data_NOV
#
_chem_comp.id NOV
_chem_comp.name NOVOBIOCIN
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H36 N2 O11"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;4-Hydroxy-3-[4-hydroxy-3-(3-methylbut-2-enyl)benzamido]-8-methylcoumarin-7-yl
3-O-carbamoyl-5,5-di-C-methyl-alpha-l-lyxofuranoside
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 612.624
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NOV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1AJ6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NOV C1 C1 C 0 1 N N N 60.208 -1.177 37.838 8.460 -1.980 -2.773 C1 NOV 1
NOV O1 O1 O 0 1 N N N 60.309 -2.425 37.138 7.185 -1.525 -2.317 O1 NOV 2
NOV N1 N1 N 0 1 N N N 58.487 -3.022 41.378 8.484 2.381 1.980 N1 NOV 3
NOV C12 C12 C 0 1 N N N 58.544 -3.804 40.332 8.358 1.169 1.403 C12 NOV 4
NOV O4 O4 O 0 1 N N N 58.706 -4.986 40.406 8.966 0.217 1.850 O4 NOV 5
NOV O5 O5 O 0 1 N N N 58.450 -3.164 39.196 7.560 1.014 0.329 O5 NOV 6
NOV C27 C27 C 0 1 N N R 59.025 -2.985 36.835 7.205 -0.216 -1.745 C27 NOV 7
NOV C28 C28 C 0 1 N N S 58.587 -3.919 37.957 7.473 -0.318 -0.241 C28 NOV 8
NOV C29 C29 C 0 1 N N R 57.181 -4.381 37.605 6.324 -1.085 0.421 C29 NOV 9
NOV O6 O6 O 0 1 N N N 56.295 -3.281 37.757 6.527 -1.124 1.835 O6 NOV 10
NOV C30 C30 C 0 1 N N R 57.198 -5.074 36.249 5.003 -0.374 0.113 C30 NOV 11
NOV O7 O7 O 0 1 N N N 57.702 -4.255 35.185 4.830 -0.284 -1.303 O7 NOV 12
NOV C31 C31 C 0 1 N N N 58.931 -3.577 35.401 5.851 0.462 -1.969 C31 NOV 13
NOV C23 C23 C 0 1 N N N 60.134 -4.517 35.150 5.548 0.514 -3.468 C23 NOV 14
NOV C26 C26 C 0 1 N N N 58.880 -2.410 34.374 5.892 1.884 -1.407 C26 NOV 15
NOV O8 O8 O 0 1 N N N 58.113 -6.107 36.516 3.920 -1.114 0.680 O8 NOV 16
NOV C3 C3 C 0 1 Y N N 58.237 -7.159 35.625 2.682 -0.563 0.588 C3 NOV 17
NOV C4 C4 C 0 1 Y N N 59.009 -8.190 36.154 1.592 -1.232 1.118 C4 NOV 18
NOV C2 C2 C 0 1 N N N 59.618 -8.180 37.496 1.779 -2.566 1.795 C2 NOV 19
NOV C5 C5 C 0 1 Y N N 59.165 -9.313 35.425 0.326 -0.671 1.025 C5 NOV 20
NOV C9 C9 C 0 1 Y N N 58.637 -9.434 34.125 0.170 0.574 0.391 C9 NOV 21
NOV C10 C10 C 0 1 Y N N 57.799 -8.431 33.599 1.281 1.236 -0.139 C10 NOV 22
NOV C11 C11 C 0 1 Y N N 57.580 -7.284 34.371 2.521 0.673 -0.034 C11 NOV 23
NOV O10 O10 O 0 1 N N N 59.960 -10.295 36.039 -0.748 -1.309 1.536 O10 NOV 24
NOV C6 C6 C 0 1 N N N 60.271 -11.385 35.362 -1.983 -0.790 1.459 C6 NOV 25
NOV O11 O11 O 0 1 N N N 61.022 -12.203 35.797 -2.918 -1.410 1.938 O11 NOV 26
NOV C7 C7 C 0 1 N N N 59.730 -11.588 33.996 -2.228 0.451 0.842 C7 NOV 27
NOV C8 C8 C 0 1 N N N 58.964 -10.672 33.396 -1.174 1.160 0.297 C8 NOV 28
NOV O9 O9 O 0 1 N N N 58.503 -10.879 32.147 -1.374 2.356 -0.304 O9 NOV 29
NOV N2 N2 N 0 1 N N N 59.972 -12.874 33.374 -3.534 0.966 0.780 N2 NOV 30
NOV C13 C13 C 0 1 N N N 60.964 -13.271 32.562 -4.502 0.273 0.147 C13 NOV 31
NOV O2 O2 O 0 1 N N N 60.938 -14.412 32.177 -4.266 -0.834 -0.296 O2 NOV 32
NOV C14 C14 C 0 1 Y N N 62.044 -12.409 32.093 -5.847 0.860 -0.008 C14 NOV 33
NOV C15 C15 C 0 1 Y N N 61.786 -11.175 31.463 -6.852 0.144 -0.664 C15 NOV 34
NOV C16 C16 C 0 1 Y N N 62.880 -10.436 30.982 -8.106 0.694 -0.807 C16 NOV 35
NOV C17 C17 C 0 1 Y N N 64.175 -10.913 31.170 -8.373 1.960 -0.300 C17 NOV 36
NOV O3 O3 O 0 1 N N N 65.239 -10.176 30.719 -9.610 2.500 -0.443 O3 NOV 37
NOV C18 C18 C 0 1 Y N N 64.434 -12.148 31.798 -7.376 2.676 0.354 C18 NOV 38
NOV C19 C19 C 0 1 Y N N 63.342 -12.903 32.251 -6.121 2.130 0.505 C19 NOV 39
NOV C20 C20 C 0 1 N N N 62.694 -9.081 30.349 -9.190 -0.077 -1.515 C20 NOV 40
NOV C21 C21 C 0 1 N N N 62.796 -7.897 31.292 -10.098 -0.717 -0.496 C21 NOV 41
NOV C22 C22 C 0 1 N N N 61.812 -7.062 31.682 -10.190 -2.023 -0.429 C22 NOV 42
NOV C24 C24 C 0 1 N N N 62.052 -5.926 32.654 -9.281 -2.886 -1.266 C24 NOV 43
NOV C25 C25 C 0 1 N N N 60.398 -7.148 31.199 -11.204 -2.661 0.484 C25 NOV 44
NOV H11A H11A H 0 0 N N N 61.216 -0.790 38.046 8.836 -1.301 -3.539 H11A NOV 45
NOV H12 H12 H 0 1 N N N 59.658 -0.453 37.219 9.157 -2.006 -1.936 H12 NOV 46
NOV H13 H13 H 0 1 N N N 59.671 -1.331 38.786 8.359 -2.981 -3.193 H13 NOV 47
NOV HN11 HN11 H 0 0 N N N 58.581 -3.407 42.296 9.059 2.493 2.753 HN11 NOV 48
NOV HN12 HN12 H 0 0 N N N 58.350 -2.039 41.260 7.999 3.141 1.622 HN12 NOV 49
NOV H27 H27 H 0 1 N N N 58.285 -2.171 36.801 7.991 0.375 -2.216 H27 NOV 50
NOV H28 H28 H 0 1 N N N 59.311 -4.739 38.073 8.411 -0.848 -0.073 H28 NOV 51
NOV H29 H29 H 0 1 N N N 56.795 -5.152 38.288 6.291 -2.101 0.029 H29 NOV 52
NOV HO6 HO6 H 0 1 N N N 55.411 -3.554 37.541 5.835 -1.595 2.319 HO6 NOV 53
NOV H30 H30 H 0 1 N N N 56.195 -5.369 35.907 5.022 0.629 0.541 H30 NOV 54
NOV H231 H231 H 0 0 N N N 60.067 -4.936 34.135 5.518 -0.499 -3.868 H231 NOV 55
NOV H232 H232 H 0 0 N N N 61.070 -3.949 35.251 4.583 0.997 -3.627 H232 NOV 56
NOV H233 H233 H 0 0 N N N 60.120 -5.335 35.886 6.327 1.083 -3.976 H233 NOV 57
NOV H261 H261 H 0 0 N N N 58.813 -2.820 33.355 6.780 2.396 -1.778 H261 NOV 58
NOV H262 H262 H 0 0 N N N 57.999 -1.783 34.575 5.002 2.427 -1.724 H262 NOV 59
NOV H263 H263 H 0 0 N N N 59.792 -1.801 34.465 5.925 1.844 -0.318 H263 NOV 60
NOV H21A H21A H 0 0 N N N 58.902 -8.584 38.227 1.969 -2.411 2.857 H21A NOV 61
NOV H22 H22 H 0 1 N N N 60.526 -8.801 37.491 0.878 -3.166 1.671 H22 NOV 62
NOV H23 H23 H 0 1 N N N 59.881 -7.148 37.772 2.626 -3.085 1.346 H23 NOV 63
NOV H10 H10 H 0 1 N N N 57.339 -8.544 32.628 1.161 2.192 -0.626 H10 NOV 64
NOV H11 H11 H 0 1 N N N 56.921 -6.505 34.018 3.380 1.186 -0.440 H11 NOV 65
NOV HO9 HO9 H 0 1 N N N 58.808 -11.722 31.832 -2.296 2.645 -0.308 HO9 NOV 66
NOV HN2 HN2 H 0 1 N N N 59.292 -13.577 33.583 -3.739 1.819 1.192 HN2 NOV 67
NOV H15 H15 H 0 1 N N N 60.776 -10.808 31.353 -6.645 -0.840 -1.059 H15 NOV 68
NOV HO3 HO3 H 0 1 N N N 66.048 -10.631 30.921 -10.214 2.296 0.285 HO3 NOV 69
NOV H18 H18 H 0 1 N N N 65.446 -12.503 31.927 -7.588 3.659 0.747 H18 NOV 70
NOV H19 H19 H 0 1 N N N 63.504 -13.862 32.720 -5.349 2.685 1.017 H19 NOV 71
NOV H201 H201 H 0 0 N N N 63.477 -8.963 29.585 -9.769 0.602 -2.141 H201 NOV 72
NOV H202 H202 H 0 0 N N N 61.690 -9.061 29.901 -8.740 -0.850 -2.137 H202 NOV 73
NOV H21 H21 H 0 1 N N N 63.776 -7.699 31.701 -10.672 -0.101 0.179 H21 NOV 74
NOV H241 H241 H 0 0 N N N 61.111 -5.383 32.824 -8.559 -2.256 -1.786 H241 NOV 75
NOV H242 H242 H 0 0 N N N 62.418 -6.332 33.609 -8.752 -3.588 -0.621 H242 NOV 76
NOV H243 H243 H 0 0 N N N 62.802 -5.238 32.236 -9.873 -3.438 -1.995 H243 NOV 77
NOV H251 H251 H 0 0 N N N 59.800 -6.353 31.669 -12.140 -2.805 -0.057 H251 NOV 78
NOV H252 H252 H 0 0 N N N 60.376 -7.025 30.106 -10.830 -3.626 0.825 H252 NOV 79
NOV H253 H253 H 0 0 N N N 59.978 -8.129 31.466 -11.377 -2.013 1.344 H253 NOV 80
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NOV C1 O1 SING N N 1
NOV C1 H11A SING N N 2
NOV C1 H12 SING N N 3
NOV C1 H13 SING N N 4
NOV O1 C27 SING N N 5
NOV N1 C12 SING N N 6
NOV N1 HN11 SING N N 7
NOV N1 HN12 SING N N 8
NOV C12 O4 DOUB N N 9
NOV C12 O5 SING N N 10
NOV O5 C28 SING N N 11
NOV C27 C28 SING N N 12
NOV C27 C31 SING N N 13
NOV C27 H27 SING N N 14
NOV C28 C29 SING N N 15
NOV C28 H28 SING N N 16
NOV C29 O6 SING N N 17
NOV C29 C30 SING N N 18
NOV C29 H29 SING N N 19
NOV O6 HO6 SING N N 20
NOV C30 O7 SING N N 21
NOV C30 O8 SING N N 22
NOV C30 H30 SING N N 23
NOV O7 C31 SING N N 24
NOV C31 C23 SING N N 25
NOV C31 C26 SING N N 26
NOV C23 H231 SING N N 27
NOV C23 H232 SING N N 28
NOV C23 H233 SING N N 29
NOV C26 H261 SING N N 30
NOV C26 H262 SING N N 31
NOV C26 H263 SING N N 32
NOV O8 C3 SING N N 33
NOV C3 C4 DOUB Y N 34
NOV C3 C11 SING Y N 35
NOV C4 C2 SING N N 36
NOV C4 C5 SING Y N 37
NOV C2 H21A SING N N 38
NOV C2 H22 SING N N 39
NOV C2 H23 SING N N 40
NOV C5 C9 DOUB Y N 41
NOV C5 O10 SING N N 42
NOV C9 C10 SING Y N 43
NOV C9 C8 SING N N 44
NOV C10 C11 DOUB Y N 45
NOV C10 H10 SING N N 46
NOV C11 H11 SING N N 47
NOV O10 C6 SING N N 48
NOV C6 O11 DOUB N N 49
NOV C6 C7 SING N N 50
NOV C7 C8 DOUB N N 51
NOV C7 N2 SING N N 52
NOV C8 O9 SING N N 53
NOV O9 HO9 SING N N 54
NOV N2 C13 SING N N 55
NOV N2 HN2 SING N N 56
NOV C13 O2 DOUB N N 57
NOV C13 C14 SING N N 58
NOV C14 C15 DOUB Y N 59
NOV C14 C19 SING Y N 60
NOV C15 C16 SING Y N 61
NOV C15 H15 SING N N 62
NOV C16 C17 DOUB Y N 63
NOV C16 C20 SING N N 64
NOV C17 O3 SING N N 65
NOV C17 C18 SING Y N 66
NOV O3 HO3 SING N N 67
NOV C18 C19 DOUB Y N 68
NOV C18 H18 SING N N 69
NOV C19 H19 SING N N 70
NOV C20 C21 SING N N 71
NOV C20 H201 SING N N 72
NOV C20 H202 SING N N 73
NOV C21 C22 DOUB N N 74
NOV C21 H21 SING N N 75
NOV C22 C24 SING N N 76
NOV C22 C25 SING N N 77
NOV C24 H241 SING N N 78
NOV C24 H242 SING N N 79
NOV C24 H243 SING N N 80
NOV C25 H251 SING N N 81
NOV C25 H252 SING N N 82
NOV C25 H253 SING N N 83
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NOV SMILES ACDLabs 12.01 "O=C(c1ccc(O)c(c1)C\C=C(/C)C)NC3=C(O)c4ccc(OC2OC(C(OC)C(OC(=O)N)C2O)(C)C)c(c4OC3=O)C"
NOV SMILES_CANONICAL CACTVS 3.370 "CO[C@@H]1[C@@H](OC(N)=O)[C@@H](O)[C@H](Oc2ccc3C(=C(NC(=O)c4ccc(O)c(CC=C(C)C)c4)C(=O)Oc3c2C)O)OC1(C)C"
NOV SMILES CACTVS 3.370 "CO[CH]1[CH](OC(N)=O)[CH](O)[CH](Oc2ccc3C(=C(NC(=O)c4ccc(O)c(CC=C(C)C)c4)C(=O)Oc3c2C)O)OC1(C)C"
NOV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1c(ccc2c1OC(=O)C(=C2O)NC(=O)c3ccc(c(c3)CC=C(C)C)O)O[C@H]4[C@@H]([C@@H]([C@H](C(O4)(C)C)OC)OC(=O)N)O"
NOV SMILES "OpenEye OEToolkits" 1.7.0 "Cc1c(ccc2c1OC(=O)C(=C2O)NC(=O)c3ccc(c(c3)CC=C(C)C)O)OC4C(C(C(C(O4)(C)C)OC)OC(=O)N)O"
NOV InChI InChI 1.03 "InChI=1S/C31H36N2O11/c1-14(2)7-8-16-13-17(9-11-19(16)34)27(37)33-21-22(35)18-10-12-20(15(3)24(18)42-28(21)38)41-29-23(36)25(43-30(32)39)26(40-6)31(4,5)44-29/h7,9-13,23,25-26,29,34-36H,8H2,1-6H3,(H2,32,39)(H,33,37)/t23-,25+,26-,29-/m1/s1"
NOV InChIKey InChI 1.03 YJQPYGGHQPGBLI-KGSXXDOSSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NOV "SYSTEMATIC NAME" ACDLabs 12.01 "N-{7-[(3-O-carbamoyl-6-deoxy-5-methyl-4-O-methyl-beta-D-gulopyranosyl)oxy]-4-hydroxy-8-methyl-2-oxo-2H-chromen-3-yl}-4-hydroxy-3-(3-methylbut-2-en-1-yl)benzamide"
NOV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(3R,4S,5R,6R)-5-hydroxy-6-[4-hydroxy-3-[[4-hydroxy-3-(3-methylbut-2-enyl)phenyl]carbonylamino]-8-methyl-2-oxo-chromen-7-yl]oxy-3-methoxy-2,2-dimethyl-oxan-4-yl] carbamate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NOV "Create component" 1999-07-08 RCSB
NOV "Modify synonyms" 2011-02-17 RCSB
NOV "Modify descriptor" 2011-06-04 RCSB
NOV "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id NOV
_pdbx_chem_comp_synonyms.name "4-Hydroxy-3-[4-hydroxy-3-(3-methylbut-2-enyl)benzamido]-8-methylcoumarin-7-yl 3-O-carbamoyl-5,5-di-C-methyl-alpha-l-lyxofuranoside"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##