data_NMP # _chem_comp.id NMP _chem_comp.name "2-[2-(2-CYCLOHEXYL-2-GUANIDINO-ACETYLAMINO)-ACETYLAMINO]-N-(3-MERCAPTO-PROPYL)-PROPIONAMIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H32 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-07-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.539 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NMP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1M4B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NMP S27 S27 S 0 1 N N N N N N 23.582 -10.924 -1.682 -1.056 -0.190 -10.213 S27 NMP 1 NMP C26 C26 C 0 1 N N N N N N 22.329 -9.781 -2.307 -0.416 -1.001 -8.722 C26 NMP 2 NMP C25 C25 C 0 1 N N N N N N 20.917 -10.218 -1.945 -0.404 -0.001 -7.563 C25 NMP 3 NMP C24 C24 C 0 1 N N N N N N 19.885 -9.416 -2.728 0.134 -0.685 -6.305 C24 NMP 4 NMP N23 N23 N 0 1 N N N N N N 19.481 -8.219 -2.018 0.145 0.271 -5.196 N23 NMP 5 NMP C20 C20 C 0 1 N N N N N N 20.009 -7.030 -2.301 0.584 -0.111 -3.981 C20 NMP 6 NMP O21 O21 O 0 1 N N N N N N 20.805 -6.843 -3.206 0.969 -1.247 -3.805 O21 NMP 7 NMP C19 C19 C 0 1 N N S N N N 19.583 -5.887 -1.433 0.595 0.873 -2.839 C19 NMP 8 NMP C22 C22 C 0 1 N N N N N N 18.513 -5.082 -2.156 1.491 2.060 -3.199 C22 NMP 9 NMP N18 N18 N 0 1 N N N N N N 20.710 -5.037 -1.104 1.112 0.218 -1.635 N18 NMP 10 NMP C16 C16 C 0 1 N N N N N N 21.776 -5.510 -0.464 0.689 0.616 -0.418 C16 NMP 11 NMP O17 O17 O 0 1 N N N N N N 21.920 -6.686 -0.171 -0.117 1.515 -0.321 O17 NMP 12 NMP C15 C15 C 0 1 N N N N N N 22.840 -4.504 -0.101 1.221 -0.057 0.820 C15 NMP 13 NMP N14 N14 N 0 1 N N N N N N 24.164 -5.010 -0.398 0.612 0.551 2.005 N14 NMP 14 NMP C6 C6 C 0 1 N N N N N N 24.824 -4.576 -1.466 0.940 0.106 3.235 C6 NMP 15 NMP O7 O7 O 0 1 N N N N N N 24.482 -3.593 -2.107 1.739 -0.797 3.359 O7 NMP 16 NMP C5 C5 C 0 1 N N R N N N 26.028 -5.368 -1.864 0.314 0.732 4.454 C5 NMP 17 NMP N4 N4 N 0 1 N N N N N N 27.211 -4.538 -1.944 1.249 0.651 5.579 N4 NMP 18 NMP C2 C2 C 0 1 N N N N N N 27.989 -4.349 -0.882 1.687 -0.573 6.022 C2 NMP 19 NMP N3 N3 N 0 1 N N N N N N 27.677 -4.905 0.289 2.565 -0.649 7.078 N3 NMP 20 NMP N1 N1 N 0 1 N N N N N N 29.087 -3.609 -0.989 1.271 -1.663 5.442 N1 NMP 21 NMP C8 C8 C 0 1 N N N N N N 25.765 -6.007 -3.217 -0.973 -0.015 4.807 C8 NMP 22 NMP C9 C9 C 0 1 N N N N N N 26.764 -7.121 -3.488 -1.608 0.620 6.045 C9 NMP 23 NMP C10 C10 C 0 1 N N N N N N 26.550 -7.677 -4.887 -2.896 -0.127 6.398 C10 NMP 24 NMP C11 C11 C 0 1 N N N N N N 25.126 -8.197 -5.037 -3.872 -0.043 5.223 C11 NMP 25 NMP C12 C12 C 0 1 N N N N N N 24.093 -7.128 -4.695 -3.237 -0.678 3.985 C12 NMP 26 NMP C13 C13 C 0 1 N N N N N N 24.348 -6.555 -3.306 -1.949 0.068 3.632 C13 NMP 27 NMP H27 H27 H 0 1 N N N N N N 24.463 -10.651 -1.908 -0.983 -1.213 -11.084 