data_NOJ # _chem_comp.id NOJ _chem_comp.name 1-DEOXYNOJIRIMYCIN _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms MORANOLINE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-08-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces DNJ _chem_comp.formula_weight 163.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NOJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DOG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NOJ C1 C1 C 0 1 N N N N N N 31.502 17.462 4.219 -0.567 -1.798 -0.192 C1 NOJ 1 NOJ C2 C2 C 0 1 N N S N N N 32.509 17.825 5.325 -1.616 -0.787 0.276 C2 NOJ 2 NOJ O2 O2 O 0 1 N N N N N N 31.817 18.616 6.325 -2.899 -1.162 -0.231 O2 NOJ 3 NOJ C3 C3 C 0 1 N N R N N N 33.716 18.643 4.860 -1.246 0.604 -0.247 C3 NOJ 4 NOJ O3 O3 O 0 1 N N N N N N 34.814 18.602 5.795 -2.191 1.562 0.234 O3 NOJ 5 NOJ C4 C4 C 0 1 N N R N N N 34.228 18.111 3.507 0.154 0.972 0.252 C4 NOJ 6 NOJ O4 O4 O 0 1 N N N N N N 35.335 18.918 3.067 0.530 2.245 -0.278 O4 NOJ 7 NOJ C5 C5 C 0 1 N N R N N N 33.091 18.162 2.473 1.152 -0.090 -0.215 C5 NOJ 8 NOJ N5 N5 N 0 1 N N N N N N 31.959 17.453 2.914 0.755 -1.402 0.311 N5 NOJ 9 NOJ C6 C6 C 0 1 N N N N N N 33.518 17.562 1.100 2.550 0.263 0.298 C6 NOJ 10 NOJ O6 O6 O 0 1 N N N N N N 33.243 18.503 0.046 3.500 -0.663 -0.234 O6 NOJ 11 NOJ H11 H11 H 0 1 N N N N N N 31.141 16.446 4.437 -0.820 -2.787 0.191 H11 NOJ 12 NOJ H12 H12 H 0 1 N N N N N N 30.693 18.205 4.268 -0.548 -1.824 -1.281 H12 NOJ 13 NOJ H2 H2 H 0 1 N N N N N N 32.898 16.868 5.703 -1.646 -0.771 1.365 H2 NOJ 14 NOJ HO2 HO2 H 0 1 N N N N N N 32.423 18.851 7.018 -3.196 -2.035 0.058 HO2 NOJ 15 NOJ H3 H3 H 0 1 N N N N N N 33.367 19.683 4.775 -1.256 0.598 -1.337 H3 NOJ 16 NOJ HO3 HO3 H 0 1 N N N N N N 35.535 19.123 5.461 -3.102 1.387 -0.040 HO3 NOJ 17 NOJ H4 H4 H 0 1 N N N N N N 34.563 17.069 3.618 0.153 1.017 1.341 H4 NOJ 18 NOJ HO4 HO4 H 0 1 N N N N N N 35.653 18.593 2.233 -0.062 2.966 -0.024 HO4 NOJ 19 NOJ H5 H5 H 0 1 N N N N N N 32.850 19.228 2.352 1.163 -0.124 -1.305 H5 NOJ 20 NOJ HN5 HN5 H 0 1 N N N N N N 32.165 16.494 2.720 0.774 -1.408 1.320 HN5 NOJ 21 NOJ H61 H61 H 0 1 N N N N N N 34.595 17.341 1.119 2.809 1.273 -0.020 H61 NOJ 22 NOJ H62 H62 H 0 1 N N N N N N 32.954 16.635 0.917 2.561 0.211 1.386 H62 NOJ 23 NOJ HO6 HO6 H 0 1 N N N N N N 33.506 18.131 -0.788 4.410 -0.499 0.050 HO6 NOJ 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NOJ C1 C2 SING N N 1 NOJ C1 N5 SING N N 2 NOJ C1 H11 SING N N 3 NOJ C1 H12 SING N N 4 NOJ C2 O2 SING N N 5 NOJ C2 C3 SING N N 6 NOJ C2 H2 SING N N 7 NOJ O2 HO2 SING N N 8 NOJ C3 O3 SING N N 9 NOJ C3 C4 SING N N 10 NOJ C3 H3 SING N N 11 NOJ O3 HO3 SING N N 12 NOJ C4 O4 SING N N 13 NOJ C4 C5 SING N N 14 NOJ C4 H4 SING N N 15 NOJ O4 HO4 SING N N 16 NOJ C5 N5 SING N N 17 NOJ C5 C6 SING N N 18 NOJ C5 H5 SING N N 19 NOJ N5 HN5 SING N N 20 NOJ C6 O6 SING N N 21 NOJ C6 H61 SING N N 22 NOJ C6 H62 SING N N 23 NOJ O6 HO6 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NOJ SMILES ACDLabs 12.01 "OC1C(NCC(O)C1O)CO" NOJ SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1NC[C@H](O)[C@@H](O)[C@@H]1O" NOJ SMILES CACTVS 3.370 "OC[CH]1NC[CH](O)[CH](O)[CH]1O" NOJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@@H]([C@H]([C@@H]([C@H](N1)CO)O)O)O" NOJ SMILES "OpenEye OEToolkits" 1.7.0 "C1C(C(C(C(N1)CO)O)O)O" NOJ InChI InChI 1.03 "InChI=1S/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4+,5-,6-/m1/s1" NOJ InChIKey InChI 1.03 LXBIFEVIBLOUGU-JGWLITMVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NOJ "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol" NOJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R,3R,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support NOJ "CARBOHYDRATE ISOMER" D PDB ? NOJ "CARBOHYDRATE RING" pyranose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NOJ "Create component" 1999-07-08 RCSB NOJ "Modify descriptor" 2011-06-04 RCSB NOJ "Modify synonyms" 2021-03-01 PDBE NOJ "Other modification" 2024-08-16 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NOJ _pdbx_chem_comp_synonyms.name MORANOLINE _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #