data_NOC # _chem_comp.id NOC _chem_comp.name "3-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-CYCLOPENTANE-1,2-DIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms NEPLANOCIN _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-04-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 265.269 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NOC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1LI4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NOC "C6'" C6* C 0 1 N N N 42.970 -18.880 104.403 -3.990 1.443 0.828 "C6'" NOC 1 NOC "O6'" O6* O 0 1 N N N 42.773 -20.043 105.278 -5.341 0.999 0.683 "O6'" NOC 2 NOC "C5'" C5* C 0 1 N N N 44.940 -19.713 103.169 -1.607 0.685 1.089 "C5'" NOC 3 NOC "C4'" C4* C 0 1 N N S 44.337 -18.810 104.019 -3.052 0.235 0.809 "C4'" NOC 4 NOC "C3'" C3* C 0 1 N N S 45.303 -17.847 104.579 -3.048 -0.410 -0.593 "C3'" NOC 5 NOC "O3'" O3* O 0 1 N N N 45.087 -16.826 105.188 -3.925 -1.537 -0.627 "O3'" NOC 6 NOC "C2'" C2* C 0 1 N N S 46.479 -17.987 103.665 -1.578 -0.854 -0.805 "C2'" NOC 7 NOC "O2'" O2* O 0 1 N N N 47.654 -17.686 104.402 -1.278 -0.964 -2.198 "O2'" NOC 8 NOC "C1'" C1* C 0 1 N N R 46.428 -19.482 103.152 -0.776 0.298 -0.152 "C1'" NOC 9 NOC N9 N9 N 0 1 Y N N 47.150 -19.896 101.959 0.555 -0.165 0.247 N9 NOC 10 NOC C8 C8 C 0 1 Y N N 47.033 -19.364 100.676 0.830 -1.208 1.081 C8 NOC 11 NOC N7 N7 N 0 1 Y N N 47.797 -19.954 99.824 2.118 -1.341 1.216 N7 NOC 12 NOC C5 C5 C 0 1 Y N N 48.481 -20.942 100.541 2.749 -0.398 0.476 C5 NOC 13 NOC C6 C6 C 0 1 Y N N 49.473 -21.939 100.216 4.093 -0.058 0.246 C6 NOC 14 NOC N6 N6 N 0 1 N N N 49.987 -22.092 98.954 5.116 -0.776 0.840 N6 NOC 15 NOC N1 N1 N 0 1 Y N N 49.889 -22.751 101.283 4.359 0.965 -0.559 N1 NOC 16 NOC C2 C2 C 0 1 Y N N 49.406 -22.610 102.502 3.389 1.656 -1.130 C2 NOC 17 NOC N3 N3 N 0 1 Y N N 48.482 -21.717 102.928 2.117 1.377 -0.939 N3 NOC 18 NOC C4 C4 C 0 1 Y N N 48.043 -20.892 101.905 1.754 0.372 -0.150 C4 NOC 19 NOC "H6'1" 1H6* H 0 0 N N N 42.613 -17.933 104.871 -3.882 1.972 1.775 "H6'1" NOC 20 NOC "H6'2" 2H6* H 0 0 N N N 42.284 -18.890 103.524 -3.738 2.113 0.007 "H6'2" NOC 21 NOC "HO6'" HO6* H 0 0 N N N 41.860 -20.090 105.535 -5.898 1.789 0.700 "HO6'" NOC 22 NOC "H5'1" 1H5* H 0 0 N N N 44.499 -19.684 102.145 -1.221 0.174 1.971 "H5'1" NOC 23 NOC "H5'2" 2H5* H 0 0 N N N 44.682 -20.767 103.426 -1.575 1.764 1.238 "H5'2" NOC 24 NOC "HC4'" HC4* H 0 0 N N N 43.326 -18.416 103.760 -3.367 -0.495 1.554 "HC4'" NOC 25 NOC "HC3'" HC3* H 0 0 N N N 45.410 -18.067 105.667 -3.337 0.320 -1.349 "HC3'" NOC 26 NOC "HO3'" HO3* H 0 0 N N N 45.709 -16.205 105.549 -3.882 -1.898 -1.523 "HO3'" NOC 27 NOC "HC2'" HC2* H 0 0 N N N 46.469 -17.294 102.792 -1.382 -1.797 -0.294 "HC2'" NOC 28 NOC "HO2'" HO2* H 0 0 N N N 48.401 -17.775 103.822 -1.867 -1.641 -2.558 "HO2'" NOC 29 NOC "HC1'" HC1* H 0 0 N N N 47.039 -20.157 103.796 -0.696 1.143 -0.836 "HC1'" NOC 30 NOC HC8 HC8 H 0 1 N N N 46.381 -18.534 100.357 0.089 -1.831 1.558 HC8 NOC 31 NOC HN61 1HN6 H 0 0 N N N 50.355 -21.187 98.662 6.040 -0.535 0.671 HN61 NOC 32 NOC HN62 2HN6 H 0 0 N N N 50.688 -22.796 98.724 4.909 -1.519 1.430 HN62 NOC 33 NOC HC2 HC2 H 0 1 N N N 49.819 -23.314 103.244 3.650 2.480 -1.777 HC2 NOC 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NOC "C6'" "O6'" SING N N 1 NOC "C6'" "C4'" SING N N 2 NOC "C6'" "H6'1" SING N N 3 NOC "C6'" "H6'2" SING N N 4 NOC "O6'" "HO6'" SING N N 5 NOC "C5'" "C4'" SING N N 6 NOC "C5'" "C1'" SING N N 7 NOC "C5'" "H5'1" SING N N 8 NOC "C5'" "H5'2" SING N N 9 NOC "C4'" "C3'" SING N N 10 NOC "C4'" "HC4'" SING N N 11 NOC "C3'" "O3'" SING N N 12 NOC "C3'" "C2'" SING N N 13 NOC "C3'" "HC3'" SING N N 14 NOC "O3'" "HO3'" SING N N 15 NOC "C2'" "O2'" SING N N 16 NOC "C2'" "C1'" SING N N 17 NOC "C2'" "HC2'" SING N N 18 NOC "O2'" "HO2'" SING N N 19 NOC "C1'" N9 SING N N 20 NOC "C1'" "HC1'" SING N N 21 NOC N9 C8 SING Y N 22 NOC N9 C4 SING Y N 23 NOC C8 N7 DOUB Y N 24 NOC C8 HC8 SING N N 25 NOC N7 C5 SING Y N 26 NOC C5 C6 DOUB Y N 27 NOC C5 C4 SING Y N 28 NOC C6 N6 SING N N 29 NOC C6 N1 SING Y N 30 NOC N6 HN61 SING N N 31 NOC N6 HN62 SING N N 32 NOC N1 C2 DOUB Y N 33 NOC C2 N3 SING Y N 34 NOC C2 HC2 SING N N 35 NOC N3 C4 DOUB Y N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NOC SMILES ACDLabs 10.04 "n1c(c2ncn(c2nc1)C3CC(CO)C(O)C3O)N" NOC SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3C[C@@H](CO)[C@H](O)[C@H]3O" NOC SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3C[CH](CO)[CH](O)[CH]3O" NOC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@@H]3CC([C@@H]([C@H]3O)O)CO)N" NOC SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3CC(C(C3O)O)CO)N" NOC InChI InChI 1.03 "InChI=1S/C11H15N5O3/c12-10-7-11(14-3-13-10)16(4-15-7)6-1-5(2-17)8(18)9(6)19/h3-6,8-9,17-19H,1-2H2,(H2,12,13,14)/t5-,6+,8-,9-/m0/s1" NOC InChIKey InChI 1.03 UGRNVLGKAGREKS-FAYXRDSDSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NOC "SYSTEMATIC NAME" ACDLabs 10.04 "(1S,2S,3R,5S)-3-(6-amino-9H-purin-9-yl)-5-(hydroxymethyl)cyclopentane-1,2-diol" NOC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1S,2S,3R)-3-(6-aminopurin-9-yl)-5-(hydroxymethyl)cyclopentane-1,2-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NOC "Create component" 2002-04-23 RCSB NOC "Modify descriptor" 2011-06-04 RCSB NOC "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NOC _pdbx_chem_comp_synonyms.name NEPLANOCIN _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##