H27 NMP 28 NMP H261 1H26 H 0 0 N N N N N N 22.528 -8.738 -1.964 0.598 -1.354 -8.907 H261 NMP 29 NMP H262 2H26 H 0 0 N N N N N N 22.434 -9.630 -3.406 -1.054 -1.846 -8.466 H262 NMP 30 NMP H251 1H25 H 0 0 N N N N N N 20.777 -11.315 -2.081 -1.419 0.351 -7.378 H251 NMP 31 NMP H252 2H25 H 0 0 N N N N N N 20.736 -10.161 -0.846 0.233 0.844 -7.819 H252 NMP 32 NMP H241 1H24 H 0 0 N N N N N N 20.250 -9.175 -3.753 1.149 -1.038 -6.491 H241 NMP 33 NMP H242 2H24 H 0 0 N N N N N N 19.004 -10.043 -2.999 -0.503 -1.531 -6.049 H242 NMP 34 NMP H23 H23 H 0 1 N N N N N N 18.783 -8.213 -1.274 -0.162 1.180 -5.337 H23 NMP 35 NMP H19 H19 H 0 1 N N N N N N 19.169 -6.292 -0.479 -0.419 1.226 -2.654 H19 NMP 36 NMP H221 1H22 H 0 0 N N N N N N 18.195 -4.230 -1.509 2.505 1.707 -3.384 H221 NMP 37 NMP H222 2H22 H 0 0 N N N N N N 18.846 -4.745 -3.165 1.106 2.547 -4.095 H222 NMP 38 NMP H223 3H22 H 0 0 N N N N N N 17.652 -5.713 -2.476 1.499 2.772 -2.373 H223 NMP 39 NMP H18 H18 H 0 1 N N N N N N 20.755 -4.045 -1.337 1.757 -0.500 -1.713 H18 NMP 40 NMP H151 1H15 H 0 0 N N N N N N 22.657 -3.519 -0.592 0.976 -1.119 0.790 H151 NMP 41 NMP H152 2H15 H 0 0 N N N N N N 22.753 -4.182 0.963 2.303 0.064 0.864 H152 NMP 42 NMP H14 H14 H 0 1 N N N N N N 24.652 -5.702 0.169 -0.026 1.273 1.906 H14 NMP 43 NMP H5 H5 H 0 1 N N N N N N 26.211 -6.147 -1.088 0.083 1.777 4.248 H5 NMP 44 NMP H4 H4 H 0 1 N N N N N N 26.932 -3.623 -2.299 1.559 1.462 6.011 H4 NMP 45 NMP H31 1H3 H 0 1 N N N N N N 28.273 -4.760 1.103 2.874 -1.513 7.391 H31 NMP 46 NMP H32 2H3 H 0 1 N N N N N N 27.565 -5.909 0.147 2.875 0.161 7.510 H32 NMP 47 NMP H1 H1 H 0 1 N N N N N N 30.000 -4.055 -0.906 1.580 -2.528 5.755 H1 NMP 48 NMP H8 H8 H 0 1 N N N N N N 25.884 -5.212 -3.990 -0.741 -1.060 5.013 H8 NMP 49 NMP H91 1H9 H 0 1 N N N N N N 27.816 -6.789 -3.325 -0.912 0.560 6.882 H91 NMP 50 NMP H92 2H9 H 0 1 N N N N N N 26.723 -7.918 -2.709 -1.840 1.665 5.839 H92 NMP 51 NMP H101 1H10 H 0 0 N N N N N N 26.805 -6.930 -5.674 -2.664 -1.172 6.604 H101 NMP 52 NMP H102 2H10 H 0 0 N N N N N N 27.306 -8.454 -5.145 -3.349 0.325 7.280 H102 NMP 53 NMP H111 1H11 H 0 0 N N N N N N 24.952 -8.617 -6.054 -4.790 -0.575 5.475 H111 NMP 54 NMP H112 2H11 H 0 0 N N N N N N 24.966 -9.122 -4.435 -4.104 1.001 5.017 H112 NMP 55 NMP H121 1H12 H 0 0 N N N N N N 24.054 -6.328 -5.470 -3.006 -1.723 4.191 H121 NMP 56 NMP H122 2H12 H 0 0 N N N N N N 23.051 -7.512 -4.798 -3.933 -0.618 3.148 H122 NMP 57 NMP H131 1H13 H 0 0 N N N N N N 24.137 -7.299 -2.502 -2.181 1.113 3.426 H131 NMP 58 NMP H132 2H13 H 0 0 N N N N N N 23.586 -5.790 -3.024 -1.496 -0.383 2.750 H132 NMP 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NMP S27 C26 SING N N 1 NMP S27 H27 SING N N 2 NMP C26 C25 SING N N 3 NMP C26 H261 SING N N 4 NMP C26 H262 SING N N 5 NMP C25 C24 SING N N 6 NMP C25 H251 SING N N 7 NMP C25 H252 SING N N 8 NMP C24 N23 SING N N 9 NMP C24 H241 SING N N 10 NMP C24 H242 SING N N 11 NMP N23 C20 SING N N 12 NMP N23 H23 SING N N 13 NMP C20 O21 DOUB N N 14 NMP C20 C19 SING N N 15 NMP C19 C22 SING N N 16 NMP C19 N18 SING N N 17 NMP C19 H19 SING N N 18 NMP C22 H221 SING N N 19 NMP C22 H222 SING N N 20 NMP C22 H223 SING N N 21 NMP N18 C16 SING N N 22 NMP N18 H18 SING N N 23 NMP C16 O17 DOUB N N 24 NMP C16 C15 SING N N 25 NMP C15 N14 SING N N 26 NMP C15 H151 SING N N 27 NMP C15 H152 SING N N 28 NMP N14 C6 SING N N 29 NMP N14 H14 SING N N 30 NMP C6 O7 DOUB N N 31 NMP C6 C5 SING N N 32 NMP C5 N4 SING N N 33 NMP C5 C8 SING N N 34 NMP C5 H5 SING N N 35 NMP N4 C2 SING N N 36 NMP N4 H4 SING N N 37 NMP C2 N3 SING N N 38 NMP C2 N1 DOUB N N 39 NMP N3 H31 SING N N 40 NMP N3 H32 SING N N 41 NMP N1 H1 SING N N 42 NMP C8 C9 SING N N 43 NMP C8 C13 SING N N 44 NMP C8 H8 SING N N 45 NMP C9 C10 SING N N 46 NMP C9 H91 SING N N 47 NMP C9 H92 SING N N 48 NMP C10 C11 SING N N 49 NMP C10 H101 SING N N 50 NMP C10 H102 SING N N 51 NMP C11 C12 SING N N 52 NMP C11 H111 SING N N 53 NMP C11 H112 SING N N 54 NMP C12 C13 SING N N 55 NMP C12 H121 SING N N 56 NMP C12 H122 SING N N 57 NMP C13 H131 SING N N 58 NMP C13 H132 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NMP SMILES ACDLabs 10.04 "O=C(NCCCS)C(NC(=O)CNC(=O)C(NC(=[N@H])N)C1CCCCC1)C" NMP SMILES_CANONICAL CACTVS 3.341 "C[C@H](NC(=O)CNC(=O)[C@H](NC(N)=N)C1CCCCC1)C(=O)NCCCS" NMP SMILES CACTVS 3.341 "C[CH](NC(=O)CNC(=O)[CH](NC(N)=N)C1CCCCC1)C(=O)NCCCS" NMP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H](C(=O)NCCCS)NC(=O)CNC(=O)[C@@H](C1CCCCC1)NC(=N)N" NMP SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(=O)NCCCS)NC(=O)CNC(=O)C(C1CCCCC1)NC(=N)N" NMP InChI InChI 1.03 "InChI=1S/C17H32N6O3S/c1-11(15(25)20-8-5-9-27)22-13(24)10-21-16(26)14(23-17(18)19)12-6-3-2-4-7-12/h11-12,14,27H,2-10H2,1H3,(H,20,25)(H,21,26)(H,22,24)(H4,18,19,23)/t11-,14+/m0/s1" NMP InChIKey InChI 1.03 YLLNYDDZOMCFDE-SMDDNHRTSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NMP "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(2R)-2-carbamimidamido-2-cyclohexylacetyl]glycyl-N-(3-sulfanylpropyl)-L-alaninamide" NMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[2-[[(2R)-2-carbamimidamido-2-cyclohexyl-ethanoyl]amino]ethanoylamino]-N-(3-sulfanylpropyl)propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NMP "Create component" 2002-07-09 RCSB NMP "Modify descriptor" 2011-06-04 RCSB NMP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id NMP _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom S27 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #