data_NPB # _chem_comp.id NPB _chem_comp.name "3-NITROPHENYLBORONIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H6 B N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-11-19 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 166.927 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NPB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KDS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NPB B B B 0 1 N N N N N N 26.492 5.297 16.869 2.538 0.499 -0.001 B NPB 1 NPB OB1 OB1 O 0 1 N N N N N N 25.422 4.264 17.027 3.749 -0.244 -0.001 OB1 NPB 2 NPB OB2 OB2 O 0 1 N N N N N N 26.590 6.310 17.864 2.577 1.918 0.000 OB2 NPB 3 NPB CP1 CP1 C 0 1 Y N N N N N 26.008 6.088 15.598 1.158 -0.250 0.000 CP1 NPB 4 NPB CP2 CP2 C 0 1 Y N N N N N 25.367 5.421 14.595 -0.031 0.477 0.006 CP2 NPB 5 NPB CP3 CP3 C 0 1 Y N N N N N 24.887 6.057 13.491 -1.242 -0.186 0.000 CP3 NPB 6 NPB NT NT N 1 1 N N N N N N 24.138 5.290 12.428 -2.505 0.584 -0.001 NT NPB 7 NPB O1 O1 O 0 1 N N N N N N 23.571 5.857 11.565 -3.574 0.001 -0.001 O1 NPB 8 NPB O2 O2 O -1 1 N N N N N N 24.003 4.105 12.511 -2.477 1.802 -0.001 O2 NPB 9 NPB CP4 CP4 C 0 1 Y N N N N N 25.064 7.451 13.374 -1.276 -1.569 0.000 CP4 NPB 10 NPB CP5 CP5 C 0 1 Y N N N N N 25.719 8.141 14.385 -0.098 -2.295 0.000 CP5 NPB 11 NPB CP6 CP6 C 0 1 Y N N N N N 26.188 7.433 15.500 1.118 -1.643 -0.001 CP6 NPB 12 NPB HO11 1HO1 H 0 0 N N N N N N 25.357 3.588 16.363 4.471 0.399 -0.001 HO11 NPB 13 NPB HO21 1HO2 H 0 0 N N N N N N 27.270 6.966 17.764 3.510 2.173 -0.001 HO21 NPB 14 NPB HC21 1HC2 H 0 0 N N N N N N 25.232 4.330 14.680 -0.006 1.557 0.006 HC21 NPB 15 NPB HC41 1HC4 H 0 0 N N N N N N 24.691 8.001 12.494 -2.225 -2.083 0.001 HC41 NPB 16 NPB HC51 1HC5 H 0 0 N N N N N N 25.864 9.231 14.304 -0.130 -3.375 0.000 HC51 NPB 17 NPB HC61 1HC6 H 0 0 N N N N N N 26.713 7.948 16.322 2.036 -2.211 -0.001 HC61 NPB 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NPB B OB1 SING N N 1 NPB B OB2 SING N N 2 NPB B CP1 SING N N 3 NPB OB1 HO11 SING N N 4 NPB OB2 HO21 SING N N 5 NPB CP1 CP2 DOUB Y N 6 NPB CP1 CP6 SING Y N 7 NPB CP2 CP3 SING Y N 8 NPB CP2 HC21 SING N N 9 NPB CP3 NT SING N N 10 NPB CP3 CP4 DOUB Y N 11 NPB NT O1 DOUB N N 12 NPB NT O2 SING N N 13 NPB CP4 CP5 SING Y N 14 NPB CP4 HC41 SING N N 15 NPB CP5 CP6 DOUB Y N 16 NPB CP5 HC51 SING N N 17 NPB CP6 HC61 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NPB SMILES ACDLabs 10.04 "[O-][N+](=O)c1cc(B(O)O)ccc1" NPB SMILES_CANONICAL CACTVS 3.341 "OB(O)c1cccc(c1)[N+]([O-])=O" NPB SMILES CACTVS 3.341 "OB(O)c1cccc(c1)[N+]([O-])=O" NPB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "B(c1cccc(c1)[N+](=O)[O-])(O)O" NPB SMILES "OpenEye OEToolkits" 1.5.0 "B(c1cccc(c1)[N+](=O)[O-])(O)O" NPB InChI InChI 1.03 "InChI=1S/C6H6BNO4/c9-7(10)5-2-1-3-6(4-5)8(11)12/h1-4,9-10H" NPB InChIKey InChI 1.03 ZNRGSYUVFVNSAW-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NPB "SYSTEMATIC NAME" ACDLabs 10.04 "(3-nitrophenyl)boronic acid" NPB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3-nitrophenyl)boronic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NPB "Create component" 2001-11-19 RCSB NPB "Modify descriptor" 2011-06-04 RCSB NPB "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id NPB _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #