data_NOF # _chem_comp.id NOF _chem_comp.name ;tert-butyl 7'-[5-[(3aS,4S,6aR)-2-oxidanylidene-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]-1-chloranyl-2,3,4,5,6-pentamethyl-spiro[1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane-1,2'-3-aza-1-azonia-2$l^{8}-iridatricyclo[6.3.1.0^{4,12}]dodeca-1(11),4,6,8(12),9-pentaene]-3'-carboxylate ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H45 Cl Ir N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "iridium catalyst for CH activation" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-08-17 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 847.487 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NOF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AQY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NOF N1 N1 N 1 1 Y N N 3.220 -23.715 13.174 3.220 -23.715 13.174 N1 NOF 1 NOF N3 N2 N 0 1 N N N 12.018 -28.217 5.698 12.018 -28.217 5.698 N3 NOF 2 NOF C4 C1 C 0 1 N N N 0.390 -24.185 16.515 0.390 -24.185 16.515 C4 NOF 3 NOF C5 C2 C 0 1 N N N 2.089 -26.033 16.440 2.089 -26.033 16.440 C5 NOF 4 NOF C6 C3 C 0 1 N N N 0.966 -27.040 16.570 0.966 -27.040 16.570 C6 NOF 5 NOF C7 C4 C 0 1 N N N 3.433 -26.230 16.299 3.433 -26.230 16.299 C7 NOF 6 NOF C8 C5 C 0 1 N N N 4.218 -27.507 16.315 4.218 -27.507 16.315 C8 NOF 7 NOF C10 C6 C 0 1 N N N 5.478 -24.619 16.097 5.478 -24.619 16.097 C10 NOF 8 NOF C13 C7 C 0 1 Y N N 5.467 -26.456 11.337 5.467 -26.456 11.337 C13 NOF 9 NOF C15 C8 C 0 1 Y N N 6.079 -25.579 10.341 6.079 -25.579 10.341 C15 NOF 10 NOF C17 C9 C 0 1 Y N N 4.392 -22.099 11.066 4.392 -22.099 11.066 C17 NOF 11 NOF C20 C10 C 0 1 N N N 6.551 -24.074 7.911 6.551 -24.074 7.911 C20 NOF 12 NOF C21 C11 C 0 1 N N N 7.377 -23.417 6.784 7.377 -23.417 6.784 C21 NOF 13 NOF C22 C12 C 0 1 N N N 8.166 -24.569 6.091 8.166 -24.569 6.091 C22 NOF 14 NOF C24 C13 C 0 1 N N N 9.997 -26.285 6.522 9.997 -26.285 6.522 C24 NOF 15 NOF C26 C14 C 0 1 N N S 11.627 -28.226 7.049 11.627 -28.226 7.049 C26 NOF 16 NOF C28 C15 C 0 1 N N R 12.973 -28.590 7.940 12.973 -28.590 7.940 C28 NOF 17 NOF C1 C16 C 0 1 N N N 2.957 -24.016 16.211 2.957 -24.016 16.211 C1 NOF 18 NOF C2 C17 C 0 1 N N N 3.076 -22.514 16.209 3.076 -22.514 16.209 C2 NOF 19 NOF C3 C18 C 0 1 N N N 1.815 -24.727 16.397 1.815 -24.727 16.397 C3 NOF 20 NOF C9 C19 C 0 1 N N N 4.015 -24.950 16.219 4.015 -24.950 16.219 C9 NOF 21 NOF C11 C20 C 0 1 Y N N 4.500 -25.855 12.311 4.500 -25.855 12.311 C11 NOF 22 NOF C12 C21 C 0 1 Y N N 4.141 -24.363 12.221 4.141 -24.363 12.221 C12 NOF 23 NOF IR1 IR1 IR 0 0 N N N 2.696 -25.348 14.399 2.696 -25.348 14.399 IR1 NOF 24 NOF C14 C22 C 0 1 Y N N 4.756 -23.528 11.156 4.756 -23.528 11.156 C14 NOF 25 NOF C16 C23 C 0 1 Y N N 5.697 -24.143 10.213 5.697 -24.143 10.213 C16 NOF 26 NOF C18 C24 C 0 1 Y N N 2.803 -22.327 13.092 2.803 -22.327 13.092 C18 NOF 27 NOF C19 C25 C 0 1 Y N N 3.431 -21.526 12.034 3.431 -21.526 12.034 C19 NOF 28 NOF N2 N3 N 0 1 N N N 6.426 -23.370 9.201 6.426 -23.370 9.201 N2 NOF 29 NOF O1 O1 O 0 1 N N N 5.818 -25.272 7.693 5.818 -25.272 7.693 O1 NOF 30 NOF C23 C26 C 0 1 N N N 9.051 -25.237 7.147 9.051 -25.237 7.147 C23 NOF 31 NOF C25 C27 C 0 1 N N S 10.991 -26.907 7.496 10.991 -26.907 7.496 C25 NOF 32 NOF S1 S1 S 0 1 N N N 12.520 -25.920 7.844 12.520 -25.920 7.844 S1 NOF 33 NOF C27 C28 C 0 1 N N N 13.240 -27.184 8.696 13.240 -27.184 8.696 C27 NOF 34 NOF N4 N4 N 0 1 N N N 13.855 -28.747 6.785 13.855 -28.747 6.785 N4 NOF 35 NOF C29 C29 C 0 1 N N N 13.369 -28.586 5.624 13.369 -28.586 5.624 C29 NOF 36 NOF O2 O2 O 0 1 N N N 14.030 -28.648 4.458 14.030 -28.648 4.458 O2 NOF 37 NOF N5 N5 N 0 1 N N N 3.884 -26.747 13.295 3.884 -26.747 13.295 N5 NOF 38 NOF C30 C30 C 0 1 N N N 3.117 -27.904 12.630 3.117 -27.904 12.630 C30 NOF 39 NOF O3 O3 O 0 1 N N N 2.094 -28.368 13.170 2.094 -28.368 13.170 O3 NOF 40 NOF O4 O4 O 0 1 N N N 3.186 -28.069 11.172 3.186 -28.069 11.172 O4 NOF 41 NOF C31 C31 C 0 1 N N N 2.098 -27.597 10.325 2.098 -27.597 10.325 C31 NOF 42 NOF C32 C32 C 0 1 N N N 0.746 -28.320 10.587 0.746 -28.320 10.587 C32 NOF 43 NOF C33 C33 C 0 1 N N N 1.865 -26.069 10.378 1.865 -26.069 10.378 C33 NOF 44 NOF C34 C34 C 0 1 N N N 2.577 -27.878 8.887 2.577 -27.878 8.887 C34 NOF 45 NOF CL46 CL1 CL 0 0 N N N 0.244 -25.776 13.207 0.244 -25.776 13.207 CL46 NOF 46 NOF H1 H1 H 0 1 N N N 11.432 -27.986 4.921 11.432 -27.986 4.921 H1 NOF 47 NOF H2 H2 H 0 1 N N N 0.409 -23.087 16.453 0.408 -23.087 16.453 H2 NOF 48 NOF H3 H3 H 0 1 N N N -0.224 -24.588 15.696 -0.224 -24.588 15.696 H3 NOF 49 NOF H4 H4 H 0 1 N N N -0.040 -24.490 17.480 -0.040 -24.490 17.480 H4 NOF 50 NOF H5 H5 H 0 1 N N N 0.007 -26.510 16.667 0.007 -26.510 16.667 H5 NOF 51 NOF H6 H6 H 0 1 N N N 0.943 -27.680 15.676 0.942 -27.680 15.676 H6 NOF 52 NOF H7 H7 H 0 1 N N N 1.133 -27.662 17.462 1.133 -27.662 17.462 H7 NOF 53 NOF H8 H8 H 0 1 N N N 5.285 -27.284 16.171 5.285 -27.284 16.171 H8 NOF 54 NOF H9 H9 H 0 1 N N N 4.077 -28.012 17.282 4.076 -28.012 17.282 H9 NOF 55 NOF H10 H10 H 0 1 N N N 3.868 -28.163 15.504 3.868 -28.163 15.504 H10 NOF 56 NOF H11 H11 H 0 1 N N N 5.605 -23.527 16.057 5.605 -23.527 16.057 H11 NOF 57 NOF H12 H12 H 0 1 N N N 6.018 -25.020 16.967 6.018 -25.020 16.967 H12 NOF 58 NOF H13 H13 H 0 1 N N N 5.880 -25.069 15.177 5.880 -25.069 15.177 H13 NOF 59 NOF H14 H14 H 0 1 N N N 5.705 -27.509 11.370 5.705 -27.509 11.370 H14 NOF 60 NOF H15 H15 H 0 1 N N N 6.830 -25.983 9.678 6.830 -25.983 9.678 H15 NOF 61 NOF H16 H16 H 0 1 N N N 4.825 -21.476 10.298 4.825 -21.476 10.298 H16 NOF 62 NOF H17 H17 H 0 1 N N N 6.710 -22.924 6.061 6.710 -22.924 6.061 H17 NOF 63 NOF H18 H18 H 0 1 N N N 8.074 -22.677 7.204 8.074 -22.677 7.204 H18 NOF 64 NOF H19 H19 H 0 1 N N N 7.463 -25.305 5.673 7.463 -25.305 5.673 H19 NOF 65 NOF H20 H20 H 0 1 N N N 8.792 -24.160 5.284 8.792 -24.160 5.284 H20 NOF 66 NOF H21 H21 H 0 1 N N N 9.382 -27.092 6.098 9.382 -27.092 6.098 H21 NOF 67 NOF H22 H22 H 0 1 N N N 10.566 -25.796 5.717 10.566 -25.796 5.717 H22 NOF 68 NOF H23 H23 H 0 1 N N N 10.902 -29.034 7.224 10.902 -29.034 7.223 H23 NOF 69 NOF H24 H24 H 0 1 N N N 12.850 -29.455 8.608 12.850 -29.455 8.608 H24 NOF 70 NOF H25 H25 H 0 1 N N N 4.124 -22.229 16.034 4.124 -22.229 16.034 H25 NOF 71 NOF H26 H26 H 0 1 N N N 2.444 -22.097 15.411 2.444 -22.097 15.411 H26 NOF 72 NOF H27 H27 H 0 1 N N N 2.746 -22.119 17.181 2.746 -22.119 17.181 H27 NOF 73 NOF H28 H28 H 0 1 N N N 2.074 -21.908 13.769 2.074 -21.908 13.769 H28 NOF 74 NOF H29 H29 H 0 1 N N N 3.182 -20.478 11.959 3.182 -20.478 11.959 H29 NOF 75 NOF H30 H30 H 0 1 N N N 6.800 -22.458 9.369 6.800 -22.458 9.369 H30 NOF 76 NOF H31 H31 H 0 1 N N N 9.655 -24.465 7.646 9.655 -24.465 7.646 H31 NOF 77 NOF H32 H32 H 0 1 N N N 8.408 -25.735 7.888 8.408 -25.735 7.888 H32 NOF 78 NOF H33 H33 H 0 1 N N N 10.502 -27.053 8.470 10.502 -27.053 8.470 H33 NOF 79 NOF H34 H34 H 0 1 N N N 12.813 -27.229 9.709 12.813 -27.229 9.709 H34 NOF 80 NOF H35 H35 H 0 1 N N N 14.324 -27.007 8.762 14.324 -27.007 8.762 H35 NOF 81 NOF H36 H36 H 0 1 N N N 14.821 -28.976 6.907 14.821 -28.976 6.907 H36 NOF 82 NOF H37 H37 H 0 1 N N N -0.024 -27.914 9.915 -0.024 -27.913 9.915 H37 NOF 83 NOF H38 H38 H 0 1 N N N 0.864 -29.397 10.400 0.864 -29.397 10.400 H38 NOF 84 NOF H39 H39 H 0 1 N N N 0.442 -28.161 11.632 0.442 -28.161 11.632 H39 NOF 85 NOF H40 H40 H 0 1 N N N 1.031 -25.802 9.713 1.031 -25.802 9.713 H40 NOF 86 NOF H41 H41 H 0 1 N N N 1.622 -25.771 11.409 1.622 -25.771 11.409 H41 NOF 87 NOF H42 H42 H 0 1 N N N 2.777 -25.548 10.050 2.776 -25.548 10.050 H42 NOF 88 NOF H43 H43 H 0 1 N N N 1.808 -27.549 8.173 1.808 -27.549 8.173 H43 NOF 89 NOF H44 H44 H 0 1 N N N 3.511 -27.329 8.698 3.511 -27.329 8.698 H44 NOF 90 NOF H45 H45 H 0 1 N N N 2.754 -28.957 8.764 2.754 -28.957 8.764 H45 NOF 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NOF N1 C12 SING Y N 1 NOF N1 IR1 SING N N 2 NOF N1 C18 DOUB Y N 3 NOF N3 C26 SING N N 4 NOF N3 C29 SING N N 5 NOF C4 C3 SING N N 6 NOF C5 C6 SING N N 7 NOF C5 C7 SING N N 8 NOF C5 C3 SING N N 9 NOF C5 IR1 SING N N 10 NOF C7 C8 SING N N 11 NOF C7 C9 SING N N 12 NOF C7 IR1 SING N N 13 NOF C10 C9 SING N N 14 NOF C13 C15 SING Y N 15 NOF C13 C11 DOUB Y N 16 NOF C15 C16 DOUB Y N 17 NOF C17 C14 SING Y N 18 NOF C17 C19 DOUB Y N 19 NOF C20 C21 SING N N 20 NOF C20 N2 SING N N 21 NOF C20 O1 DOUB N N 22 NOF C21 C22 SING N N 23 NOF C22 C23 SING N N 24 NOF C24 C23 SING N N 25 NOF C24 C25 SING N N 26 NOF C26 C28 SING N N 27 NOF C26 C25 SING N N 28 NOF C28 C27 SING N N 29 NOF C28 N4 SING N N 30 NOF C1 C2 SING N N 31 NOF C1 C3 SING N N 32 NOF C1 C9 SING N N 33 NOF C1 IR1 SING N N 34 NOF C3 IR1 SING N N 35 NOF C9 IR1 SING N N 36 NOF C11 C12 SING Y N 37 NOF C11 N5 SING N N 38 NOF C12 C14 DOUB Y N 39 NOF IR1 N5 SING N N 40 NOF C14 C16 SING Y N 41 NOF C16 N2 SING N N 42 NOF C18 C19 SING Y N 43 NOF C25 S1 SING N N 44 NOF S1 C27 SING N N 45 NOF N4 C29 SING N N 46 NOF C29 O2 DOUB N N 47 NOF N5 C30 SING N N 48 NOF C30 O3 DOUB N N 49 NOF C30 O4 SING N N 50 NOF O4 C31 SING N N 51 NOF C31 C32 SING N N 52 NOF C31 C33 SING N N 53 NOF C31 C34 SING N N 54 NOF IR1 CL46 SING N N 55 NOF N3 H1 SING N N 56 NOF C4 H2 SING N N 57 NOF C4 H3 SING N N 58 NOF C4 H4 SING N N 59 NOF C6 H5 SING N N 60 NOF C6 H6 SING N N 61 NOF C6 H7 SING N N 62 NOF C8 H8 SING N N 63 NOF C8 H9 SING N N 64 NOF C8 H10 SING N N 65 NOF C10 H11 SING N N 66 NOF C10 H12 SING N N 67 NOF C10 H13 SING N N 68 NOF C13 H14 SING N N 69 NOF C15 H15 SING N N 70 NOF C17 H16 SING N N 71 NOF C21 H17 SING N N 72 NOF C21 H18 SING N N 73 NOF C22 H19 SING N N 74 NOF C22 H20 SING N N 75 NOF C24 H21 SING N N 76 NOF C24 H22 SING N N 77 NOF C26 H23 SING N N 78 NOF C28 H24 SING N N 79 NOF C2 H25 SING N N 80 NOF C2 H26 SING N N 81 NOF C2 H27 SING N N 82 NOF C18 H28 SING N N 83 NOF C19 H29 SING N N 84 NOF N2 H30 SING N N 85 NOF C23 H31 SING N N 86 NOF C23 H32 SING N N 87 NOF C25 H33 SING N N 88 NOF C27 H34 SING N N 89 NOF C27 H35 SING N N 90 NOF N4 H36 SING N N 91 NOF C32 H37 SING N N 92 NOF C32 H38 SING N N 93 NOF C32 H39 SING N N 94 NOF C33 H40 SING N N 95 NOF C33 H41 SING N N 96 NOF C33 H42 SING N N 97 NOF C34 H43 SING N N 98 NOF C34 H44 SING N N 99 NOF C34 H45 SING N N 100 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NOF InChI InChI 1.06 "InChI=1S/C24H31N5O4S.C10H15.ClH.Ir/c1-24(2,3)33-23(32)28-16-11-10-15(14-7-6-12-25-20(14)16)26-19(30)9-5-4-8-18-21-17(13-34-18)27-22(31)29-21;1-6-7(2)9(4)10(5)8(6)3;;/h6-7,10-12,17-18,21H,4-5,8-9,13H2,1-3H3,(H4,25,26,27,28,29,30,31,32);1-5H3;1H;/q;;;+3/p-2/t17-,18-,21-;;;/m0.../s1" NOF InChIKey InChI 1.06 NIFXELQADIYDEE-HVXVAELJSA-L NOF SMILES_CANONICAL CACTVS 3.385 "CC1C(C)C(C)C(C)C1C.CC(C)(C)OC(=O)N2[Ir](Cl)[n+]3cccc4c(NC(=O)CCCC[C@@H]5SC[C@@H]6NC(=O)N[C@H]56)ccc2c34" NOF SMILES CACTVS 3.385 "CC1C(C)C(C)C(C)C1C.CC(C)(C)OC(=O)N2[Ir](Cl)[n+]3cccc4c(NC(=O)CCCC[CH]5SC[CH]6NC(=O)N[CH]56)ccc2c34" NOF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC12C3([Ir]1456(C2(C4(C53C)C)C)([n+]7cccc8c7c(ccc8NC(=O)CCCC[C@H]9[C@@H]1[C@H](CS9)NC(=O)N1)N6C(=O)OC(C)(C)C)Cl)C" NOF SMILES "OpenEye OEToolkits" 2.0.7 "CC12C3([Ir]1456(C2(C4(C53C)C)C)([n+]7cccc8c7c(ccc8NC(=O)CCCCC9C1C(CS9)NC(=O)N1)N6C(=O)OC(C)(C)C)Cl)C" # _pdbx_chem_comp_identifier.comp_id NOF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier ;~{tert}-butyl 7'-[5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]-1-chloranyl-2,3,4,5,6-pentamethyl-spiro[1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane-1,2'-3-aza-1-azonia-2$l^{8}-iridatricyclo[6.3.1.0^{4,12}]dodeca-1(11),4,6,8(12),9-pentaene]-3'-carboxylate ; # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NOF _pdbx_chem_comp_synonyms.name "iridium catalyst for CH activation" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NOF "Create component" 2022-08-18 PDBE NOF "Initial release" 2023-08-23 RCSB NOF "Modify descriptor" 2023-09-23 RCSB #