-19 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 292.286 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NM6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CFO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 NM6 "(2R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-2-(hydroxymethyl)-3,6-bis(oxidanyl)oxan-4-yl]oxypropanamide" PDB ? 2 NM6 "N-acetyl-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-beta-D-glucosamine" PDB ? 3 NM6 "2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucose" PDB ? 4 NM6 "2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-D-glucose" PDB ? 5 NM6 "2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-glucose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NM6 O4 O4 O 0 1 N N N -2.620 23.497 -13.660 1.516 2.673 0.095 O4 NM6 1 NM6 C3A C3A C 0 1 N N R -2.052 25.312 -16.000 -2.019 1.408 -0.474 C3A NM6 2 NM6 C1 C1 C 0 1 N N R -0.244 26.318 -11.816 1.541 -1.462 -0.488 C1 NM6 3 NM6 C3B C3B C 0 1 N N N -1.763 24.460 -17.176 -1.915 2.791 -1.121 C3B NM6 4 NM6 C2 C2 C 0 1 N N R 0.104 25.995 -13.233 0.258 -0.865 0.097 C2 NM6 5 NM6 C3C C3C C 0 1 N N N -2.211 26.510 -16.481 -3.317 1.306 0.285 C3C NM6 6 NM6 C3 C3 C 0 1 N N R -1.135 25.388 -13.837 0.233 0.641 -0.181 C3 NM6 7 NM6 C4 C4 C 0 1 N N S -1.486 24.104 -13.103 1.494 1.279 0.410 C4 NM6 8 NM6 N3A N3A N 0 1 N N N -3.354 27.120 -16.098 -4.490 1.350 -0.377 N3A NM6 9 NM6 O7 OAP O 0 1 N N N 1.868 26.405 -15.240 -0.978 -3.068 1.037 O7 NM6 10 NM6 O3B O3B O 0 1 N N N -1.487 27.138 -17.225 -3.306 1.182 1.492 O3B NM6 11 NM6 O3 O3A O 0 1 N N N -0.980 25.053 -15.121 -0.925 1.219 0.426 O3 NM6 12 NM6 C5 C5 C 0 1 N N R -1.844 24.558 -11.738 2.728 0.599 -0.187 C5 NM6 13 NM6 C6 C5B C 0 1 N N N -2.199 23.410 -10.913 3.991 1.190 0.443 C6 NM6 14 NM6 C7 C2A C 0 1 N N N 1.294 27.312 -14.847 -1.451 -2.600 0.024 C7 NM6 15 NM6 C8 C2B C 0 1 N N N 1.577 28.601 -15.477 -2.649 -3.250 -0.619 C8 NM6 16 NM6 N2 N2A N 0 1 N N N 0.385 27.202 -13.840 -0.906 -1.498 -0.528 N2 NM6 17 NM6 O6 O5B O 0 1 N N N -1.018 23.137 -10.317 5.145 0.640 -0.196 O6 NM6 18 NM6 O5 O6 O 0 1 N N N -0.725 25.187 -11.187 2.674 -0.803 0.080 O5 NM6 19 NM6 O1 O1 O 0 1 N Y N 0.874 26.810 -11.091 1.598 -2.857 -0.185 O1 NM6 20 NM6 H4 HAZ H 0 1 N N N -0.620 23.426 -13.078 1.494 1.151 1.493 H4 NM6 21 NM6 HAQ HAQ H 0 1 N N N -2.985 24.953 -15.541 -1.989 0.642 -1.248 HAQ NM6 22 NM6 HAT1 HAT1 H 0 0 N N N -1.615 23.420 -16.849 -2.026 3.559 -0.355 HAT1 NM6 23 NM6 HAT2 HAT2 H 0 0 N N N -2.608 24.506 -17.879 -0.942 2.895 -1.601 HAT2 NM6 24 NM6 HAT3 HAT3 H 0 0 N N N -0.851 24.821 -17.675 -2.702 2.904 -1.866 HAT3 NM6 25 NM6 H1 H1A H 0 1 N N N -1.027 27.090 -11.828 1.545 -1.325 -1.570 H1 NM6 26 NM6 H2 HAU H 0 1 N N N 0.946 25.289 -13.280 0.234 -1.038 1.173 H2 NM6 27 NM6 HO1 HX0 H 0 1 N Y N 0.613 27.003 -10.198 2.386 -3.302 -0.526 HO1 NM6 28 NM6 H3 H3A H 0 1 N N N -1.967 26.096 -13.713 0.207 0.813 -1.257 H3 NM6 29 NM6 HN2 H2N H 0 1 N N N -0.095 28.023 -13.530 -1.285 -1.123 -1.339 HN2 NM6 30 NM6 HAS1 HAS1 H 0 0 N N N -3.564 28.041 -16.427 -4.499 1.449 -1.342 HAS1 NM6 31 NM6 HAS2 HAS2 H 0 0 N N N -3.990 26.651 -15.485 -5.325 1.284 0.112 HAS2 NM6 32 NM6 H5 HBA H 0 1 N N N -2.694 25.254 -11.794 2.748 0.764 -1.264 H5 NM6 33 NM6 H61 HBB1 H 0 1 N N N -2.972 23.668 -10.175 3.988 2.273 0.317 H61 NM6 34 NM6 H62 HBB2 H 0 1 N N N -2.545 22.565 -11.526 4.015 0.948 1.506 H62 NM6 35 NM6 HO6 HBC H 0 1 N Y N -1.120 22.390 -9.739 5.984 0.970 0.153 HO6 NM6 36 NM6 H81 HBE1 H 0 1 N N N 2.335 28.467 -16.263 -3.561 -2.817 -0.210 H81 NM6 37 NM6 H82 HBE2 H 0 1 N N N 0.654 29.002 -15.922 -2.618 -3.084 -1.696 H82 NM6 38 NM6 H83 HBE3 H 0 1 N N N 1.955 29.304 -14.720 -2.633 -4.321 -0.416 H83 NM6 39 NM6 HO4 H4 H 0 1 N Y N -2.818 22.699 -13.185 2.289 3.141 0.439 HO4 NM6 40 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NM6 O4 C4 SING N N 1 NM6 C3A C3B SING N N 2 NM6 C3A C3C SING N N 3 NM6 C3A O3 SING N N 4 NM6 C1 C2 SING N N 5 NM6 C1 O5 SING N N 6 NM6 C1 O1 SING N N 7 NM6 C2 C3 SING N N 8 NM6 C2 N2 SING N N 9 NM6 C3C N3A SING N N 10 NM6 C3C O3B DOUB N N 11 NM6 C3 C4 SING N N 12 NM6 C3 O3 SING N N 13 NM6 C4 C5 SING N N 14 NM6 O7 C7 DOUB N N 15 NM6 C5 C6 SING N N 16 NM6 C5 O5 SING N N 17 NM6 C6 O6 SING N N 18 NM6 C7 C8 SING N N 19 NM6 C7 N2 SING N N 20 NM6 C4 H4 SING N N 21 NM6 C3A HAQ SING N N 22 NM6 C3B HAT1 SING N N 23 NM6 C3B HAT2 SING N N 24 NM6 C3B HAT3 SING N N 25 NM6 C1 H1 SING N N 26 NM6 C2 H2 SING N N 27 NM6 O1 HO1 SING N N 28 NM6 C3 H3 SING N N 29 NM6 N2 HN2 SING N N 30 NM6 N3A HAS1 SING N N 31 NM6 N3A HAS2 SING N N 32 NM6 C5 H5 SING N N 33 NM6 C6 H61 SING N N 34 NM6 C6 H62 SING N N 35 NM6 O6 HO6 SING N N 36 NM6 C8 H81 SING N N 37 NM6 C8 H82 SING N N 38 NM6 C8 H83 SING N N 39 NM6 O4 HO4 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NM6 SMILES ACDLabs 12.01 "O=C(N)C(OC1C(O)C(OC(O)C1NC(=O)C)CO)C" NM6 InChI InChI 1.03 "InChI=1S/C11H20N2O7/c1-4(10(12)17)19-9-7(13-5(2)15)11(18)20-6(3-14)8(9)16/h4,6-9,11,14,16,18H,3H2,1-2H3,(H2,12,17)(H,13,15)/t4-,6-,7-,8-,9-,11-/m1/s1" NM6 InChIKey InChI 1.03 MLHXTMGNPGMLSD-YVNCZSHWSA-N NM6 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O[C@H]1[C@H](O)[C@@H](CO)O[C@@H](O)[C@@H]1NC(C)=O)C(N)=O" NM6 SMILES CACTVS 3.385 "C[CH](O[CH]1[CH](O)[CH](CO)O[CH](O)[CH]1NC(C)=O)C(N)=O" NM6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](C(=O)N)O[C@@H]1[C@H]([C@@H](O[C@@H]([C@H]1O)CO)O)NC(=O)C" NM6 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(=O)N)OC1C(C(OC(C1O)CO)O)NC(=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NM6 "SYSTEMATIC NAME" ACDLabs 12.01 "2-(acetylamino)-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucopyranose" NM6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-2-(hydroxymethyl)-3,6-bis(oxidanyl)oxan-4-yl]oxypropanamide" # _pdbx_chem_comp_related.comp_id NM6 _pdbx_chem_comp_related.related_comp_id NAG _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 NM6 C1 NAG C1 "Carbohydrate core" 2 NM6 C2 NAG C2 "Carbohydrate core" 3 NM6 C7 NAG C7 "Carbohydrate core" 4 NM6 C8 NAG C8 "Carbohydrate core" 5 NM6 C3 NAG C3 "Carbohydrate core" 6 NM6 C4 NAG C4 "Carbohydrate core" 7 NM6 C5 NAG C5 "Carbohydrate core" 8 NM6 C6 NAG C6 "Carbohydrate core" 9 NM6 N2 NAG N2 "Carbohydrate core" 10 NM6 O1 NAG O1 "Carbohydrate core" 11 NM6 O3 NAG O3 "Carbohydrate core" 12 NM6 O4 NAG O4 "Carbohydrate core" 13 NM6 O6 NAG O6 "Carbohydrate core" 14 NM6 O5 NAG O5 "Carbohydrate core" 15 NM6 O7 NAG O7 "Carbohydrate core" 16 NM6 H1 NAG H1 "Carbohydrate core" 17 NM6 HN2 NAG HN2 "Carbohydrate core" 18 NM6 H3 NAG H3 "Carbohydrate core" 19 NM6 HO4 NAG HO4 "Carbohydrate core" 20 NM6 H2 NAG H2 "Carbohydrate core" 21 NM6 H4 NAG H4 "Carbohydrate core" 22 NM6 H5 NAG H5 "Carbohydrate core" 23 NM6 H61 NAG H61 "Carbohydrate core" 24 NM6 H62 NAG H62 "Carbohydrate core" 25 NM6 HO6 NAG HO6 "Carbohydrate core" 26 NM6 H81 NAG H81 "Carbohydrate core" 27 NM6 H82 NAG H82 "Carbohydrate core" 28 NM6 H83 NAG H83 "Carbohydrate core" 29 NM6 HO1 NAG HO1 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support NM6 "CARBOHYDRATE ISOMER" D PDB ? NM6 "CARBOHYDRATE RING" pyranose PDB ? NM6 "CARBOHYDRATE ANOMER" beta PDB ? NM6 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NM6 "Create component" 2013-11-19 EBI NM6 "Initial release" 2014-07-23 RCSB NM6 "Other modification" 2014-07-24 EBI NM6 "Other modification" 2020-07-03 RCSB NM6 "Modify parent residue" 2020-07-17 RCSB NM6 "Modify name" 2020-07-17 RCSB NM6 "Modify synonyms" 2020-07-17 RCSB NM6 "Modify linking type" 2020-07-17 RCSB NM6 "Modify atom id" 2020-07-17 RCSB NM6 "Modify component atom id" 2020-07-17 RCSB NM6 "Modify leaving atom flag" 2020-07-17 RCSB ##