data_NOP # _chem_comp.id NOP _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE-N-OXIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H10 N O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 263.141 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NOP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1ASE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NOP N1 N1 N 1 1 Y N N N N N -130.711 4.040 63.586 1.985 -1.708 0.008 N1 NOP 1 NOP O1 O1 O -1 1 N N N N N N -129.636 3.527 63.490 2.250 -3.099 0.015 O1 NOP 2 NOP C2 C2 C 0 1 Y N N N N N -131.339 4.681 62.569 2.999 -0.866 0.018 C2 NOP 3 NOP C2A C2A C 0 1 N N N N N N -130.695 4.720 61.213 4.409 -1.399 0.031 C2A NOP 4 NOP C3 C3 C 0 1 Y N N N N N -132.554 5.305 62.796 2.785 0.505 0.011 C3 NOP 5 NOP O3 O3 O 0 1 N N N N N N -133.172 5.991 61.816 3.832 1.367 0.015 O3 NOP 6 NOP C4 C4 C 0 1 Y N N N N N -133.139 5.260 64.028 1.462 0.985 -0.001 C4 NOP 7 NOP C4A C4A C 0 1 N N N N N N -134.466 5.912 64.224 1.180 2.427 -0.010 C4A NOP 8 NOP O4A O4A O 0 1 N Y N N N N -135.325 6.095 63.312 2.095 3.224 -0.006 O4A NOP 9 NOP C5 C5 C 0 1 Y N N N N N -132.439 4.567 65.062 0.420 0.045 -0.006 C5 NOP 10 NOP C6 C6 C 0 1 Y N N N N N -131.261 3.980 64.801 0.729 -1.297 0.002 C6 NOP 11 NOP C5A C5A C 0 1 N N N N N N -132.909 4.510 66.470 -1.018 0.498 -0.019 C5A NOP 12 NOP O4P O4P O 0 1 N N N N N N -133.946 3.587 66.735 -1.877 -0.644 -0.021 O4P NOP 13 NOP P P P 0 1 N N N N N N -134.794 3.706 67.999 -3.388 -0.089 -0.036 P NOP 14 NOP O1P O1P O 0 1 N N N N N N -135.299 5.085 67.969 -4.412 -1.324 -0.171 O1P NOP 15 NOP O2P O2P O 0 1 N N N N N N -135.778 2.689 67.650 -3.682 0.704 1.334 O2P NOP 16 NOP O3P O3P O 0 1 N N N N N N -133.950 3.369 69.155 -3.566 0.827 -1.184 O3P NOP 17 NOP H2A1 1H2A H 0 0 N N N N N N -131.211 5.247 60.376 4.740 -1.524 1.061 H2A1 NOP 18 NOP H2A2 2H2A H 0 0 N N N N N N -129.667 5.139 61.318 4.437 -2.362 -0.479 H2A2 NOP 19 NOP H2A3 3H2A H 0 0 N N N N N N -130.473 3.675 60.893 5.067 -0.698 -0.481 H2A3 NOP 20 NOP HO3 HO3 H 0 1 N N N N N N -134.005 6.419 61.971 4.054 1.541 -0.910 HO3 NOP 21 NOP H4A H4A H 0 1 N N N N N N -134.865 6.312 65.170 0.159 2.778 -0.019 H4A NOP 22 NOP H6 H6 H 0 1 N N N N N N -130.733 3.436 65.602 -0.068 -2.026 -0.002 H6 NOP 23 NOP H5A1 1H5A H 0 0 N N N N N N -132.046 4.318 67.150 -1.217 1.101 0.867 H5A1 NOP 24 NOP H5A2 2H5A H 0 0 N N N N N N -133.210 5.527 66.811 -1.203 1.094 -0.913 H5A2 NOP 25 NOP HOP2 2HOP H 0 0 N N N N N N -136.305 2.763 68.436 -3.555 0.072 2.055 HOP2 NOP 26 NOP HOP3 3HOP H 0 0 N N N N N N -134.477 3.443 69.941 ? ? ? HOP3 NOP 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NOP N1 O1 SING N N 1 NOP N1 C2 SING Y N 2 NOP N1 C6 DOUB Y N 3 NOP C2 C2A SING N N 4 NOP C2 C3 DOUB Y N 5 NOP C2A H2A1 SING N N 6 NOP C2A H2A2 SING N N 7 NOP C2A H2A3 SING N N 8 NOP C3 O3 SING N N 9 NOP C3 C4 SING Y N 10 NOP O3 HO3 SING N N 11 NOP C4 C4A SING N N 12 NOP C4 C5 DOUB Y N 13 NOP C4A O4A DOUB N N 14 NOP C4A H4A SING N N 15 NOP C5 C6 SING Y N 16 NOP C5 C5A SING N N 17 NOP C6 H6 SING N N 18 NOP C5A O4P SING N N 19 NOP C5A H5A1 SING N N 20 NOP C5A H5A2 SING N N 21 NOP O4P P SING N N 22 NOP P O1P DOUB N N 23 NOP P O2P SING N N 24 NOP P O3P SING N N 25 NOP O2P HOP2 SING N N 26 NOP O3P HOP3 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NOP SMILES ACDLabs 10.04 "[O-][n+]1cc(c(C=O)c(O)c1C)COP(=O)(O)O" NOP SMILES_CANONICAL CACTVS 3.341 "Cc1c(O)c(C=O)c(CO[P](O)(O)=O)c[n+]1[O-]" NOP SMILES CACTVS 3.341 "Cc1c(O)c(C=O)c(CO[P](O)(O)=O)c[n+]1[O-]" NOP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(c[n+]1[O-])COP(=O)(O)O)C=O)O" NOP SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(c[n+]1[O-])COP(=O)(O)O)C=O)O" NOP InChI InChI 1.03 "InChI=1S/C8H10NO7P/c1-5-8(11)7(3-10)6(2-9(5)12)4-16-17(13,14)15/h2-3,11H,4H2,1H3,(H2,13,14,15)" NOP InChIKey InChI 1.03 BBWRYPTUKZTWFD-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NOP "SYSTEMATIC NAME" ACDLabs 10.04 "(4-formyl-5-hydroxy-6-methyl-1-oxidopyridin-3-yl)methyl dihydrogen phosphate" NOP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(5-hydroxy-4-methanoyl-6-methyl-1-oxido-pyridin-1-ium-3-yl)methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NOP "Create component" 1999-07-08 RCSB NOP "Modify descriptor" 2011-06-04 RCSB NOP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id NOP _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C4A _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #